Wall clock time and date at job start Mon Mar 30 2020 20:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 N 1.46502 * 109.47040 * 240.00151 * 2 1 3 5 5 C 1.34771 * 120.00078 * 59.99815 * 4 2 1 6 6 O 1.21684 * 120.00167 * 0.02562 * 5 4 2 7 7 C 1.46378 * 119.99841 * 180.02562 * 5 4 2 8 8 H 1.07996 * 120.00161 * 359.97438 * 7 5 4 9 9 C 1.40051 * 119.99915 * 180.02562 * 7 5 4 10 10 N 1.30671 * 120.00272 * 359.97438 * 9 7 5 11 11 Si 1.86801 * 120.00040 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47162 * 59.99503 * 11 9 7 13 13 H 1.48499 * 109.47347 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47101 * 299.99855 * 11 9 7 15 15 C 1.50701 * 109.47118 * 120.00168 * 2 1 3 16 16 O 1.21287 * 119.99646 * 265.00036 * 15 2 1 17 17 N 1.34773 * 119.99846 * 84.99740 * 15 2 1 18 18 C 1.39925 * 119.99621 * 184.59327 * 17 15 2 19 19 C 1.38879 * 120.07158 * 144.91681 * 18 17 15 20 20 C 1.38111 * 119.92935 * 179.97438 * 19 18 17 21 21 C 1.38281 * 120.07151 * 359.97438 * 20 19 18 22 22 C 1.38285 * 120.14114 * 0.03955 * 21 20 19 23 23 C 1.38115 * 120.07249 * 359.95549 * 22 21 20 24 24 H 1.08999 * 109.47009 * 300.00156 * 1 2 3 25 25 H 1.09004 * 109.47120 * 59.99965 * 1 2 3 26 26 H 1.09000 * 109.47352 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46946 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.46648 * 299.99901 * 3 2 1 29 29 H 1.08994 * 109.46792 * 60.00160 * 3 2 1 30 30 H 0.97004 * 119.99923 * 240.00338 * 4 2 1 31 31 H 0.96998 * 120.00551 * 180.02562 * 10 9 7 32 32 H 0.96998 * 120.00240 * 4.59533 * 17 15 2 33 33 H 1.08001 * 120.03312 * 359.69930 * 19 18 17 34 34 H 1.07999 * 119.96514 * 179.97438 * 20 19 18 35 35 H 1.07996 * 119.92897 * 179.97438 * 21 20 19 36 36 H 1.07996 * 119.96192 * 179.97438 * 22 21 20 37 37 H 1.07994 * 120.03622 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 1.6927 -0.2301 -2.4203 6 8 0.9935 0.7595 -2.5319 7 6 2.1801 -0.9205 -3.6154 8 1 2.8010 -1.7986 -3.5163 9 6 1.8422 -0.4417 -4.8874 10 7 1.0914 0.6210 -5.0074 11 14 2.4637 -1.3231 -6.4126 12 1 1.9672 -2.7227 -6.4124 13 1 1.9689 -0.6230 -7.6252 14 1 3.9487 -1.3248 -6.4128 15 6 2.0323 -0.7104 1.2305 16 8 2.3207 -0.0748 2.2224 17 7 2.1610 -2.0520 1.2286 18 6 2.5349 -2.7205 2.3996 19 6 2.0126 -3.9762 2.6811 20 6 2.3842 -4.6336 3.8375 21 6 3.2757 -4.0431 4.7143 22 6 3.7973 -2.7928 4.4370 23 6 3.4299 -2.1302 3.2823 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 2.5759 -1.4793 -1.1072 31 1 0.8570 0.9524 -5.8883 32 1 1.9943 -2.5541 0.4156 33 1 1.3132 -4.4361 1.9987 34 1 1.9781 -5.6099 4.0572 35 1 3.5643 -4.5591 5.6180 36 1 4.4931 -2.3342 5.1240 37 1 3.8373 -1.1536 3.0665 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613946469.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:31 Heat of formation + Delta-G solvation = -44.672507 kcal Electronic energy + Delta-G solvation = -21202.717263 eV Core-core repulsion = 17945.047343 eV Total energy + Delta-G solvation = -3257.669919 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.69688 -38.78597 -37.47114 -34.76870 -34.33157 -32.44457 -30.95114 -30.38567 -29.52086 -26.65913 -26.15748 -24.11807 -22.81563 -21.70728 -20.49027 -18.88203 -18.20273 -17.36490 -16.63653 -16.14099 -15.41370 -15.23365 -14.80079 -14.36543 -14.06747 -13.82146 -13.49318 -13.35958 -13.18857 -12.79352 -12.59110 -12.12608 -11.81301 -11.63234 -11.58258 -11.29362 -11.22640 -11.08740 -11.03478 -10.57266 -10.55701 -10.32600 -10.30503 -9.56098 -8.96213 -8.93048 -8.17091 -7.76248 -7.61965 -6.27373 -4.75012 1.23041 1.36650 2.67033 3.09260 3.10476 3.16240 3.17316 3.79317 4.01323 4.47443 4.51261 4.80154 4.89484 4.94540 5.10459 5.35687 5.45099 5.48911 5.55770 5.60515 5.83479 5.97076 6.15217 6.24865 6.28488 6.33667 6.39687 6.46641 6.50025 6.52431 6.91301 6.98522 7.03474 7.33674 7.35810 7.69242 7.87841 8.16588 8.20882 8.92867 9.33821 10.48002 10.65808 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.024881 B = 0.004348 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.083791 B = 6438.152599 C = 7131.858670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.176 3.824 3 C -0.145 4.145 4 N -0.763 5.763 5 C 0.560 3.440 6 O -0.568 6.568 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.090 3.910 10 N -0.764 5.764 11 Si 0.908 3.092 12 H -0.268 1.268 13 H -0.280 1.280 14 H -0.268 1.268 15 C 0.523 3.477 16 O -0.520 6.520 17 N -0.675 5.675 18 C 0.151 3.849 19 C -0.148 4.148 20 C -0.103 4.103 21 C -0.142 4.142 22 C -0.104 4.104 23 C -0.123 4.123 24 H 0.053 0.947 25 H 0.101 0.899 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.095 0.905 29 H 0.057 0.943 30 H 0.377 0.623 31 H 0.270 0.730 32 H 0.414 0.586 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.777 -9.095 12.900 16.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.086 3.914 3 C -0.204 4.204 4 N -0.421 5.421 5 C 0.365 3.635 6 O -0.450 6.450 7 C -0.582 4.582 8 H 0.085 0.915 9 C -0.131 4.131 10 N -0.392 5.392 11 Si 0.732 3.268 12 H -0.193 1.193 13 H -0.205 1.205 14 H -0.193 1.193 15 C 0.311 3.689 16 O -0.394 6.394 17 N -0.321 5.321 18 C 0.057 3.943 19 C -0.168 4.168 20 C -0.122 4.122 21 C -0.161 4.161 22 C -0.122 4.122 23 C -0.143 4.143 24 H 0.072 0.928 25 H 0.120 0.880 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.113 0.887 29 H 0.076 0.924 30 H 0.209 0.791 31 H 0.081 0.919 32 H 0.252 0.748 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.323 -7.686 13.353 15.581 hybrid contribution 0.519 -1.227 -1.066 1.706 sum 2.842 -8.913 12.288 15.444 Atomic orbital electron populations 1.22182 0.92856 1.02105 1.04132 1.20143 0.95449 0.93423 0.82417 1.22055 1.00580 0.94107 1.03615 1.46431 1.58019 1.32856 1.04830 1.18133 0.80226 0.84262 0.80852 1.90542 1.41287 1.27873 1.85297 1.20822 1.34126 1.13798 0.89452 0.91494 1.25669 0.93341 0.94114 0.99964 1.69981 1.26554 1.18315 1.24388 0.86433 0.79775 0.80022 0.80540 1.19295 1.20537 1.19294 1.21340 0.75833 0.81306 0.90456 1.90648 1.47889 1.65796 1.35067 1.43765 1.68333 1.07958 1.12054 1.17880 0.95208 0.92702 0.88549 1.20964 1.01613 0.95361 0.98879 1.20912 0.97783 0.99657 0.93842 1.21104 0.99048 0.95964 0.99955 1.21063 0.99598 0.94787 0.96776 1.21353 0.96667 1.01326 0.94943 0.92834 0.88008 0.93124 0.93234 0.88666 0.92414 0.79077 0.91926 0.74806 0.85650 0.85857 0.86223 0.85903 0.84318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.38 37.16 0.31 -2.55 16 2 C 0.18 3.33 0.99 -132.97 -0.13 3.20 16 3 C -0.14 -2.88 7.93 37.16 0.29 -2.59 16 4 N -0.76 -15.57 4.86 -50.08 -0.24 -15.81 16 5 C 0.56 14.49 7.17 -12.99 -0.09 14.40 16 6 O -0.57 -16.42 11.22 5.20 0.06 -16.36 16 7 C -0.55 -14.35 9.54 -35.63 -0.34 -14.69 16 8 H 0.07 1.61 7.85 -52.49 -0.41 1.20 16 9 C 0.09 2.36 5.50 -17.37 -0.10 2.26 16 10 N -0.76 -21.64 11.83 55.55 0.66 -20.98 16 11 Si 0.91 19.22 29.56 -169.99 -5.02 14.20 16 12 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 13 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 14 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 15 C 0.52 9.00 6.49 -10.99 -0.07 8.93 16 16 O -0.52 -9.91 13.53 5.55 0.08 -9.83 16 17 N -0.68 -9.71 5.10 -9.86 -0.05 -9.76 16 18 C 0.15 2.09 6.30 -83.69 -0.53 1.56 16 19 C -0.15 -1.71 9.97 -39.39 -0.39 -2.10 16 20 C -0.10 -1.05 10.04 -39.61 -0.40 -1.45 16 21 C -0.14 -1.44 10.04 -39.55 -0.40 -1.84 16 22 C -0.10 -1.20 10.04 -39.61 -0.40 -1.59 16 23 C -0.12 -1.73 8.70 -39.39 -0.34 -2.07 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.10 2.22 6.16 -51.93 -0.32 1.90 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.09 2.16 6.16 -51.93 -0.32 1.84 16 29 H 0.06 1.06 7.87 -51.93 -0.41 0.65 16 30 H 0.38 6.71 7.14 -40.82 -0.29 6.42 16 31 H 0.27 7.01 8.29 -40.82 -0.34 6.67 16 32 H 0.41 5.28 7.42 -40.82 -0.30 4.98 16 33 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 34 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 35 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 37 H 0.14 2.17 6.23 -52.49 -0.33 1.84 16 LS Contribution 312.29 15.07 4.71 4.71 Total: -1.00 -31.74 312.29 -6.88 -38.62 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -4.48 Total: 13.76 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -2.58 Total: 1.47 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.36 Total: -46.55 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: 0.13 Total: -26.19 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.20 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.74 -6.88 -38.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613946469.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.057 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds