Wall clock time and date at job start Mon Mar 30 2020 20:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50704 * 119.99780 * 2 1 4 4 N 1.46497 * 109.47054 * 125.00014 * 3 2 1 5 5 C 1.46498 * 119.99683 * 263.22135 * 4 3 2 6 6 C 1.50699 * 109.47384 * 269.99666 * 5 4 3 7 7 H 1.08004 * 119.99862 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00656 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99640 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00455 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47166 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47219 * 119.99909 * 10 8 6 13 13 H 1.48496 * 109.47198 * 239.99863 * 10 8 6 14 14 C 1.34776 * 120.00404 * 83.22328 * 4 3 2 15 15 O 1.21682 * 120.00498 * 183.95671 * 14 4 3 16 16 C 1.46728 * 119.99573 * 3.95479 * 14 4 3 17 17 C 1.36340 * 126.64083 * 173.39281 * 16 14 4 18 18 N 1.33696 * 107.45056 * 179.97438 * 17 16 14 19 19 C 1.30614 * 108.99465 * 359.97438 * 18 17 16 20 20 C 1.50705 * 125.42332 * 179.97438 * 19 18 17 21 21 C 1.53007 * 117.49736 * 351.28205 * 20 19 18 22 22 C 1.53006 * 117.49331 * 59.93897 * 20 19 18 23 23 O 1.33668 * 109.15690 * 0.24755 * 19 18 17 24 24 H 1.08006 * 120.00225 * 179.97438 * 1 2 3 25 25 H 1.08000 * 120.00268 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.00268 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.47020 * 4.99766 * 3 2 1 28 28 H 1.09003 * 109.47027 * 244.99987 * 3 2 1 29 29 H 1.08992 * 109.47409 * 30.00420 * 5 4 3 30 30 H 1.09004 * 109.47079 * 150.00129 * 5 4 3 31 31 H 0.96995 * 120.00259 * 180.02562 * 9 8 6 32 32 H 1.07995 * 126.27422 * 359.97438 * 17 16 14 33 33 H 1.08997 * 115.55320 * 205.61039 * 20 19 18 34 34 H 1.09000 * 117.49576 * 214.99927 * 21 20 19 35 35 H 1.09002 * 117.49725 * 0.02562 * 21 20 19 36 36 H 1.08992 * 117.49966 * 359.97438 * 22 20 19 37 37 H 1.09004 * 117.49467 * 144.98007 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.6107 1.9980 2.3788 6 6 3.0299 3.4445 2.3252 7 1 3.5311 3.8294 1.4493 8 6 2.7737 4.2767 3.3942 9 7 2.1639 3.8079 4.4611 10 14 3.2927 6.0699 3.3275 11 1 3.9558 6.3452 2.0276 12 1 2.0954 6.9372 3.4664 13 1 4.2400 6.3526 4.4355 14 6 4.2017 0.7440 1.0247 15 8 4.9457 0.7033 1.9868 16 6 4.6198 0.1530 -0.2515 17 6 5.8481 -0.3594 -0.5474 18 7 5.8074 -0.7943 -1.8109 19 6 4.6161 -0.5728 -2.2986 20 6 4.1656 -0.9184 -3.6946 21 6 5.2319 -1.3932 -4.6838 22 6 4.2210 -2.3897 -4.1108 23 8 3.8619 0.0146 -1.3643 24 1 -0.5401 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3584 2.1317 0.0895 28 1 2.6212 1.4027 -0.9314 29 1 1.5300 1.9373 2.5062 30 1 3.1036 1.5078 3.2185 31 1 1.9833 4.3933 5.2130 32 1 6.6981 -0.4055 0.1172 33 1 3.3477 -0.3146 -4.0877 34 1 5.1154 -1.1017 -5.7276 35 1 6.2592 -1.4560 -4.3247 36 1 4.5836 -3.1075 -3.3751 37 1 3.4393 -2.7539 -4.7775 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603060141.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:25 Heat of formation + Delta-G solvation = 44.258373 kcal Electronic energy + Delta-G solvation = -21191.055588 eV Core-core repulsion = 17937.242001 eV Total energy + Delta-G solvation = -3253.813587 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.30619 -39.00808 -37.48487 -35.97463 -34.54250 -33.29346 -32.15001 -30.27025 -27.69343 -25.78015 -24.74665 -23.63268 -22.71589 -22.03439 -20.72384 -20.14658 -19.30788 -17.45043 -16.78300 -16.65768 -16.46873 -15.60000 -15.01378 -14.82053 -14.65641 -14.34741 -14.18287 -13.51113 -13.04639 -12.68359 -12.53356 -12.27144 -11.89626 -11.74785 -11.52901 -11.37631 -11.07978 -10.98232 -10.95241 -10.92491 -10.71490 -10.55935 -10.26499 -9.71958 -9.47120 -9.19437 -8.71122 -8.49433 -7.84432 -6.10554 -4.16208 1.04416 2.40712 2.45548 2.50225 3.26964 3.34679 3.38453 3.54559 3.60112 3.74945 4.04705 4.39867 4.44877 4.57568 4.66369 4.99752 5.11806 5.22360 5.24690 5.32638 5.38701 5.41318 5.57010 5.66658 5.74903 5.80843 5.86158 6.03099 6.19195 6.34359 6.78301 6.84081 6.97323 7.30707 7.39123 7.66537 7.85079 8.13008 8.17067 8.66997 8.90059 9.49168 10.97603 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.023034 B = 0.004698 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.320340 B = 5958.798404 C = 6425.927320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.158 4.158 3 C 0.132 3.868 4 N -0.577 5.577 5 C 0.246 3.754 6 C -0.531 4.531 7 H 0.059 0.941 8 C 0.063 3.937 9 N -0.892 5.892 10 Si 0.900 3.100 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.592 3.408 15 O -0.515 6.515 16 C -0.086 4.086 17 C 0.033 3.967 18 N -0.487 5.487 19 C 0.223 3.777 20 C -0.081 4.081 21 C -0.147 4.147 22 C -0.155 4.155 23 O -0.174 6.174 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.038 0.962 30 H 0.049 0.951 31 H 0.264 0.736 32 H 0.195 0.805 33 H 0.135 0.865 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.203 -10.274 -17.237 20.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.178 4.178 3 C 0.009 3.991 4 N -0.306 5.306 5 C 0.127 3.873 6 C -0.570 4.570 7 H 0.077 0.923 8 C -0.139 4.139 9 N -0.531 5.531 10 Si 0.727 3.273 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.377 3.623 15 O -0.393 6.393 16 C -0.141 4.141 17 C -0.109 4.109 18 N -0.216 5.216 19 C 0.018 3.982 20 C -0.100 4.100 21 C -0.184 4.184 22 C -0.193 4.193 23 O -0.061 6.061 24 H 0.113 0.887 25 H 0.118 0.882 26 H 0.119 0.881 27 H 0.111 0.889 28 H 0.101 0.899 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.212 0.788 33 H 0.152 0.848 34 H 0.125 0.875 35 H 0.130 0.870 36 H 0.120 0.880 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.511 -10.453 -16.848 19.834 hybrid contribution -0.349 1.365 0.518 1.502 sum 0.162 -9.088 -16.330 18.689 Atomic orbital electron populations 1.23794 0.95675 1.01765 1.01005 1.23328 0.96251 0.98710 0.99473 1.20799 0.93003 0.95624 0.89718 1.48210 1.13277 1.52457 1.16660 1.19444 0.96333 0.91923 0.79579 1.21447 1.38950 0.94152 1.02470 0.92255 1.24928 0.94927 0.99061 0.95012 1.69943 1.41369 1.36020 1.05737 0.86415 0.78325 0.84327 0.78222 1.19758 1.20876 1.20761 1.16499 0.82930 0.79063 0.83847 1.90866 1.53013 1.59527 1.35866 1.23839 0.92707 1.09321 0.88275 1.23497 0.97541 0.97625 0.92284 1.70273 1.19632 1.22195 1.09518 1.25311 0.85560 0.94780 0.92549 1.20093 1.04035 1.00160 0.85753 1.23108 0.96490 1.01252 0.97548 1.23133 1.02347 0.90519 1.03251 1.84723 1.41058 1.60199 1.20099 0.88718 0.88233 0.88092 0.88892 0.89877 0.94379 0.93342 0.92632 0.78822 0.84767 0.87507 0.87046 0.88002 0.87423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.45 14.32 29.02 0.42 -2.04 16 2 C -0.16 -2.42 8.97 -36.02 -0.32 -2.74 16 3 C 0.13 2.30 5.45 -5.19 -0.03 2.27 16 4 N -0.58 -12.61 2.46 -177.97 -0.44 -13.05 16 5 C 0.25 6.40 5.16 -5.19 -0.03 6.37 16 6 C -0.53 -14.93 9.39 -34.44 -0.32 -15.26 16 7 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 8 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 10 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 C 0.59 12.98 7.58 -12.83 -0.10 12.89 16 15 O -0.51 -12.98 16.46 5.21 0.09 -12.90 16 16 C -0.09 -1.55 6.76 -36.84 -0.25 -1.80 16 17 C 0.03 0.55 11.67 -17.42 -0.20 0.35 16 18 N -0.49 -7.41 10.79 -10.81 -0.12 -7.53 16 19 C 0.22 3.07 7.86 -12.79 -0.10 2.97 16 20 C -0.08 -0.77 6.33 -91.76 -0.58 -1.35 16 21 C -0.15 -1.12 10.13 -26.69 -0.27 -1.39 16 22 C -0.15 -1.15 10.24 -26.69 -0.27 -1.43 16 23 O -0.17 -2.73 6.69 4.42 0.03 -2.70 16 24 H 0.09 1.08 8.06 -52.48 -0.42 0.66 16 25 H 0.10 1.27 7.84 -52.49 -0.41 0.86 16 26 H 0.10 1.55 7.86 -52.49 -0.41 1.14 16 27 H 0.09 1.62 7.67 -51.93 -0.40 1.22 16 28 H 0.08 1.36 5.43 -51.93 -0.28 1.08 16 29 H 0.04 1.00 8.07 -51.93 -0.42 0.58 16 30 H 0.05 1.41 7.37 -51.93 -0.38 1.03 16 31 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.19 2.91 8.06 -52.49 -0.42 2.49 16 33 H 0.13 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.11 1.00 7.87 -51.93 -0.41 0.59 16 36 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 326.78 15.07 4.92 4.92 Total: -1.00 -32.27 326.78 -6.75 -39.02 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -4.80 Total: 0.49 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -2.16 Total: 0.54 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.18 Total: -46.02 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: 0.12 Total: -15.60 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.27 -6.75 -39.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603060141.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.280 kcal (2) G-P(sol) polarization free energy of solvation -32.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds