Wall clock time and date at job start Mon Mar 30 2020 20:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47011 * 2 1 4 4 C 1.50697 * 109.46859 * 119.99894 * 2 1 3 5 5 O 1.21318 * 119.99751 * 239.99754 * 4 2 1 6 6 N 1.34774 * 120.00360 * 60.00330 * 4 2 1 7 7 N 1.40099 * 120.00172 * 179.97438 * 6 4 2 8 8 C 1.29831 * 119.99894 * 179.97438 * 7 6 4 9 9 C 1.47358 * 119.99732 * 180.02562 * 8 7 6 10 10 C 1.39819 * 120.08493 * 179.97438 * 9 8 7 11 11 C 1.37708 * 119.91100 * 180.02562 * 10 9 8 12 12 C 1.39079 * 120.08784 * 0.02562 * 11 10 9 13 13 O 1.35656 * 119.91177 * 179.97438 * 12 11 10 14 14 C 1.34806 * 117.00164 * 5.54986 * 13 12 11 15 15 H 1.08001 * 120.00113 * 354.94776 * 14 13 12 16 16 C 1.38637 * 120.00112 * 174.94530 * 14 13 12 17 17 N 1.31565 * 120.00188 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00052 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47235 * 59.99785 * 18 16 14 20 20 H 1.48505 * 109.47180 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47143 * 299.99926 * 18 16 14 22 22 C 1.39078 * 120.17838 * 0.23261 * 12 11 10 23 23 C 1.37713 * 120.08454 * 359.48683 * 22 12 11 24 24 H 1.08998 * 109.47317 * 60.00612 * 1 2 3 25 25 H 1.09003 * 109.46966 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47369 * 300.00001 * 1 2 3 27 27 H 1.09005 * 109.46968 * 239.99937 * 2 1 3 28 28 H 1.09005 * 109.46771 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.46832 * 299.99868 * 3 2 1 30 30 H 1.08999 * 109.47055 * 59.99807 * 3 2 1 31 31 H 0.97002 * 119.99936 * 359.97438 * 6 4 2 32 32 H 1.08001 * 120.00058 * 0.02562 * 8 7 6 33 33 H 1.07996 * 120.04038 * 0.02562 * 10 9 8 34 34 H 1.07998 * 119.95890 * 179.97438 * 11 10 9 35 35 H 0.97001 * 119.99765 * 180.02562 * 17 16 14 36 36 H 1.07998 * 119.96098 * 179.74613 * 22 12 11 37 37 H 1.07995 * 120.04889 * 180.25570 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7298 -0.1208 2.0290 6 7 1.7067 -2.0007 1.4438 7 7 2.1741 -2.6612 2.5875 8 6 1.8601 -3.9041 2.7932 9 6 2.3513 -4.5987 3.9964 10 6 2.0138 -5.9370 4.2200 11 6 2.4743 -6.5824 5.3459 12 6 3.2737 -5.9047 6.2602 13 8 3.7250 -6.5438 7.3684 14 6 3.4595 -7.8619 7.4655 15 1 2.8411 -8.3444 6.7231 16 6 3.9803 -8.5982 8.5184 17 7 4.7341 -8.0107 9.4226 18 14 3.6131 -10.4248 8.6526 19 1 4.1189 -11.1217 7.4427 20 1 4.2825 -10.9772 9.8576 21 1 2.1463 -10.6279 8.7638 22 6 3.6073 -4.5719 6.0442 23 6 3.1554 -3.9210 4.9178 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6766 1.9563 0.8900 31 1 1.1488 -2.4721 0.8055 32 1 1.2389 -4.4289 2.0824 33 1 1.3927 -6.4637 3.5107 34 1 2.2137 -7.6160 5.5196 35 1 5.0988 -8.5260 10.1591 36 1 4.2248 -4.0478 6.7585 37 1 3.4182 -2.8873 4.7485 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744739161.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:46 Heat of formation + Delta-G solvation = -31.213820 kcal Electronic energy + Delta-G solvation = -19647.812382 eV Core-core repulsion = 16390.726075 eV Total energy + Delta-G solvation = -3257.086307 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.93508 -40.74600 -38.66215 -37.18183 -35.51319 -34.38442 -33.22220 -31.91322 -30.05815 -27.97939 -27.48961 -25.24188 -23.89507 -23.33782 -21.64835 -20.98626 -19.90307 -18.97605 -18.25266 -17.95357 -16.58819 -16.43808 -16.30060 -15.98431 -15.58966 -15.53728 -15.12782 -14.94149 -14.47513 -14.07016 -13.97133 -13.64248 -13.54311 -13.19553 -12.92468 -12.87354 -12.73952 -12.45596 -12.42004 -12.14032 -12.10173 -12.02492 -11.29958 -11.08086 -10.87247 -10.86416 -10.19476 -9.85093 -8.71550 -8.48405 -6.15946 0.00699 0.61165 1.27124 1.38219 1.50240 1.54883 1.56547 1.92462 2.18421 2.88008 3.19993 3.44795 3.49032 3.78494 3.92220 4.01157 4.02645 4.16640 4.30453 4.44391 4.52728 4.64886 4.75198 4.80925 4.86274 4.91716 4.99841 5.04650 5.15731 5.26579 5.29397 5.33019 5.55436 5.65181 5.65753 6.00430 6.11449 6.18639 6.59245 6.95485 7.49156 7.73652 8.74011 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.056623 B = 0.002628 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.378716 B =10649.968599 C =11056.264780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 C -0.135 4.135 4 C 0.521 3.479 5 O -0.567 6.567 6 N -0.575 5.575 7 N -0.305 5.305 8 C 0.154 3.846 9 C -0.152 4.152 10 C -0.018 4.018 11 C -0.245 4.245 12 C 0.134 3.866 13 O -0.225 6.225 14 C -0.415 4.415 15 H 0.112 0.888 16 C -0.024 4.024 17 N -0.919 5.919 18 Si 1.022 2.978 19 H -0.254 1.254 20 H -0.276 1.276 21 H -0.254 1.254 22 C -0.215 4.215 23 C -0.032 4.032 24 H 0.096 0.904 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.131 0.869 28 H 0.046 0.954 29 H 0.095 0.905 30 H 0.044 0.956 31 H 0.403 0.597 32 H 0.160 0.840 33 H 0.169 0.831 34 H 0.135 0.865 35 H 0.274 0.726 36 H 0.109 0.891 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.813 7.661 -22.624 26.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 C -0.193 4.193 4 C 0.311 3.689 5 O -0.443 6.443 6 N -0.318 5.318 7 N -0.110 5.110 8 C -0.054 4.054 9 C -0.155 4.155 10 C -0.038 4.038 11 C -0.264 4.264 12 C 0.081 3.919 13 O -0.130 6.130 14 C -0.491 4.491 15 H 0.130 0.870 16 C -0.222 4.222 17 N -0.557 5.557 18 Si 0.841 3.159 19 H -0.179 1.179 20 H -0.201 1.201 21 H -0.178 1.178 22 C -0.235 4.235 23 C -0.052 4.052 24 H 0.115 0.885 25 H 0.092 0.908 26 H 0.066 0.934 27 H 0.148 0.852 28 H 0.066 0.934 29 H 0.114 0.886 30 H 0.063 0.937 31 H 0.244 0.756 32 H 0.177 0.823 33 H 0.187 0.813 34 H 0.153 0.847 35 H 0.083 0.917 36 H 0.127 0.873 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.642 9.018 -21.475 25.608 hybrid contribution -0.244 -1.356 0.267 1.403 sum -10.886 7.662 -21.208 25.040 Atomic orbital electron populations 1.21849 0.90781 1.03684 1.03731 1.21415 0.99047 0.97365 0.94237 1.21667 1.01023 0.93679 1.02890 1.21745 0.79012 0.79750 0.88438 1.90704 1.38611 1.66329 1.48638 1.46886 1.51736 1.12332 1.20878 1.75001 1.19123 1.11468 1.05448 1.24454 0.95069 0.90399 0.95515 1.18222 1.06383 0.94616 0.96275 1.21225 0.95379 0.92074 0.95119 1.21244 1.05361 1.02048 0.97774 1.20076 0.92269 0.92741 0.86767 1.83929 1.68946 1.24331 1.35750 1.21926 1.33057 0.81363 1.12722 0.87044 1.26699 0.95265 1.05940 0.94270 1.70198 1.32818 1.39207 1.13429 0.84595 0.79423 0.73218 0.78681 1.17853 1.20085 1.17784 1.20302 1.08549 0.93192 1.01422 1.21022 0.93783 0.98948 0.91466 0.88541 0.90762 0.93432 0.85164 0.93442 0.88628 0.93662 0.75626 0.82288 0.81339 0.84746 0.91745 0.87287 0.85643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.09 71.98 0.65 -0.50 16 2 C -0.10 -1.26 3.26 -11.54 -0.04 -1.30 16 3 C -0.13 -1.95 8.48 71.98 0.61 -1.34 16 4 C 0.52 12.63 7.27 87.66 0.64 13.27 16 5 O -0.57 -20.39 16.32 -3.15 -0.05 -20.44 16 6 N -0.57 -12.31 6.16 -173.51 -1.07 -13.38 16 7 N -0.31 -8.84 10.15 -52.22 -0.53 -9.37 16 8 C 0.15 3.69 10.75 87.39 0.94 4.63 16 9 C -0.15 -4.74 5.87 -20.11 -0.12 -4.86 16 10 C -0.02 -0.53 9.78 22.53 0.22 -0.31 16 11 C -0.25 -9.74 9.15 22.35 0.20 -9.53 16 12 C 0.13 6.54 6.65 22.67 0.15 6.69 16 13 O -0.22 -13.27 9.75 -21.46 -0.21 -13.48 16 14 C -0.42 -23.24 9.48 67.92 0.64 -22.60 16 15 H 0.11 5.52 5.19 -2.91 -0.02 5.51 16 16 C -0.02 -1.31 5.49 84.83 0.47 -0.84 16 17 N -0.92 -55.75 13.67 21.61 0.30 -55.45 16 18 Si 1.02 41.16 29.55 68.60 2.03 43.19 16 19 H -0.25 -9.51 7.11 99.48 0.71 -8.81 16 20 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 21 H -0.25 -9.46 7.11 99.48 0.71 -8.76 16 22 C -0.22 -9.60 9.97 22.35 0.22 -9.38 16 23 C -0.03 -1.21 9.57 22.53 0.22 -1.00 16 24 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 25 H 0.07 0.38 7.56 -2.39 -0.02 0.37 16 26 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.13 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.05 0.84 8.10 -2.38 -0.02 0.82 16 29 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.04 0.82 8.10 -2.39 -0.02 0.80 16 31 H 0.40 4.72 8.07 -213.32 -1.72 3.00 16 32 H 0.16 2.12 8.02 -2.91 -0.02 2.09 16 33 H 0.17 3.23 8.06 -2.91 -0.02 3.21 16 34 H 0.13 5.21 5.62 -2.91 -0.02 5.20 16 35 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 36 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 37 H 0.13 4.73 7.55 -2.91 -0.02 4.71 16 Total: -1.00 -80.79 326.93 4.64 -76.15 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -0.63 Total: 19.86 kcal Atomic # 6 Polarization: -31.88 SS G_CDS: 4.81 Total: -27.07 kcal Atomic # 7 Polarization: -76.90 SS G_CDS: -1.30 Total: -78.21 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -0.26 Total: -33.92 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -80.79 4.64 -76.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744739161.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.933 kcal (2) G-P(sol) polarization free energy of solvation -80.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds