Wall clock time and date at job start Mon Mar 30 2020 20:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46836 * 2 1 4 4 C 1.52999 * 109.46936 * 240.00203 * 2 1 3 5 5 C 1.50698 * 109.47119 * 59.99864 * 4 2 1 6 6 H 1.07997 * 120.00005 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99734 * 179.97438 * 5 4 2 8 8 N 1.31508 * 120.00389 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99892 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46950 * 89.99985 * 9 7 5 11 11 H 1.48491 * 109.47176 * 210.00191 * 9 7 5 12 12 H 1.48496 * 109.46879 * 330.00334 * 9 7 5 13 13 C 1.53002 * 109.47423 * 120.00125 * 2 1 3 14 14 O 1.45202 * 109.46657 * 300.00029 * 13 2 1 15 15 C 1.34863 * 116.99419 * 179.97438 * 14 13 2 16 16 O 1.21566 * 120.00150 * 359.97438 * 15 14 13 17 17 C 1.46888 * 119.99721 * 180.02562 * 15 14 13 18 18 C 1.38077 * 125.93286 * 179.97438 * 17 15 14 19 19 C 1.39320 * 107.48002 * 179.76999 * 18 17 15 20 20 C 1.38104 * 107.52688 * 0.42136 * 19 18 17 21 21 C 1.43205 * 125.88279 * 179.84114 * 20 19 18 22 22 N 8.34770 * 72.97590 * 64.35972 * 2 1 3 23 23 N 1.36672 * 108.23115 * 359.57489 * 20 19 18 24 24 H 0.96999 * 125.69137 * 180.26381 * 23 20 19 25 25 H 1.09000 * 109.46750 * 299.99613 * 1 2 3 26 26 H 1.08993 * 109.46900 * 59.99710 * 1 2 3 27 27 H 1.08999 * 109.46361 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46723 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47156 * 300.00131 * 3 2 1 30 30 H 1.09000 * 109.46677 * 60.00349 * 3 2 1 31 31 H 1.08999 * 109.46789 * 179.97438 * 4 2 1 32 32 H 1.08992 * 109.47328 * 299.99768 * 4 2 1 33 33 H 0.97004 * 120.00625 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.47287 * 180.02562 * 13 2 1 35 35 H 1.09000 * 109.46847 * 59.99861 * 13 2 1 36 36 H 1.08003 * 126.26235 * 0.06989 * 18 17 15 37 37 H 1.07999 * 126.24152 * 180.25823 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9164 0.8670 -2.3805 7 6 1.8711 -0.4815 -3.7320 8 7 2.6272 -1.5508 -3.8527 9 14 1.2478 0.3986 -5.2572 10 1 2.2252 1.4411 -5.6613 11 1 1.0836 -0.5805 -6.3614 12 1 -0.0607 1.0352 -4.9613 13 6 2.0401 -0.7213 1.2492 14 8 1.5561 -0.0367 2.4348 15 6 1.9181 -0.5496 3.6284 16 8 2.6187 -1.5419 3.6764 17 6 1.4649 0.0903 4.8705 18 6 1.7602 -0.3290 6.1525 19 6 1.1417 0.5544 7.0346 20 6 0.4699 1.4948 6.2786 21 6 -0.3030 2.5865 6.7902 22 7 -0.9139 3.4539 7.1959 23 7 0.6745 1.2075 4.9582 24 1 0.3199 1.7100 4.2082 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 3.1301 1.4426 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 -0.7208 -1.2495 32 1 1.6767 -1.7488 -1.2493 33 1 2.8616 -1.8822 -4.7337 34 1 3.1301 -0.7209 1.2494 35 1 1.6768 -1.7489 1.2492 36 1 2.3644 -1.1826 6.4221 37 1 1.1786 0.5102 8.1130 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798878739.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:11 Heat of formation + Delta-G solvation = -46.631444 kcal Electronic energy + Delta-G solvation = -20402.779375 eV Core-core repulsion = 17145.024510 eV Total energy + Delta-G solvation = -3257.754865 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.54162 -41.09046 -38.70463 -37.64525 -36.91495 -34.41325 -32.37686 -31.29587 -29.28410 -28.02082 -27.96507 -25.73757 -24.60719 -22.60055 -21.53477 -20.63565 -19.84728 -18.88938 -18.34815 -17.55639 -17.41220 -16.52234 -15.98147 -15.77084 -15.26512 -15.21017 -14.82028 -14.62975 -14.39115 -14.22609 -14.06186 -13.88803 -13.81999 -13.74653 -13.33274 -12.97918 -12.75567 -12.67889 -12.32382 -12.28276 -12.01715 -11.87043 -11.85856 -11.37460 -11.05413 -10.90056 -10.52293 -10.22228 -9.52741 -8.15711 -6.23099 -0.26892 0.96544 1.06737 1.42513 1.42855 1.51704 1.54736 1.99789 2.00546 2.33601 2.43889 2.88156 3.19284 3.62093 3.92130 3.95147 4.08327 4.16528 4.22763 4.52375 4.60370 4.72335 4.77871 5.00025 5.06082 5.11328 5.12585 5.33131 5.40098 5.43644 5.47019 5.50990 5.53562 5.65499 5.75252 5.87866 6.03706 6.27565 6.28344 6.60420 6.91042 7.44620 8.96805 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.030695 B = 0.003362 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.967202 B = 8327.218306 C = 9042.814689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.055 4.055 3 C -0.120 4.120 4 C 0.039 3.961 5 C -0.515 4.515 6 H 0.071 0.929 7 C -0.002 4.002 8 N -0.937 5.937 9 Si 0.957 3.043 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.261 1.261 13 C 0.092 3.908 14 O -0.347 6.347 15 C 0.529 3.471 16 O -0.522 6.522 17 C -0.002 4.002 18 C -0.100 4.100 19 C -0.111 4.111 20 C 0.103 3.897 21 C 0.300 3.700 22 N -0.430 5.430 23 N -0.497 5.497 24 H 0.438 0.562 25 H 0.067 0.933 26 H 0.053 0.947 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.054 0.946 30 H 0.067 0.933 31 H -0.009 1.009 32 H -0.008 1.008 33 H 0.261 0.739 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.175 0.825 37 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.637 5.139 20.583 21.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.055 4.055 3 C -0.177 4.177 4 C 0.002 3.998 5 C -0.553 4.553 6 H 0.089 0.911 7 C -0.199 4.199 8 N -0.578 5.578 9 Si 0.782 3.218 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.185 1.185 13 C 0.018 3.982 14 O -0.264 6.264 15 C 0.374 3.626 16 O -0.412 6.412 17 C -0.118 4.118 18 C -0.126 4.126 19 C -0.139 4.139 20 C -0.017 4.017 21 C -0.015 4.015 22 N -0.107 5.107 23 N -0.094 5.094 24 H 0.279 0.721 25 H 0.086 0.914 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.010 0.990 32 H 0.010 0.990 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.192 0.808 37 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -4.359 6.156 20.851 22.173 hybrid contribution 0.211 -0.282 -1.991 2.022 sum -4.148 5.874 18.860 20.184 Atomic orbital electron populations 1.21654 0.93539 1.00975 1.01554 1.20639 0.97067 0.96538 0.91289 1.21657 0.99824 0.94683 1.01576 1.18986 0.94621 0.94398 0.91778 1.21539 1.30583 1.12151 0.90994 0.91104 1.25898 0.95625 0.95818 1.02573 1.70098 1.38658 1.24808 1.24197 0.85563 0.79159 0.78173 0.78876 1.20141 1.21457 1.18514 1.23187 0.98625 0.95508 0.80841 1.86509 1.69624 1.55618 1.14616 1.20259 0.77224 0.81633 0.83458 1.90907 1.36609 1.25808 1.87827 1.19377 1.06011 0.93994 0.92458 1.21585 1.01521 1.01385 0.88100 1.21614 0.98151 0.92832 1.01253 1.15671 1.05744 0.96567 0.83683 1.24224 0.92037 0.91342 0.93915 1.81381 1.10770 1.10829 1.07768 1.41889 1.37885 1.22222 1.07403 0.72090 0.91390 0.92774 0.94188 0.94190 0.92740 0.91381 0.99028 0.99012 0.93064 0.91915 0.91913 0.80762 0.78979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.09 8.08 71.98 0.58 -3.51 16 2 C -0.06 -2.07 0.61 -52.18 -0.03 -2.10 16 3 C -0.12 -4.09 8.08 71.98 0.58 -3.51 16 4 C 0.04 1.94 4.04 29.85 0.12 2.06 16 5 C -0.51 -27.13 7.65 25.60 0.20 -26.94 16 6 H 0.07 3.53 5.68 -2.91 -0.02 3.51 16 7 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 8 N -0.94 -55.78 13.29 21.45 0.28 -55.49 16 9 Si 0.96 42.97 29.54 68.60 2.03 45.00 16 10 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 11 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 12 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 13 C 0.09 3.10 4.33 71.98 0.31 3.41 16 14 O -0.35 -9.53 8.89 -57.76 -0.51 -10.04 16 15 C 0.53 13.66 7.94 70.09 0.56 14.21 16 16 O -0.52 -16.63 16.67 19.62 0.33 -16.30 16 17 C 0.00 -0.04 7.07 40.54 0.29 0.24 16 18 C -0.10 -1.35 10.60 22.49 0.24 -1.11 16 19 C -0.11 -1.04 10.80 22.50 0.24 -0.80 16 20 C 0.10 1.24 6.93 39.61 0.27 1.52 16 21 C 0.30 4.48 15.89 88.33 1.40 5.89 16 22 N -0.43 -8.61 18.54 19.00 0.35 -8.26 16 23 N -0.50 -6.84 6.13 -176.00 -1.08 -7.91 16 24 H 0.44 4.93 8.96 -92.71 -0.83 4.10 16 25 H 0.07 1.88 7.68 -2.39 -0.02 1.86 16 26 H 0.05 1.98 6.62 -2.39 -0.02 1.96 16 27 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 29 H 0.05 1.98 6.62 -2.39 -0.02 1.97 16 30 H 0.07 1.88 7.68 -2.39 -0.02 1.86 16 31 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 32 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 33 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 34 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.19 0.59 8.06 -2.91 -0.02 0.56 16 Total: -1.00 -66.30 328.35 6.89 -59.41 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: 0.27 Total: 3.87 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: 5.22 Total: -10.28 kcal Atomic # 7 Polarization: -71.23 SS G_CDS: -0.44 Total: -71.67 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.19 Total: -26.34 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -66.30 6.89 -59.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798878739.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.779 kcal (2) G-P(sol) polarization free energy of solvation -66.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds