Wall clock time and date at job start Mon Mar 30 2020 20:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47292 * 2 1 4 4 C 1.53001 * 109.47292 * 180.02562 * 3 2 1 5 5 H 1.09003 * 115.54804 * 29.33199 * 4 3 2 6 6 C 1.53075 * 117.51230 * 243.60971 * 4 3 2 7 7 C 1.52998 * 117.49626 * 175.00245 * 4 3 2 8 8 H 1.09000 * 117.50434 * 359.97438 * 7 4 3 9 9 N 1.46500 * 117.49475 * 215.00234 * 7 4 3 10 10 S 1.65606 * 120.00055 * 145.09078 * 9 7 4 11 11 O 1.42105 * 106.40008 * 311.45637 * 10 9 7 12 12 O 1.42098 * 106.40370 * 178.53822 * 10 9 7 13 13 N 1.65595 * 107.22013 * 64.99549 * 10 9 7 14 14 C 1.46498 * 119.99850 * 89.99911 * 13 10 9 15 15 C 1.46498 * 120.00275 * 270.00200 * 13 10 9 16 16 C 1.50703 * 109.46907 * 94.99986 * 15 13 10 17 17 H 1.08001 * 120.00049 * 359.97438 * 16 15 13 18 18 C 1.37880 * 119.99988 * 180.02562 * 16 15 13 19 19 N 1.31513 * 119.99970 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00266 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47090 * 59.99813 * 20 18 16 22 22 H 1.48499 * 109.47376 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46868 * 300.00174 * 20 18 16 24 24 H 1.08995 * 109.47242 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47324 * 300.00147 * 1 2 3 26 26 H 1.09006 * 109.47007 * 59.99656 * 1 2 3 27 27 H 1.09003 * 109.46983 * 240.00300 * 2 1 3 28 28 H 1.08990 * 109.47270 * 120.00183 * 2 1 3 29 29 H 1.09002 * 109.46831 * 59.99670 * 3 2 1 30 30 H 1.09006 * 109.47376 * 300.00118 * 3 2 1 31 31 H 1.08994 * 117.50999 * 145.04435 * 6 4 3 32 32 H 1.08996 * 117.49447 * 0.02562 * 6 4 3 33 33 H 0.97002 * 120.00335 * 325.09118 * 9 7 4 34 34 H 1.09003 * 109.47325 * 90.00198 * 14 13 10 35 35 H 1.09004 * 109.47539 * 209.99910 * 14 13 10 36 36 H 1.08996 * 109.47424 * 330.00527 * 14 13 10 37 37 H 1.09001 * 109.47378 * 214.99601 * 15 13 10 38 38 H 1.09002 * 109.46925 * 335.00342 * 15 13 10 39 39 H 0.97003 * 120.00349 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 1 4.0400 0.5852 -0.4827 6 6 4.2777 2.0458 1.2153 7 6 4.2764 2.7945 -0.1190 8 1 3.6512 3.6840 -0.1968 9 7 5.5326 2.8378 -0.8715 10 16 5.9119 4.1738 -1.7735 11 8 4.7596 4.4751 -2.5486 12 8 7.1888 3.9233 -2.3443 13 7 6.1101 5.4362 -0.7202 14 6 7.4308 5.7145 -0.1506 15 6 4.9647 6.2747 -0.3580 16 6 4.3581 5.7691 0.9256 17 1 4.7830 4.9090 1.4216 18 6 3.2600 6.4040 1.4661 19 7 2.7417 7.4505 0.8613 20 14 2.5076 5.7770 3.0568 21 1 3.5224 5.8313 4.1395 22 1 1.3459 6.6262 3.4234 23 1 2.0560 4.3745 2.8715 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 5.2131 1.5854 1.5332 32 1 3.6530 2.4421 2.0157 33 1 6.1422 2.0838 -0.8416 34 1 7.9667 6.4088 -0.7979 35 1 7.3140 6.1568 0.8388 36 1 7.9945 4.7852 -0.0690 37 1 5.2964 7.3041 -0.2223 38 1 4.2195 6.2347 -1.1525 39 1 1.9693 7.8974 1.2417 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601491831.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:22 Heat of formation + Delta-G solvation = -71.492412 kcal Electronic energy + Delta-G solvation = -20735.389150 eV Core-core repulsion = 17612.000183 eV Total energy + Delta-G solvation = -3123.388966 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.129 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.05184 -36.60423 -35.48785 -35.19957 -34.33813 -32.51513 -31.57970 -27.82206 -26.94393 -25.08102 -22.33562 -21.92785 -21.38175 -20.29663 -18.85288 -17.25672 -16.72668 -16.42569 -15.92545 -15.16896 -14.96206 -14.44987 -14.28276 -13.48422 -13.30734 -13.11972 -12.81684 -12.39966 -12.33433 -12.18529 -11.81971 -11.70196 -11.63174 -11.49954 -11.32842 -11.16190 -11.13183 -10.91668 -10.86810 -10.72549 -10.67072 -10.50336 -10.10305 -9.78699 -9.58929 -8.53822 -8.48736 -8.05602 -6.14439 -4.21099 1.29126 3.21698 3.28723 3.29217 3.50805 4.11499 4.26804 4.32318 4.80677 5.08729 5.13627 5.15797 5.19369 5.32690 5.37197 5.50178 5.56576 5.69529 5.74454 5.87525 5.92885 6.06875 6.08236 6.08621 6.20960 6.27777 6.36676 6.41023 6.53638 6.60756 6.83856 7.26347 7.35306 7.45431 7.64530 7.83307 8.12169 8.84988 9.44515 10.93306 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.011983 B = 0.009032 C = 0.005898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.171033 B = 3099.278544 C = 4746.444324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.092 4.092 4 C -0.168 4.168 5 H 0.100 0.900 6 C -0.185 4.185 7 C 0.109 3.891 8 H 0.158 0.842 9 N -1.100 6.100 10 S 2.790 3.210 11 O -0.976 6.976 12 O -1.002 7.002 13 N -0.996 5.996 14 C 0.108 3.892 15 C 0.241 3.759 16 C -0.544 4.544 17 H 0.068 0.932 18 C 0.066 3.934 19 N -0.887 5.887 20 Si 0.889 3.111 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.272 1.272 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.405 0.595 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.038 0.962 38 H 0.052 0.948 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.658 -11.089 0.593 11.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.130 4.130 4 C -0.189 4.189 5 H 0.118 0.882 6 C -0.224 4.224 7 C 0.001 3.999 8 H 0.176 0.824 9 N -0.854 5.854 10 S 2.797 3.203 11 O -0.960 6.960 12 O -0.987 6.987 13 N -0.838 5.838 14 C -0.039 4.039 15 C 0.119 3.881 16 C -0.583 4.583 17 H 0.087 0.913 18 C -0.137 4.137 19 N -0.525 5.525 20 Si 0.717 3.283 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.198 1.198 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.237 0.763 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.481 -10.698 -0.383 10.807 hybrid contribution -0.157 -0.631 1.577 1.706 sum 1.324 -11.330 1.194 11.469 Atomic orbital electron populations 1.21788 0.96163 1.01136 1.02022 1.21490 0.95483 0.97049 1.01633 1.21218 0.92431 0.96562 1.02780 1.22871 0.95065 0.98023 1.02962 0.88154 1.23490 1.02166 1.04237 0.92532 1.21737 0.86566 0.97366 0.94218 0.82433 1.55646 1.28534 1.34671 1.66544 1.01636 0.72591 0.72503 0.73524 1.93585 1.51293 1.83700 1.67399 1.93546 1.42635 1.85704 1.76776 1.57580 1.16023 1.46069 1.64164 1.21201 0.82968 1.00170 0.99558 1.19265 0.81839 0.90544 0.96486 1.21614 1.13283 1.15060 1.08342 0.91347 1.24950 0.96690 0.94818 0.97281 1.69924 1.23324 1.19976 1.39294 0.86708 0.78794 0.79062 0.83767 1.20212 1.21285 1.19762 0.93144 0.92744 0.92642 0.92264 0.92219 0.91458 0.91163 0.89171 0.88208 0.76324 0.93782 0.90805 0.92934 0.94392 0.93031 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 37.16 0.37 -1.25 16 2 C -0.12 -1.35 5.89 -26.73 -0.16 -1.51 16 3 C -0.09 -1.28 5.50 -26.73 -0.15 -1.43 16 4 C -0.17 -2.43 5.66 -90.58 -0.51 -2.94 16 5 H 0.10 1.29 8.07 -51.93 -0.42 0.87 16 6 C -0.18 -2.79 10.11 -26.69 -0.27 -3.06 16 7 C 0.11 1.89 5.04 -67.93 -0.34 1.55 16 8 H 0.16 3.25 6.44 -51.93 -0.33 2.92 16 9 N -1.10 -18.21 6.10 -4.89 -0.03 -18.24 16 10 S 2.79 55.27 6.08 -107.50 -0.65 54.62 16 11 O -0.98 -22.65 16.45 -57.17 -0.94 -23.59 16 12 O -1.00 -20.56 17.21 -57.17 -0.98 -21.54 16 13 N -1.00 -20.37 3.23 -123.05 -0.40 -20.76 16 14 C 0.11 1.85 10.31 59.85 0.62 2.46 16 15 C 0.24 5.83 5.41 -5.19 -0.03 5.80 16 16 C -0.54 -13.49 7.37 -34.44 -0.25 -13.74 16 17 H 0.07 1.62 7.05 -52.49 -0.37 1.25 16 18 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -24.57 13.29 55.43 0.74 -23.84 16 20 Si 0.89 19.81 29.54 -169.99 -5.02 14.79 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.98 7.88 -51.93 -0.41 0.58 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.10 1.59 8.03 -51.93 -0.42 1.18 16 33 H 0.41 5.49 8.96 -34.47 -0.31 5.18 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 36 H 0.05 0.79 7.79 -51.93 -0.40 0.39 16 37 H 0.04 0.96 8.11 -51.93 -0.42 0.54 16 38 H 0.05 1.37 6.91 -51.93 -0.36 1.01 16 39 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 334.64 15.07 5.04 5.04 Total: -1.00 -29.90 334.64 -9.45 -39.35 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -6.38 Total: 6.67 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -0.82 Total: -12.49 kcal Atomic # 7 Polarization: -63.15 SS G_CDS: 0.31 Total: -62.84 kcal Atomic # 8 Polarization: -43.21 SS G_CDS: -1.92 Total: -45.13 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Atomic # 16 Polarization: 55.27 SS G_CDS: -0.65 Total: 54.62 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.90 -9.45 -39.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601491831.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.139 kcal (2) G-P(sol) polarization free energy of solvation -29.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds