Wall clock time and date at job start Mon Mar 30 2020 20:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47633 * 2 1 4 4 N 1.46501 * 109.47423 * 179.97438 * 3 2 1 5 5 C 1.34779 * 120.00024 * 179.97438 * 4 3 2 6 6 O 1.21586 * 119.99860 * 0.02562 * 5 4 3 7 7 C 1.47509 * 119.99722 * 180.02562 * 5 4 3 8 8 C 1.39646 * 120.20597 * 5.18427 * 7 5 4 9 9 C 1.37850 * 119.93550 * 180.27398 * 8 7 5 10 10 C 1.38601 * 120.34675 * 359.72282 * 9 8 7 11 11 C 1.37974 * 120.41840 * 359.97438 * 10 9 8 12 12 C 1.38997 * 120.05934 * 0.02562 * 11 10 9 13 13 N 1.38923 * 120.17728 * 179.97438 * 12 11 10 14 14 C 1.34773 * 119.99949 * 324.62331 * 13 12 11 15 15 O 1.21730 * 119.99931 * 4.45822 * 14 13 12 16 16 C 1.46178 * 120.00110 * 184.45288 * 14 13 12 17 17 H 1.08006 * 119.99900 * 354.96508 * 16 14 13 18 18 C 1.40124 * 120.00366 * 174.68057 * 16 14 13 19 19 N 1.30639 * 119.99630 * 5.04440 * 18 16 14 20 20 Si 1.86797 * 120.00551 * 185.04722 * 18 16 14 21 21 H 1.48497 * 109.47122 * 94.99945 * 20 18 16 22 22 H 1.48502 * 109.47267 * 215.00346 * 20 18 16 23 23 H 1.48501 * 109.46651 * 335.00143 * 20 18 16 24 24 H 1.09004 * 109.46631 * 59.99891 * 1 2 3 25 25 H 1.08999 * 109.47682 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47020 * 300.00375 * 1 2 3 27 27 H 1.09002 * 109.47020 * 239.99625 * 2 1 3 28 28 H 1.09004 * 109.46631 * 120.00109 * 2 1 3 29 29 H 1.09002 * 109.47224 * 59.99750 * 3 2 1 30 30 H 1.08995 * 109.47228 * 300.00034 * 3 2 1 31 31 H 0.96999 * 119.99377 * 0.02562 * 4 3 2 32 32 H 1.07999 * 120.03679 * 0.02562 * 8 7 5 33 33 H 1.07991 * 119.82545 * 179.74713 * 9 8 7 34 34 H 1.08000 * 119.78936 * 180.02562 * 10 9 8 35 35 H 1.08000 * 119.97394 * 180.02562 * 11 10 9 36 36 H 0.97002 * 119.99644 * 144.62733 * 13 12 11 37 37 H 0.96999 * 119.99893 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4423 0.0006 5 6 4.1791 2.6095 0.0002 6 8 3.5712 3.6625 -0.0002 7 6 5.6542 2.6094 0.0003 8 6 6.3566 1.4074 -0.1083 9 6 7.7351 1.4132 -0.1020 10 6 8.4298 2.6077 0.0059 11 6 7.7504 3.8042 0.1077 12 6 6.3605 3.8183 0.1031 13 7 5.6740 5.0216 0.2060 14 6 6.1654 6.0143 0.9737 15 8 7.2500 5.8876 1.5118 16 6 5.3962 7.2433 1.1600 17 1 4.4731 7.3899 0.6188 18 6 5.8534 8.2286 2.0453 19 7 7.0143 8.0942 2.6292 20 14 4.8029 9.7341 2.3908 21 1 3.9995 9.5059 3.6186 22 1 5.6806 10.9159 2.5859 23 1 3.8935 9.9771 1.2422 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6769 1.9562 -0.8899 31 1 3.9900 0.6022 0.0006 32 1 5.8205 0.4737 -0.1931 33 1 8.2765 0.4822 -0.1820 34 1 9.5098 2.6018 0.0095 35 1 8.2990 4.7308 0.1911 36 1 4.8408 5.1472 -0.2747 37 1 7.3309 8.7764 3.2417 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771993929.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:02 Heat of formation + Delta-G solvation = -55.505564 kcal Electronic energy + Delta-G solvation = -20857.152845 eV Core-core repulsion = 17599.013169 eV Total energy + Delta-G solvation = -3258.139676 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.08674 -38.34788 -36.85709 -35.74592 -33.46310 -32.69316 -32.38030 -30.54570 -29.04885 -26.53075 -26.00391 -23.18893 -22.30805 -21.68973 -20.22533 -19.74743 -17.46260 -17.32483 -16.18611 -15.93632 -15.80077 -15.43324 -14.77523 -14.42874 -14.30869 -13.79854 -13.76370 -13.35627 -12.92084 -12.70991 -12.49197 -12.32910 -12.21471 -11.80453 -11.57840 -11.36195 -11.25974 -11.09283 -11.06071 -10.92450 -10.54622 -10.28765 -9.61861 -9.20846 -8.99031 -8.84242 -8.50430 -7.68895 -7.11581 -6.30933 -4.74656 1.36189 1.96921 3.11830 3.18838 3.23396 3.28946 3.34698 4.04907 4.26682 4.56190 4.64543 4.70566 4.76123 4.97592 5.11222 5.17833 5.42938 5.43843 5.46535 5.56743 5.66722 5.76903 5.82359 5.92698 5.99514 6.01976 6.17806 6.40079 6.53935 6.66785 6.96252 7.01945 7.31586 7.36964 7.65162 7.86887 8.10731 8.25525 8.53207 8.90762 9.30517 10.42221 10.60700 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.015095 B = 0.005243 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.433968 B = 5338.996119 C = 7037.909086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.136 4.136 3 C 0.119 3.881 4 N -0.735 5.735 5 C 0.566 3.434 6 O -0.535 6.535 7 C -0.212 4.212 8 C -0.067 4.067 9 C -0.179 4.179 10 C -0.075 4.075 11 C -0.141 4.141 12 C 0.256 3.744 13 N -0.680 5.680 14 C 0.540 3.460 15 O -0.563 6.563 16 C -0.531 4.531 17 H 0.074 0.926 18 C 0.086 3.914 19 N -0.760 5.760 20 Si 0.913 3.087 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.262 1.262 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.397 0.603 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.149 0.851 36 H 0.409 0.591 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.462 -15.544 -5.826 17.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.173 4.173 3 C -0.004 4.004 4 N -0.389 5.389 5 C 0.356 3.644 6 O -0.412 6.412 7 C -0.219 4.219 8 C -0.086 4.086 9 C -0.198 4.198 10 C -0.094 4.094 11 C -0.162 4.162 12 C 0.151 3.849 13 N -0.325 5.325 14 C 0.348 3.652 15 O -0.446 6.446 16 C -0.566 4.566 17 H 0.092 0.908 18 C -0.135 4.135 19 N -0.388 5.388 20 Si 0.738 3.262 21 H -0.196 1.196 22 H -0.203 1.203 23 H -0.186 1.186 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.232 0.768 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.167 0.833 36 H 0.249 0.751 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.099 -14.629 -5.276 16.704 hybrid contribution -0.681 0.212 0.082 0.718 sum -6.780 -14.417 -5.194 16.757 Atomic orbital electron populations 1.21677 0.94660 1.01943 1.02428 1.21735 0.96902 0.96122 1.02586 1.21350 0.79823 0.96748 1.02524 1.45854 1.06958 1.08632 1.77407 1.18234 0.87219 0.83386 0.75540 1.90661 1.69933 1.30796 1.49845 1.19585 0.91929 0.93588 1.16819 1.20838 0.94423 0.95441 0.97934 1.20768 0.93762 0.97872 1.07436 1.21182 0.99658 0.92215 0.96363 1.21570 0.92924 0.99806 1.01937 1.17991 0.91427 0.85902 0.89547 1.44438 1.27104 1.11878 1.49057 1.18440 0.86289 0.82735 0.77751 1.90597 1.22182 1.80712 1.51120 1.20894 1.08796 1.00373 1.26564 0.90801 1.25751 0.94580 0.98909 0.94233 1.69996 1.16302 1.32035 1.20483 0.86254 0.80152 0.80309 0.79530 1.19647 1.20283 1.18640 0.92344 0.92343 0.92292 0.91414 0.91364 0.91504 0.91569 0.76796 0.86724 0.86526 0.86218 0.83313 0.75065 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.14 -1.06 6.05 -26.73 -0.16 -1.22 16 3 C 0.12 1.36 5.67 -4.05 -0.02 1.34 16 4 N -0.74 -9.55 5.51 -61.36 -0.34 -9.89 16 5 C 0.57 10.17 7.75 -12.48 -0.10 10.07 16 6 O -0.53 -11.49 13.91 5.29 0.07 -11.42 16 7 C -0.21 -3.91 5.89 -104.78 -0.62 -4.53 16 8 C -0.07 -0.97 9.52 -39.20 -0.37 -1.35 16 9 C -0.18 -2.56 10.03 -39.59 -0.40 -2.96 16 10 C -0.07 -1.25 10.03 -39.54 -0.40 -1.65 16 11 C -0.14 -3.00 8.67 -39.40 -0.34 -3.34 16 12 C 0.26 5.69 6.30 -83.56 -0.53 5.16 16 13 N -0.68 -17.01 4.65 -11.02 -0.05 -17.06 16 14 C 0.54 15.79 7.57 -13.07 -0.10 15.69 16 15 O -0.56 -17.82 12.48 5.16 0.06 -17.76 16 16 C -0.53 -15.38 9.53 -35.69 -0.34 -15.72 16 17 H 0.07 2.01 7.85 -52.48 -0.41 1.60 16 18 C 0.09 2.41 5.50 -17.35 -0.10 2.32 16 19 N -0.76 -22.52 11.84 55.55 0.66 -21.86 16 20 Si 0.91 20.36 29.56 -169.99 -5.03 15.33 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.40 3.97 6.53 -40.82 -0.27 3.70 16 32 H 0.11 1.19 6.44 -52.49 -0.34 0.86 16 33 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.15 3.57 6.24 -52.49 -0.33 3.25 16 36 H 0.41 9.88 6.33 -40.82 -0.26 9.62 16 37 H 0.27 7.25 8.29 -40.82 -0.34 6.91 16 LS Contribution 316.48 15.07 4.77 4.77 Total: -1.00 -34.77 316.48 -7.49 -42.26 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -4.54 Total: 12.48 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -3.10 Total: 3.15 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: 0.27 Total: -48.81 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: 0.14 Total: -29.17 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.03 Total: 15.33 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.77 -7.49 -42.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771993929.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.248 kcal (2) G-P(sol) polarization free energy of solvation -34.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds