Wall clock time and date at job start Mon Mar 30 2020 20:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 119.99818 * 2 1 4 4 H 1.09000 * 109.47356 * 5.43081 * 3 2 1 5 5 O 1.42901 * 109.46985 * 245.43553 * 3 2 1 6 6 C 1.50692 * 109.47480 * 125.43771 * 3 2 1 7 7 O 1.21284 * 120.00653 * 108.71307 * 6 3 2 8 8 N 1.34785 * 119.99707 * 288.71427 * 6 3 2 9 9 C 1.46494 * 120.00023 * 4.78321 * 8 6 3 10 10 C 1.50703 * 109.47224 * 269.05605 * 9 8 6 11 11 H 1.07995 * 119.99495 * 359.97438 * 10 9 8 12 12 C 1.37874 * 119.99770 * 180.02562 * 10 9 8 13 13 N 1.31506 * 120.00441 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99756 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46792 * 60.00057 * 14 12 10 16 16 H 1.48494 * 109.47318 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47120 * 300.00206 * 14 12 10 18 18 C 1.46501 * 119.99627 * 184.78154 * 8 6 3 19 19 C 1.50695 * 109.46933 * 94.13325 * 18 8 6 20 20 C 1.38234 * 119.62149 * 94.38167 * 19 18 8 21 21 C 1.38626 * 119.16091 * 179.78889 * 20 19 18 22 22 C 1.38674 * 118.41903 * 0.47650 * 21 20 19 23 23 C 1.38174 * 119.16695 * 359.50278 * 22 21 20 24 24 N 1.31857 * 119.61684 * 274.40638 * 19 18 8 25 25 H 1.07998 * 120.00304 * 5.11281 * 1 2 3 26 26 H 1.08002 * 119.99750 * 185.11249 * 1 2 3 27 27 H 1.08001 * 120.00414 * 179.97438 * 2 1 3 28 28 H 0.96704 * 113.99977 * 300.00179 * 5 3 2 29 29 H 1.09004 * 109.47187 * 29.05294 * 9 8 6 30 30 H 1.08997 * 109.47502 * 149.05516 * 9 8 6 31 31 H 0.97003 * 120.00305 * 179.97438 * 13 12 10 32 32 H 1.08993 * 109.47838 * 334.12796 * 18 8 6 33 33 H 1.09004 * 109.46695 * 214.12859 * 18 8 6 34 34 H 1.07993 * 120.41656 * 0.02562 * 20 19 18 35 35 H 1.07997 * 120.79179 * 180.23687 * 21 20 19 36 36 H 1.08005 * 120.41658 * 179.78557 * 22 21 20 37 37 H 1.07998 * 119.62231 * 180.25340 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3591 2.1313 0.0973 5 8 2.7867 1.4376 -1.2254 6 6 3.0280 1.3284 1.1575 7 8 4.2206 1.2402 0.9551 8 7 2.5654 1.4471 2.4179 9 6 1.1226 1.4481 2.6716 10 6 0.6079 2.8642 2.6395 11 1 1.2877 3.6816 2.4496 12 6 -0.7306 3.1161 2.8536 13 7 -1.5583 2.1208 3.0853 14 14 -1.3685 4.8715 2.8146 15 1 -1.1004 5.4659 1.4805 16 1 -2.8308 4.8726 3.0728 17 1 -0.6811 5.6713 3.8601 18 6 3.5056 1.5752 3.5342 19 6 3.7255 3.0341 3.8408 20 6 2.9681 3.6480 4.8207 21 6 3.1814 4.9894 5.0981 22 6 4.1460 5.6688 4.3692 23 6 4.8646 4.9885 3.4048 24 7 4.6379 3.7104 3.1709 25 1 -0.5400 0.9315 -0.0833 26 1 -0.5400 -0.9316 0.0834 27 1 1.8501 -0.9353 0.0004 28 1 3.4331 0.7349 -1.3785 29 1 0.6184 0.8608 1.9041 30 1 0.9255 1.0120 3.6508 31 1 -2.4999 2.2981 3.2364 32 1 4.4553 1.1134 3.2642 33 1 3.0961 1.0769 4.4129 34 1 2.2224 3.0888 5.3660 35 1 2.6074 5.4944 5.8609 36 1 4.3363 6.7154 4.5562 37 1 5.6203 5.5093 2.8357 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597148589.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:19 Heat of formation + Delta-G solvation = -42.300890 kcal Electronic energy + Delta-G solvation = -22002.033730 eV Core-core repulsion = 18744.466652 eV Total energy + Delta-G solvation = -3257.567078 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.43662 -40.61822 -37.77202 -36.90819 -34.64299 -34.30241 -33.30002 -32.55453 -29.41545 -28.77479 -26.63519 -24.76894 -24.25243 -23.09170 -21.45207 -20.56776 -18.70533 -18.28764 -18.01057 -17.62929 -17.08373 -16.77786 -16.53459 -16.30162 -15.95143 -15.28074 -14.89733 -14.52340 -14.22012 -14.09333 -13.94260 -13.90312 -13.45386 -13.37072 -13.12043 -12.74478 -12.70726 -12.57878 -12.51826 -12.09760 -11.77899 -11.69891 -10.74546 -10.67970 -10.60455 -10.33576 -10.10056 -9.79593 -9.45352 -8.14823 -6.24319 0.21938 0.46722 1.21419 1.38461 1.42555 1.47411 1.70812 2.26233 2.43448 3.04195 3.15819 3.44623 3.56972 3.65174 3.87156 3.99865 4.04994 4.13516 4.26053 4.31706 4.50798 4.59879 4.66728 4.81212 4.92043 4.95783 4.99223 5.27830 5.31836 5.34482 5.59396 5.68935 5.77196 5.84056 5.87523 6.12722 6.49518 6.64551 6.84972 7.18014 7.25649 7.45361 8.89877 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.011923 B = 0.009903 C = 0.006374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.888987 B = 2826.696945 C = 4391.992999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.202 4.202 3 C 0.131 3.869 4 H 0.111 0.889 5 O -0.551 6.551 6 C 0.492 3.508 7 O -0.577 6.577 8 N -0.584 5.584 9 C 0.230 3.770 10 C -0.528 4.528 11 H 0.036 0.964 12 C 0.038 3.962 13 N -0.906 5.906 14 Si 0.932 3.068 15 H -0.284 1.284 16 H -0.281 1.281 17 H -0.272 1.272 18 C 0.163 3.837 19 C 0.102 3.898 20 C -0.142 4.142 21 C -0.088 4.088 22 C -0.169 4.169 23 C 0.072 3.928 24 N -0.503 5.503 25 H 0.088 0.912 26 H 0.127 0.873 27 H 0.130 0.870 28 H 0.389 0.611 29 H 0.064 0.936 30 H 0.024 0.976 31 H 0.266 0.734 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.135 0.865 35 H 0.156 0.844 36 H 0.166 0.834 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.829 0.515 2.258 5.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.221 4.221 3 C 0.069 3.931 4 H 0.129 0.871 5 O -0.357 6.357 6 C 0.280 3.720 7 O -0.458 6.458 8 N -0.315 5.315 9 C 0.110 3.890 10 C -0.566 4.566 11 H 0.055 0.945 12 C -0.164 4.164 13 N -0.546 5.546 14 Si 0.758 3.242 15 H -0.210 1.210 16 H -0.206 1.206 17 H -0.197 1.197 18 C 0.040 3.960 19 C -0.036 4.036 20 C -0.163 4.163 21 C -0.114 4.114 22 C -0.189 4.189 23 C -0.085 4.085 24 N -0.213 5.213 25 H 0.107 0.893 26 H 0.145 0.855 27 H 0.148 0.852 28 H 0.239 0.761 29 H 0.082 0.918 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.123 0.877 34 H 0.153 0.847 35 H 0.173 0.827 36 H 0.183 0.817 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 5.350 0.496 1.500 5.579 hybrid contribution -0.789 1.060 0.818 1.554 sum 4.562 1.556 2.317 5.348 Atomic orbital electron populations 1.24018 0.95347 1.02985 0.93889 1.23078 0.96754 0.96914 1.05329 1.20839 0.91284 0.98654 0.82343 0.87123 1.86557 1.56921 1.55006 1.37234 1.21563 0.89327 0.75577 0.85491 1.90596 1.17535 1.52530 1.85130 1.48169 1.08901 1.69318 1.05128 1.19667 0.74056 0.96871 0.98399 1.21370 0.93034 0.92959 1.49274 0.94527 1.25301 0.96823 0.99364 0.94874 1.69948 1.04377 1.31784 1.48443 0.86017 0.77504 0.82247 0.78392 1.20967 1.20627 1.19677 1.20256 0.94565 0.90644 0.90560 1.21578 0.92192 0.97438 0.92406 1.22053 0.98843 0.96684 0.98675 1.21907 0.96561 0.93823 0.99086 1.22430 0.96944 1.02476 0.97014 1.23155 0.99062 0.89951 0.96295 1.67490 1.18182 1.10140 1.25478 0.89335 0.85503 0.85193 0.76116 0.91829 0.95755 0.92442 0.89940 0.87681 0.84672 0.82681 0.81685 0.81232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.00 12.42 67.78 0.84 -3.15 16 2 C -0.20 -6.63 7.91 25.65 0.20 -6.42 16 3 C 0.13 5.14 2.99 29.10 0.09 5.23 16 4 H 0.11 4.91 7.03 -2.39 -0.02 4.89 16 5 O -0.55 -20.67 13.03 -130.19 -1.70 -22.36 16 6 C 0.49 21.26 7.02 87.65 0.62 21.87 16 7 O -0.58 -27.05 15.80 15.75 0.25 -26.80 16 8 N -0.58 -24.60 2.45 -830.52 -2.03 -26.63 16 9 C 0.23 10.30 4.86 85.64 0.42 10.72 16 10 C -0.53 -25.97 8.11 25.60 0.21 -25.76 16 11 H 0.04 1.95 7.73 -2.91 -0.02 1.92 16 12 C 0.04 1.87 5.46 84.66 0.46 2.33 16 13 N -0.91 -46.15 13.29 21.44 0.28 -45.86 16 14 Si 0.93 40.61 29.54 68.60 2.03 42.63 16 15 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 16 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 17 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 18 C 0.16 6.27 5.83 85.63 0.50 6.77 16 19 C 0.10 3.96 6.01 42.55 0.26 4.22 16 20 C -0.14 -4.96 9.23 22.36 0.21 -4.75 16 21 C -0.09 -2.59 10.18 22.47 0.23 -2.36 16 22 C -0.17 -4.60 10.11 22.36 0.23 -4.37 16 23 C 0.07 2.32 11.18 84.67 0.95 3.27 16 24 N -0.50 -20.03 10.27 -183.89 -1.89 -21.92 16 25 H 0.09 3.19 7.86 -2.91 -0.02 3.17 16 26 H 0.13 3.32 8.06 -2.91 -0.02 3.30 16 27 H 0.13 3.68 8.06 -2.91 -0.02 3.65 16 28 H 0.39 11.96 8.71 -74.05 -0.65 11.31 16 29 H 0.06 2.82 3.71 -2.38 -0.01 2.81 16 30 H 0.02 1.14 7.94 -2.39 -0.02 1.12 16 31 H 0.27 13.07 8.31 -92.71 -0.77 12.30 16 32 H 0.08 3.25 7.25 -2.39 -0.02 3.24 16 33 H 0.11 3.48 7.86 -2.38 -0.02 3.46 16 34 H 0.14 4.59 8.06 -2.91 -0.02 4.56 16 35 H 0.16 3.62 8.06 -2.91 -0.02 3.60 16 36 H 0.17 3.13 8.06 -2.91 -0.02 3.10 16 37 H 0.17 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -63.20 321.78 2.58 -60.63 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: 0.44 Total: 32.74 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 5.20 Total: 7.57 kcal Atomic # 7 Polarization: -90.78 SS G_CDS: -3.64 Total: -94.41 kcal Atomic # 8 Polarization: -47.72 SS G_CDS: -1.45 Total: -49.16 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.63 kcal Total: -63.20 2.58 -60.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597148589.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.326 kcal (2) G-P(sol) polarization free energy of solvation -63.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds