Wall clock time and date at job start Mon Mar 30 2020 20:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47633 * 2 1 4 4 N 1.46501 * 109.47423 * 179.97438 * 3 2 1 5 5 C 1.34779 * 120.00024 * 179.97438 * 4 3 2 6 6 O 1.21586 * 119.99860 * 0.02562 * 5 4 3 7 7 C 1.47509 * 119.99722 * 180.02562 * 5 4 3 8 8 C 1.39646 * 120.20597 * 5.18427 * 7 5 4 9 9 C 1.37850 * 119.93550 * 180.27398 * 8 7 5 10 10 C 1.38601 * 120.34675 * 359.72282 * 9 8 7 11 11 C 1.37974 * 120.41840 * 359.97438 * 10 9 8 12 12 C 1.38997 * 120.05934 * 0.02562 * 11 10 9 13 13 N 1.38923 * 120.17728 * 179.97438 * 12 11 10 14 14 C 1.34773 * 119.99949 * 324.62331 * 13 12 11 15 15 O 1.21730 * 119.99931 * 4.45822 * 14 13 12 16 16 C 1.46178 * 120.00110 * 184.45288 * 14 13 12 17 17 H 1.08006 * 119.99900 * 354.96508 * 16 14 13 18 18 C 1.40124 * 120.00366 * 174.68057 * 16 14 13 19 19 N 1.30639 * 119.99630 * 5.04440 * 18 16 14 20 20 Si 1.86797 * 120.00551 * 185.04722 * 18 16 14 21 21 H 1.48497 * 109.47122 * 94.99945 * 20 18 16 22 22 H 1.48502 * 109.47267 * 215.00346 * 20 18 16 23 23 H 1.48501 * 109.46651 * 335.00143 * 20 18 16 24 24 H 1.09004 * 109.46631 * 59.99891 * 1 2 3 25 25 H 1.08999 * 109.47682 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47020 * 300.00375 * 1 2 3 27 27 H 1.09002 * 109.47020 * 239.99625 * 2 1 3 28 28 H 1.09004 * 109.46631 * 120.00109 * 2 1 3 29 29 H 1.09002 * 109.47224 * 59.99750 * 3 2 1 30 30 H 1.08995 * 109.47228 * 300.00034 * 3 2 1 31 31 H 0.96999 * 119.99377 * 0.02562 * 4 3 2 32 32 H 1.07999 * 120.03679 * 0.02562 * 8 7 5 33 33 H 1.07991 * 119.82545 * 179.74713 * 9 8 7 34 34 H 1.08000 * 119.78936 * 180.02562 * 10 9 8 35 35 H 1.08000 * 119.97394 * 180.02562 * 11 10 9 36 36 H 0.97002 * 119.99644 * 144.62733 * 13 12 11 37 37 H 0.96999 * 119.99893 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4423 0.0006 5 6 4.1791 2.6095 0.0002 6 8 3.5712 3.6625 -0.0002 7 6 5.6542 2.6094 0.0003 8 6 6.3566 1.4074 -0.1083 9 6 7.7351 1.4132 -0.1020 10 6 8.4298 2.6077 0.0059 11 6 7.7504 3.8042 0.1077 12 6 6.3605 3.8183 0.1031 13 7 5.6740 5.0216 0.2060 14 6 6.1654 6.0143 0.9737 15 8 7.2500 5.8876 1.5118 16 6 5.3962 7.2433 1.1600 17 1 4.4731 7.3899 0.6188 18 6 5.8534 8.2286 2.0453 19 7 7.0143 8.0942 2.6292 20 14 4.8029 9.7341 2.3908 21 1 3.9995 9.5059 3.6186 22 1 5.6806 10.9159 2.5859 23 1 3.8935 9.9771 1.2422 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6769 1.9562 -0.8899 31 1 3.9900 0.6022 0.0006 32 1 5.8205 0.4737 -0.1931 33 1 8.2765 0.4822 -0.1820 34 1 9.5098 2.6018 0.0095 35 1 8.2990 4.7308 0.1911 36 1 4.8408 5.1472 -0.2747 37 1 7.3309 8.7764 3.2417 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771993929.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:02 Heat of formation + Delta-G solvation = -81.204015 kcal Electronic energy + Delta-G solvation = -20858.267214 eV Core-core repulsion = 17599.013169 eV Total energy + Delta-G solvation = -3259.254044 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.56599 -39.95260 -38.59335 -36.84860 -35.29743 -34.52226 -33.76155 -31.83151 -30.69597 -28.33323 -27.22493 -24.49468 -23.87441 -22.60601 -21.61279 -21.51823 -19.37108 -18.72034 -17.77384 -17.61423 -17.13684 -16.74494 -16.14014 -15.98445 -15.73270 -15.29277 -15.23255 -14.73650 -14.50304 -14.18444 -13.76076 -13.59507 -13.29358 -13.22141 -13.01564 -12.86007 -12.81380 -12.71828 -12.33636 -12.05405 -12.00647 -11.73390 -11.21955 -10.98433 -10.70903 -10.23610 -9.99167 -9.73287 -8.83307 -8.41951 -6.98788 -0.05148 0.54531 1.34673 1.36337 1.52720 1.90139 2.17064 2.18596 2.33502 2.91494 2.98890 3.51088 3.79577 3.90087 4.01364 4.09533 4.22019 4.35920 4.52202 4.58506 4.67777 4.68866 4.78109 4.90317 5.02272 5.15773 5.20254 5.26354 5.30565 5.35211 5.41757 5.52572 5.62208 5.77505 5.92023 6.11432 6.35283 6.54859 6.72806 7.18724 7.32490 8.28746 8.51573 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.015095 B = 0.005243 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.433968 B = 5338.996119 C = 7037.909086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.115 3.885 4 N -0.710 5.710 5 C 0.558 3.442 6 O -0.580 6.580 7 C -0.214 4.214 8 C -0.051 4.051 9 C -0.155 4.155 10 C -0.069 4.069 11 C -0.174 4.174 12 C 0.204 3.796 13 N -0.684 5.684 14 C 0.528 3.472 15 O -0.603 6.603 16 C -0.568 4.568 17 H 0.080 0.920 18 C 0.032 3.968 19 N -0.809 5.809 20 Si 1.002 2.998 21 H -0.262 1.262 22 H -0.262 1.262 23 H -0.252 1.252 24 H 0.056 0.944 25 H 0.075 0.925 26 H 0.051 0.949 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.416 0.584 32 H 0.170 0.830 33 H 0.172 0.828 34 H 0.147 0.853 35 H 0.104 0.896 36 H 0.408 0.592 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.372 -18.851 -6.242 21.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.008 4.008 4 N -0.363 5.363 5 C 0.348 3.652 6 O -0.461 6.461 7 C -0.221 4.221 8 C -0.070 4.070 9 C -0.173 4.173 10 C -0.088 4.088 11 C -0.195 4.195 12 C 0.103 3.897 13 N -0.330 5.330 14 C 0.335 3.665 15 O -0.489 6.489 16 C -0.603 4.603 17 H 0.098 0.902 18 C -0.184 4.184 19 N -0.438 5.438 20 Si 0.820 3.180 21 H -0.187 1.187 22 H -0.187 1.187 23 H -0.175 1.175 24 H 0.075 0.925 25 H 0.094 0.906 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.254 0.746 32 H 0.187 0.813 33 H 0.189 0.811 34 H 0.165 0.835 35 H 0.122 0.878 36 H 0.248 0.752 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.007 -18.057 -5.728 20.198 hybrid contribution -0.351 0.970 0.135 1.040 sum -7.357 -17.086 -5.593 19.426 Atomic orbital electron populations 1.21698 0.94121 1.02931 1.02080 1.21690 0.97228 0.93263 1.03988 1.21510 0.78602 0.99387 1.01300 1.45675 1.07700 1.07834 1.75074 1.18362 0.87268 0.84096 0.75489 1.90636 1.70628 1.32781 1.52102 1.19830 0.92519 0.93668 1.16069 1.21449 0.94928 0.95685 0.94894 1.21378 0.93817 0.98625 1.03506 1.21532 1.01178 0.91435 0.94661 1.21347 0.92862 1.00173 1.05153 1.18381 0.92106 0.86154 0.93099 1.43990 1.27134 1.12646 1.49192 1.18722 0.85935 0.83898 0.77956 1.90543 1.23535 1.81887 1.52917 1.21370 1.09401 1.01559 1.27973 0.90195 1.26985 0.95897 1.02446 0.93105 1.70126 1.18507 1.33844 1.21291 0.84953 0.78065 0.75282 0.79685 1.18653 1.18658 1.17547 0.92522 0.90630 0.92967 0.89617 0.90227 0.93349 0.92399 0.74584 0.81262 0.81091 0.83520 0.87837 0.75207 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 71.98 0.71 -1.03 16 2 C -0.12 -1.53 6.05 30.59 0.19 -1.35 16 3 C 0.12 2.46 5.67 86.38 0.49 2.95 16 4 N -0.71 -16.75 5.51 -466.31 -2.57 -19.32 16 5 C 0.56 19.88 7.75 86.69 0.67 20.56 16 6 O -0.58 -25.99 13.91 -3.99 -0.06 -26.04 16 7 C -0.21 -7.75 5.89 -19.97 -0.12 -7.87 16 8 C -0.05 -1.25 9.52 22.52 0.21 -1.04 16 9 C -0.15 -3.66 10.03 22.26 0.22 -3.43 16 10 C -0.07 -2.20 10.03 22.29 0.22 -1.98 16 11 C -0.17 -7.79 8.67 22.39 0.19 -7.60 16 12 C 0.20 9.52 6.30 38.72 0.24 9.76 16 13 N -0.68 -36.94 4.65 -306.98 -1.43 -38.37 16 14 C 0.53 33.29 7.57 86.30 0.65 33.94 16 15 O -0.60 -41.26 12.48 -4.44 -0.06 -41.32 16 16 C -0.57 -34.90 9.53 24.79 0.24 -34.66 16 17 H 0.08 4.61 7.85 -2.91 -0.02 4.59 16 18 C 0.03 1.87 5.50 85.33 0.47 2.34 16 19 N -0.81 -50.32 11.84 21.85 0.26 -50.06 16 20 Si 1.00 42.90 29.56 68.60 2.03 44.93 16 21 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 22 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 23 H -0.25 -10.25 7.11 99.48 0.71 -9.55 16 24 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 25 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.42 6.40 6.53 -92.71 -0.61 5.79 16 32 H 0.17 2.31 6.44 -2.91 -0.02 2.29 16 33 H 0.17 2.38 8.06 -2.92 -0.02 2.36 16 34 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 35 H 0.10 5.51 6.24 -2.91 -0.02 5.50 16 36 H 0.41 21.39 6.33 -92.71 -0.59 20.80 16 37 H 0.28 15.57 8.29 -92.71 -0.77 14.80 16 Total: -1.00 -85.48 316.48 2.50 -82.98 By element: Atomic # 1 Polarization: 36.69 SS G_CDS: -0.08 Total: 36.61 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 4.40 Total: 10.59 kcal Atomic # 7 Polarization: -104.01 SS G_CDS: -3.74 Total: -107.74 kcal Atomic # 8 Polarization: -67.25 SS G_CDS: -0.11 Total: -67.36 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -85.48 2.50 -82.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771993929.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.775 kcal (2) G-P(sol) polarization free energy of solvation -85.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds