Wall clock time and date at job start Mon Mar 30 2020 20:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47292 * 2 1 4 4 C 1.53001 * 109.47292 * 180.02562 * 3 2 1 5 5 H 1.09003 * 115.54804 * 29.33199 * 4 3 2 6 6 C 1.53075 * 117.51230 * 243.60971 * 4 3 2 7 7 C 1.52998 * 117.49626 * 175.00245 * 4 3 2 8 8 H 1.09000 * 117.50434 * 359.97438 * 7 4 3 9 9 N 1.46500 * 117.49475 * 215.00234 * 7 4 3 10 10 S 1.65606 * 120.00055 * 145.09078 * 9 7 4 11 11 O 1.42105 * 106.40008 * 311.45637 * 10 9 7 12 12 O 1.42098 * 106.40370 * 178.53822 * 10 9 7 13 13 N 1.65595 * 107.22013 * 64.99549 * 10 9 7 14 14 C 1.46498 * 119.99850 * 89.99911 * 13 10 9 15 15 C 1.46498 * 120.00275 * 270.00200 * 13 10 9 16 16 C 1.50703 * 109.46907 * 94.99986 * 15 13 10 17 17 H 1.08001 * 120.00049 * 359.97438 * 16 15 13 18 18 C 1.37880 * 119.99988 * 180.02562 * 16 15 13 19 19 N 1.31513 * 119.99970 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00266 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47090 * 59.99813 * 20 18 16 22 22 H 1.48499 * 109.47376 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46868 * 300.00174 * 20 18 16 24 24 H 1.08995 * 109.47242 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47324 * 300.00147 * 1 2 3 26 26 H 1.09006 * 109.47007 * 59.99656 * 1 2 3 27 27 H 1.09003 * 109.46983 * 240.00300 * 2 1 3 28 28 H 1.08990 * 109.47270 * 120.00183 * 2 1 3 29 29 H 1.09002 * 109.46831 * 59.99670 * 3 2 1 30 30 H 1.09006 * 109.47376 * 300.00118 * 3 2 1 31 31 H 1.08994 * 117.50999 * 145.04435 * 6 4 3 32 32 H 1.08996 * 117.49447 * 0.02562 * 6 4 3 33 33 H 0.97002 * 120.00335 * 325.09118 * 9 7 4 34 34 H 1.09003 * 109.47325 * 90.00198 * 14 13 10 35 35 H 1.09004 * 109.47539 * 209.99910 * 14 13 10 36 36 H 1.08996 * 109.47424 * 330.00527 * 14 13 10 37 37 H 1.09001 * 109.47378 * 214.99601 * 15 13 10 38 38 H 1.09002 * 109.46925 * 335.00342 * 15 13 10 39 39 H 0.97003 * 120.00349 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 1 4.0400 0.5852 -0.4827 6 6 4.2777 2.0458 1.2153 7 6 4.2764 2.7945 -0.1190 8 1 3.6512 3.6840 -0.1968 9 7 5.5326 2.8378 -0.8715 10 16 5.9119 4.1738 -1.7735 11 8 4.7596 4.4751 -2.5486 12 8 7.1888 3.9233 -2.3443 13 7 6.1101 5.4362 -0.7202 14 6 7.4308 5.7145 -0.1506 15 6 4.9647 6.2747 -0.3580 16 6 4.3581 5.7691 0.9256 17 1 4.7830 4.9090 1.4216 18 6 3.2600 6.4040 1.4661 19 7 2.7417 7.4505 0.8613 20 14 2.5076 5.7770 3.0568 21 1 3.5224 5.8313 4.1395 22 1 1.3459 6.6262 3.4234 23 1 2.0560 4.3745 2.8715 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 5.2131 1.5854 1.5332 32 1 3.6530 2.4421 2.0157 33 1 6.1422 2.0838 -0.8416 34 1 7.9667 6.4088 -0.7979 35 1 7.3140 6.1568 0.8388 36 1 7.9945 4.7852 -0.0690 37 1 5.2964 7.3041 -0.2223 38 1 4.2195 6.2347 -1.1525 39 1 1.9693 7.8974 1.2417 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601491831.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:22 Heat of formation + Delta-G solvation = -92.052320 kcal Electronic energy + Delta-G solvation = -20736.280694 eV Core-core repulsion = 17612.000183 eV Total energy + Delta-G solvation = -3124.280511 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.129 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.29579 -38.27355 -37.19666 -36.90363 -35.39745 -34.44638 -32.83278 -29.64659 -27.97540 -26.74976 -24.19252 -23.10109 -22.48405 -21.47763 -20.39343 -18.87940 -18.49895 -18.14954 -17.41218 -16.75298 -16.21770 -15.95484 -15.52051 -15.12134 -14.88104 -14.26395 -14.07850 -13.93363 -13.82552 -13.53031 -13.39325 -13.20620 -13.11087 -13.02719 -12.85740 -12.79629 -12.59911 -12.41826 -12.33058 -11.95078 -11.91933 -11.79346 -11.67207 -11.60544 -10.82819 -10.52916 -9.81802 -9.73076 -8.13183 -6.25727 -0.30189 1.45965 1.46790 1.54061 1.97018 2.44952 2.60171 2.98440 3.18958 3.42363 3.80857 3.97269 4.04607 4.14489 4.26288 4.32796 4.34199 4.47972 4.69034 4.71993 4.84219 4.90517 4.98989 5.00499 5.07140 5.09252 5.20797 5.29559 5.39133 5.40165 5.45770 5.51930 5.57460 5.77018 5.88275 6.13593 6.23403 6.86754 7.43622 8.94922 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.011983 B = 0.009032 C = 0.005898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.171033 B = 3099.278544 C = 4746.444324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C -0.097 4.097 4 C -0.148 4.148 5 H 0.124 0.876 6 C -0.171 4.171 7 C 0.076 3.924 8 H 0.120 0.880 9 N -1.083 6.083 10 S 2.806 3.194 11 O -1.015 7.015 12 O -1.007 7.007 13 N -1.002 6.002 14 C 0.099 3.901 15 C 0.254 3.746 16 C -0.536 4.536 17 H 0.081 0.919 18 C 0.014 3.986 19 N -0.930 5.930 20 Si 0.949 3.051 21 H -0.268 1.268 22 H -0.294 1.294 23 H -0.256 1.256 24 H 0.067 0.933 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.115 0.885 32 H 0.091 0.909 33 H 0.422 0.578 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.399 -13.706 1.967 14.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.135 4.135 4 C -0.168 4.168 5 H 0.142 0.858 6 C -0.211 4.211 7 C -0.032 4.032 8 H 0.138 0.862 9 N -0.841 5.841 10 S 2.813 3.187 11 O -0.999 6.999 12 O -0.991 6.991 13 N -0.844 5.844 14 C -0.047 4.047 15 C 0.130 3.870 16 C -0.575 4.575 17 H 0.099 0.901 18 C -0.186 4.186 19 N -0.569 5.569 20 Si 0.774 3.226 21 H -0.193 1.193 22 H -0.220 1.220 23 H -0.180 1.180 24 H 0.086 0.914 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.133 0.867 32 H 0.110 0.890 33 H 0.258 0.742 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.265 -13.341 0.991 13.568 hybrid contribution -0.349 0.170 1.099 1.166 sum 1.916 -13.171 2.090 13.473 Atomic orbital electron populations 1.21800 0.95685 1.02142 1.01606 1.21455 0.95921 0.95086 1.02609 1.21274 0.92363 0.98319 1.01576 1.22976 0.95192 0.96677 1.01976 0.85764 1.23544 1.03089 1.02970 0.91455 1.21569 0.86964 0.97829 0.96885 0.86236 1.55149 1.28770 1.34197 1.66024 1.00972 0.71709 0.72696 0.73282 1.93537 1.52926 1.84512 1.68929 1.93531 1.42622 1.85855 1.77117 1.57487 1.16284 1.46163 1.64430 1.21450 0.81576 1.01923 0.99728 1.18842 0.82382 0.90280 0.95475 1.21845 1.12850 1.14772 1.07998 0.90100 1.25762 0.97330 0.94972 1.00500 1.70068 1.24054 1.21658 1.41154 0.85745 0.77825 0.79130 0.79930 1.19267 1.21970 1.17980 0.91417 0.93136 0.93176 0.91318 0.91108 0.92539 0.92658 0.86685 0.89048 0.74196 0.92646 0.90669 0.90366 0.96253 0.96327 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.91 71.98 0.71 -2.23 16 2 C -0.11 -2.28 5.89 30.59 0.18 -2.10 16 3 C -0.10 -2.58 5.50 30.59 0.17 -2.41 16 4 C -0.15 -3.89 5.66 -10.77 -0.06 -3.95 16 5 H 0.12 2.71 8.07 -2.39 -0.02 2.69 16 6 C -0.17 -4.68 10.11 30.62 0.31 -4.37 16 7 C 0.08 2.53 5.04 44.99 0.23 2.76 16 8 H 0.12 5.03 6.44 -2.39 -0.02 5.01 16 9 N -1.08 -34.07 6.10 -169.39 -1.03 -35.10 16 10 S 2.81 110.18 6.08 -56.49 -0.34 109.84 16 11 O -1.02 -48.35 16.45 -128.00 -2.11 -50.45 16 12 O -1.01 -39.90 17.21 -128.00 -2.20 -42.10 16 13 N -1.00 -40.92 3.23 -543.22 -1.75 -42.67 16 14 C 0.10 3.25 10.31 127.77 1.32 4.57 16 15 C 0.25 12.66 5.41 85.63 0.46 13.13 16 16 C -0.54 -26.76 7.37 25.60 0.19 -26.58 16 17 H 0.08 3.76 7.05 -2.91 -0.02 3.74 16 18 C 0.01 0.72 5.46 84.66 0.46 1.18 16 19 N -0.93 -53.01 13.29 21.45 0.28 -52.72 16 20 Si 0.95 40.43 29.54 68.60 2.03 42.46 16 21 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 22 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 23 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 24 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 27 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.06 1.60 7.88 -2.39 -0.02 1.58 16 30 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.09 2.68 8.03 -2.39 -0.02 2.66 16 33 H 0.42 10.22 8.96 -96.74 -0.87 9.35 16 34 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.07 2.45 8.07 -2.39 -0.02 2.43 16 36 H 0.08 2.16 7.79 -2.39 -0.02 2.14 16 37 H 0.02 1.02 8.11 -2.39 -0.02 1.00 16 38 H 0.02 1.05 6.91 -2.39 -0.02 1.03 16 39 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -64.94 334.64 -1.00 -65.94 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 0.16 Total: 24.84 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: 3.97 Total: -20.01 kcal Atomic # 7 Polarization: -128.00 SS G_CDS: -2.50 Total: -130.50 kcal Atomic # 8 Polarization: -88.25 SS G_CDS: -4.31 Total: -92.56 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Atomic # 16 Polarization: 110.18 SS G_CDS: -0.34 Total: 109.84 kcal Total: -64.94 -1.00 -65.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601491831.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.116 kcal (2) G-P(sol) polarization free energy of solvation -64.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds