Wall clock time and date at job start Mon Mar 30 2020 20:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46836 * 2 1 4 4 C 1.52999 * 109.46936 * 240.00203 * 2 1 3 5 5 C 1.50698 * 109.47119 * 59.99864 * 4 2 1 6 6 H 1.07997 * 120.00005 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99734 * 179.97438 * 5 4 2 8 8 N 1.31508 * 120.00389 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99892 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46950 * 89.99985 * 9 7 5 11 11 H 1.48491 * 109.47176 * 210.00191 * 9 7 5 12 12 H 1.48496 * 109.46879 * 330.00334 * 9 7 5 13 13 C 1.53002 * 109.47423 * 120.00125 * 2 1 3 14 14 O 1.45202 * 109.46657 * 300.00029 * 13 2 1 15 15 C 1.34863 * 116.99419 * 179.97438 * 14 13 2 16 16 O 1.21566 * 120.00150 * 359.97438 * 15 14 13 17 17 C 1.46888 * 119.99721 * 180.02562 * 15 14 13 18 18 C 1.38077 * 125.93286 * 179.97438 * 17 15 14 19 19 C 1.39320 * 107.48002 * 179.76999 * 18 17 15 20 20 C 1.38104 * 107.52688 * 0.42136 * 19 18 17 21 21 C 1.43205 * 125.88279 * 179.84114 * 20 19 18 22 22 N 8.34770 * 72.97590 * 64.35972 * 2 1 3 23 23 N 1.36672 * 108.23115 * 359.57489 * 20 19 18 24 24 H 0.96999 * 125.69137 * 180.26381 * 23 20 19 25 25 H 1.09000 * 109.46750 * 299.99613 * 1 2 3 26 26 H 1.08993 * 109.46900 * 59.99710 * 1 2 3 27 27 H 1.08999 * 109.46361 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46723 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47156 * 300.00131 * 3 2 1 30 30 H 1.09000 * 109.46677 * 60.00349 * 3 2 1 31 31 H 1.08999 * 109.46789 * 179.97438 * 4 2 1 32 32 H 1.08992 * 109.47328 * 299.99768 * 4 2 1 33 33 H 0.97004 * 120.00625 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.47287 * 180.02562 * 13 2 1 35 35 H 1.09000 * 109.46847 * 59.99861 * 13 2 1 36 36 H 1.08003 * 126.26235 * 0.06989 * 18 17 15 37 37 H 1.07999 * 126.24152 * 180.25823 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9164 0.8670 -2.3805 7 6 1.8711 -0.4815 -3.7320 8 7 2.6272 -1.5508 -3.8527 9 14 1.2478 0.3986 -5.2572 10 1 2.2252 1.4411 -5.6613 11 1 1.0836 -0.5805 -6.3614 12 1 -0.0607 1.0352 -4.9613 13 6 2.0401 -0.7213 1.2492 14 8 1.5561 -0.0367 2.4348 15 6 1.9181 -0.5496 3.6284 16 8 2.6187 -1.5419 3.6764 17 6 1.4649 0.0903 4.8705 18 6 1.7602 -0.3290 6.1525 19 6 1.1417 0.5544 7.0346 20 6 0.4699 1.4948 6.2786 21 6 -0.3030 2.5865 6.7902 22 7 -0.9139 3.4539 7.1959 23 7 0.6745 1.2075 4.9582 24 1 0.3199 1.7100 4.2082 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 3.1301 1.4426 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 -0.7208 -1.2495 32 1 1.6767 -1.7488 -1.2493 33 1 2.8616 -1.8822 -4.7337 34 1 3.1301 -0.7209 1.2494 35 1 1.6768 -1.7489 1.2492 36 1 2.3644 -1.1826 6.4221 37 1 1.1786 0.5102 8.1130 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798878739.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:11 Heat of formation + Delta-G solvation = -29.874272 kcal Electronic energy + Delta-G solvation = -20402.052730 eV Core-core repulsion = 17145.024510 eV Total energy + Delta-G solvation = -3257.028220 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.81113 -39.98356 -37.31219 -36.86199 -35.54068 -32.41509 -31.73939 -30.50731 -27.43741 -26.64167 -26.52203 -24.55855 -22.97759 -21.78166 -20.83466 -19.77492 -18.34271 -17.85334 -16.52413 -16.41566 -16.09911 -15.19356 -15.03884 -14.60356 -14.11370 -13.87265 -13.87219 -13.53795 -13.26445 -13.23649 -13.18356 -12.67060 -12.49020 -12.45379 -12.12068 -11.38087 -11.04228 -10.91640 -10.82574 -10.69601 -10.43950 -10.43520 -10.28664 -9.84702 -9.62577 -9.31605 -9.02364 -8.81712 -8.42259 -6.06418 -4.07987 0.50415 1.69625 1.78420 2.54368 2.75371 2.88447 2.99363 3.27551 3.34775 3.36723 3.55173 4.39488 4.59704 4.68279 4.86134 5.29029 5.35804 5.39908 5.40352 5.59989 5.70148 5.88588 6.06440 6.07656 6.24274 6.25209 6.37551 6.44558 6.60369 6.63965 6.67465 6.95670 7.00465 7.01420 7.03792 7.53591 7.64761 7.69296 7.91552 8.32663 8.96207 9.55548 11.05134 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.030695 B = 0.003362 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.967202 B = 8327.218306 C = 9042.814689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.059 4.059 3 C -0.126 4.126 4 C 0.035 3.965 5 C -0.512 4.512 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.081 3.919 14 O -0.354 6.354 15 C 0.526 3.474 16 O -0.490 6.490 17 C 0.019 3.981 18 C -0.110 4.110 19 C -0.127 4.127 20 C 0.094 3.906 21 C 0.276 3.724 22 N -0.394 5.394 23 N -0.500 5.500 24 H 0.433 0.567 25 H 0.036 0.964 26 H 0.066 0.934 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.066 0.934 30 H 0.036 0.964 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.261 0.739 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.165 0.835 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.627 3.710 18.838 19.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.059 4.059 3 C -0.183 4.183 4 C -0.002 4.002 5 C -0.550 4.550 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.009 3.991 14 O -0.270 6.270 15 C 0.369 3.631 16 O -0.377 6.377 17 C -0.098 4.098 18 C -0.135 4.135 19 C -0.155 4.155 20 C -0.024 4.024 21 C -0.040 4.040 22 N -0.070 5.070 23 N -0.097 5.097 24 H 0.273 0.727 25 H 0.055 0.945 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.182 0.818 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.329 4.700 19.095 19.945 hybrid contribution -0.111 0.173 -1.573 1.587 sum -3.441 4.873 17.522 18.509 Atomic orbital electron populations 1.21721 0.94805 1.01054 1.00734 1.20849 0.96146 0.96230 0.92704 1.21722 1.00182 0.95683 1.00732 1.19127 0.96456 0.95331 0.89292 1.21130 1.31373 1.12197 0.90280 0.92106 1.25007 0.95250 0.95048 0.99131 1.69954 1.36875 1.22956 1.23587 0.86619 0.79237 0.79410 0.82896 1.20705 1.21278 1.19880 1.23614 0.99220 0.96053 0.80234 1.86542 1.69657 1.56021 1.14800 1.19799 0.78000 0.82020 0.83231 1.90919 1.34973 1.24275 1.87569 1.19713 1.03874 0.92596 0.93573 1.21311 1.02236 1.01216 0.88747 1.21251 0.99901 0.94421 0.99938 1.15630 1.06141 0.96891 0.83782 1.24276 0.92889 0.91916 0.94954 1.81341 1.09551 1.09681 1.06473 1.41945 1.38144 1.22657 1.06909 0.72698 0.94497 0.91456 0.93601 0.93597 0.91470 0.94486 0.96244 0.96232 0.92941 0.91153 0.91147 0.81787 0.82121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.08 37.16 0.30 -1.91 16 2 C -0.06 -1.11 0.61 -154.50 -0.09 -1.20 16 3 C -0.13 -2.21 8.08 37.16 0.30 -1.91 16 4 C 0.03 0.83 4.04 -27.88 -0.11 0.72 16 5 C -0.51 -13.32 7.65 -34.44 -0.26 -13.59 16 6 H 0.06 1.53 5.68 -52.49 -0.30 1.23 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 9 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 13 C 0.08 1.37 4.33 37.16 0.16 1.53 16 14 O -0.35 -5.07 8.89 -40.94 -0.36 -5.44 16 15 C 0.53 7.08 7.94 34.23 0.27 7.35 16 16 O -0.49 -7.87 16.67 -19.31 -0.32 -8.19 16 17 C 0.02 0.19 7.07 -82.05 -0.58 -0.39 16 18 C -0.11 -0.90 10.60 -39.24 -0.42 -1.32 16 19 C -0.13 -0.84 10.80 -39.23 -0.42 -1.26 16 20 C 0.09 0.72 6.93 -83.83 -0.58 0.14 16 21 C 0.28 2.42 15.89 -22.47 -0.36 2.06 16 22 N -0.39 -4.31 18.54 41.83 0.78 -3.53 16 23 N -0.50 -4.10 6.13 -6.98 -0.04 -4.14 16 24 H 0.43 2.99 8.96 -40.82 -0.37 2.62 16 25 H 0.04 0.55 7.68 -51.93 -0.40 0.16 16 26 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 30 H 0.04 0.55 7.68 -51.93 -0.40 0.16 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.16 1.16 8.06 -52.48 -0.42 0.74 16 37 H 0.16 0.64 8.06 -52.49 -0.42 0.21 16 LS Contribution 328.35 15.07 4.95 4.95 Total: -1.00 -30.21 328.35 -5.85 -36.06 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -4.67 Total: -2.06 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -1.89 Total: -8.32 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: 1.47 Total: -32.84 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -0.69 Total: -13.62 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.21 -5.85 -36.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798878739.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.185 kcal (2) G-P(sol) polarization free energy of solvation -30.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds