Wall clock time and date at job start Mon Mar 30 2020 20:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47113 * 2 1 4 4 H 1.08996 * 109.47125 * 55.00202 * 3 2 1 5 5 C 1.50706 * 109.46991 * 175.00120 * 3 2 1 6 6 H 1.07995 * 119.99828 * 120.00354 * 5 3 2 7 7 C 1.37877 * 119.99858 * 299.99494 * 5 3 2 8 8 N 1.31516 * 119.99751 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99824 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47077 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47056 * 120.00381 * 9 7 5 12 12 H 1.48500 * 109.46726 * 240.00011 * 9 7 5 13 13 O 1.45204 * 109.47183 * 294.99735 * 3 2 1 14 14 C 1.34709 * 116.99916 * 89.99830 * 13 3 2 15 15 O 1.21471 * 119.99970 * 0.02562 * 14 13 3 16 16 C 1.47714 * 119.99992 * 180.02562 * 14 13 3 17 17 C 1.40016 * 120.94271 * 354.52335 * 16 14 13 18 18 N 1.32128 * 118.91567 * 179.97438 * 17 16 14 19 19 C 1.31886 * 120.96820 * 0.02562 * 18 17 16 20 20 N 1.31862 * 122.11244 * 359.97438 * 19 18 17 21 21 C 1.32148 * 120.96867 * 0.02562 * 20 19 18 22 22 C 1.50702 * 120.53512 * 180.02562 * 21 20 19 23 23 C 1.52997 * 117.50117 * 359.81442 * 22 21 20 24 24 C 1.52995 * 60.00016 * 252.50617 * 23 22 21 25 25 H 1.08995 * 109.46630 * 60.00265 * 1 2 3 26 26 H 1.09000 * 109.46846 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47079 * 300.00362 * 1 2 3 28 28 H 1.09000 * 109.47759 * 239.99935 * 2 1 3 29 29 H 1.09000 * 109.47084 * 119.99803 * 2 1 3 30 30 H 0.96998 * 119.99610 * 179.97438 * 8 7 5 31 31 H 1.08004 * 120.54520 * 0.02562 * 17 16 14 32 32 H 1.08007 * 118.94123 * 179.71646 * 19 18 17 33 33 H 1.09003 * 115.54918 * 145.52138 * 22 21 20 34 34 H 1.08998 * 117.50047 * 0.02562 * 23 22 21 35 35 H 1.09008 * 117.49917 * 145.01717 * 23 22 21 36 36 H 1.08999 * 117.50205 * 252.50942 * 24 23 22 37 37 H 1.09000 * 117.51558 * 107.47752 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 3.4062 0.3368 2.1729 9 14 6.0050 0.8813 1.3818 10 1 6.5987 1.5473 0.1948 11 1 6.3990 1.6167 2.6102 12 1 6.4970 -0.5175 1.4630 13 8 1.6559 2.0917 -1.2408 14 6 0.4685 2.7277 -1.2561 15 8 -0.2268 2.7401 -0.2602 16 6 0.0120 3.4101 -2.4841 17 6 0.8442 3.5063 -3.6060 18 7 0.3949 4.1251 -4.6835 19 6 -0.8160 4.6470 -4.7110 20 7 -1.6321 4.5793 -3.6775 21 6 -1.2648 3.9789 -2.5592 22 6 -2.2056 3.9067 -1.3841 23 6 -3.5829 4.5542 -1.5411 24 6 -2.5248 5.2124 -0.6533 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8293 -0.0616 2.9495 31 1 1.8368 3.0810 -3.5912 32 1 -1.1483 5.1496 -5.6074 33 1 -2.1417 2.9977 -0.7858 34 1 -3.8087 5.0321 -2.4943 35 1 -4.4255 4.0712 -1.0461 36 1 -2.6712 5.1624 0.4256 37 1 -2.0540 6.1236 -1.0222 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835341217.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:27 Heat of formation + Delta-G solvation = -17.225042 kcal Electronic energy + Delta-G solvation = -21468.557533 eV Core-core repulsion = 18212.077825 eV Total energy + Delta-G solvation = -3256.479708 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.30487 -39.40523 -37.29245 -35.82584 -33.70967 -33.36662 -32.22179 -31.33154 -27.45576 -25.57943 -25.25931 -23.26544 -22.32460 -21.33577 -21.24223 -19.72637 -17.90943 -17.45580 -17.02515 -16.32349 -15.80439 -15.63333 -15.21393 -14.60544 -14.57827 -14.09650 -13.67025 -13.16914 -12.92214 -12.37548 -12.04527 -11.75245 -11.57299 -11.52423 -11.38780 -11.29925 -11.22849 -11.02480 -10.72717 -10.58360 -10.30281 -10.25894 -9.83792 -9.56132 -9.48253 -9.41127 -9.33324 -8.88263 -8.51946 -6.24650 -4.31923 0.41032 0.94237 2.97674 3.20055 3.25799 3.29949 3.42223 3.62842 3.83633 3.99221 4.05019 4.28089 4.33714 4.79063 4.97396 5.03872 5.07957 5.08722 5.30024 5.56456 5.68101 5.80360 5.90759 6.15411 6.15924 6.21497 6.22181 6.27255 6.38276 6.76239 6.83448 6.89187 7.08357 7.14919 7.54461 7.65738 7.84197 7.92041 8.07450 8.48774 8.79266 9.33617 10.82146 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.023039 B = 0.005037 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.046132 B = 5557.630572 C = 6173.994128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.224 3.776 4 H 0.050 0.950 5 C -0.522 4.522 6 H 0.070 0.930 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.281 1.281 13 O -0.349 6.349 14 C 0.506 3.494 15 O -0.497 6.497 16 C -0.216 4.216 17 C 0.206 3.794 18 N -0.533 5.533 19 C 0.314 3.686 20 N -0.527 5.527 21 C 0.262 3.738 22 C -0.122 4.122 23 C -0.163 4.163 24 C -0.146 4.146 25 H 0.030 0.970 26 H 0.034 0.966 27 H 0.054 0.946 28 H 0.042 0.958 29 H 0.110 0.890 30 H 0.266 0.734 31 H 0.187 0.813 32 H 0.200 0.800 33 H 0.149 0.851 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.498 6.291 -8.679 14.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.560 4.560 6 H 0.088 0.912 7 C -0.138 4.138 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.207 1.207 13 O -0.266 6.266 14 C 0.349 3.651 15 O -0.388 6.388 16 C -0.222 4.222 17 C 0.040 3.960 18 N -0.247 5.247 19 C 0.027 3.973 20 N -0.242 5.242 21 C 0.117 3.883 22 C -0.141 4.141 23 C -0.201 4.201 24 C -0.184 4.184 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.128 0.872 30 H 0.076 0.924 31 H 0.204 0.796 32 H 0.216 0.784 33 H 0.167 0.833 34 H 0.124 0.876 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.937 6.625 -9.025 14.970 hybrid contribution 1.292 -0.555 0.898 1.668 sum -8.645 6.070 -8.127 13.328 Atomic orbital electron populations 1.21866 0.98394 0.99142 1.00636 1.22035 0.92632 0.99253 1.03512 1.20764 0.95151 0.88734 0.78207 0.93238 1.21062 0.89501 1.39115 1.06354 0.91199 1.24873 0.99274 0.94672 0.95018 1.69891 1.35357 1.37728 1.09487 0.86232 0.83810 0.77932 0.78271 1.19443 1.20739 1.20677 1.86519 1.33142 1.62278 1.44618 1.20339 0.81399 0.76943 0.86450 1.90738 1.54827 1.58527 1.34678 1.21043 0.97542 1.06542 0.97031 1.23822 0.99399 0.87159 0.85616 1.68518 1.16408 1.11698 1.28056 1.25188 0.85304 0.90787 0.96035 1.68256 1.36778 1.18697 1.00422 1.20977 0.89898 0.85416 0.92004 1.21345 0.95498 1.00982 0.96234 1.23012 0.91512 1.03442 1.02097 1.22870 1.02207 0.94440 0.98929 0.95116 0.94728 0.92690 0.93891 0.87189 0.92371 0.79626 0.78363 0.83324 0.87596 0.88419 0.87808 0.89059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.56 37.16 0.32 -2.67 16 2 C -0.14 -3.24 5.49 -26.73 -0.15 -3.39 16 3 C 0.22 5.65 2.25 -27.88 -0.06 5.59 16 4 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 5 C -0.52 -14.04 8.90 -34.44 -0.31 -14.34 16 6 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -24.28 11.29 55.43 0.63 -23.65 16 9 Si 0.91 20.49 29.54 -169.99 -5.02 15.47 16 10 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 O -0.35 -7.81 9.17 -40.52 -0.37 -8.18 16 14 C 0.51 10.12 6.33 34.60 0.22 10.34 16 15 O -0.50 -10.51 10.75 -19.24 -0.21 -10.72 16 16 C -0.22 -3.60 5.90 -104.71 -0.62 -4.22 16 17 C 0.21 3.07 10.90 -16.76 -0.18 2.89 16 18 N -0.53 -7.32 10.42 -14.23 -0.15 -7.46 16 19 C 0.31 3.78 12.27 -92.02 -1.13 2.66 16 20 N -0.53 -7.19 9.44 -10.46 -0.10 -7.29 16 21 C 0.26 4.02 6.54 -81.80 -0.53 3.48 16 22 C -0.12 -1.76 4.76 -91.77 -0.44 -2.20 16 23 C -0.16 -1.87 10.04 -26.74 -0.27 -2.14 16 24 C -0.15 -1.83 10.23 -26.74 -0.27 -2.10 16 25 H 0.03 0.61 6.06 -51.93 -0.31 0.30 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 1.19 7.79 -51.93 -0.40 0.78 16 28 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.11 2.86 5.95 -51.93 -0.31 2.55 16 30 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.19 2.58 7.73 -52.48 -0.41 2.17 16 32 H 0.20 1.56 8.06 -52.48 -0.42 1.13 16 33 H 0.15 2.39 6.14 -51.93 -0.32 2.08 16 34 H 0.11 1.19 7.58 -51.93 -0.39 0.80 16 35 H 0.10 0.96 8.14 -51.92 -0.42 0.54 16 36 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 312.70 15.07 4.71 4.71 Total: -1.00 -28.68 312.70 -8.62 -37.30 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -4.60 Total: 4.31 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -3.52 Total: -4.49 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.38 Total: -38.40 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.58 Total: -18.90 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.68 -8.62 -37.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835341217.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.079 kcal (2) G-P(sol) polarization free energy of solvation -28.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds