Wall clock time and date at job start Mon Mar 30 2020 20:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47113 * 2 1 4 4 H 1.08996 * 109.47125 * 55.00202 * 3 2 1 5 5 C 1.50706 * 109.46991 * 175.00120 * 3 2 1 6 6 H 1.07995 * 119.99828 * 120.00354 * 5 3 2 7 7 C 1.37877 * 119.99858 * 299.99494 * 5 3 2 8 8 N 1.31516 * 119.99751 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99824 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47077 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47056 * 120.00381 * 9 7 5 12 12 H 1.48500 * 109.46726 * 240.00011 * 9 7 5 13 13 O 1.45204 * 109.47183 * 294.99735 * 3 2 1 14 14 C 1.34709 * 116.99916 * 89.99830 * 13 3 2 15 15 O 1.21471 * 119.99970 * 0.02562 * 14 13 3 16 16 C 1.47714 * 119.99992 * 180.02562 * 14 13 3 17 17 C 1.40016 * 120.94271 * 354.52335 * 16 14 13 18 18 N 1.32128 * 118.91567 * 179.97438 * 17 16 14 19 19 C 1.31886 * 120.96820 * 0.02562 * 18 17 16 20 20 N 1.31862 * 122.11244 * 359.97438 * 19 18 17 21 21 C 1.32148 * 120.96867 * 0.02562 * 20 19 18 22 22 C 1.50702 * 120.53512 * 180.02562 * 21 20 19 23 23 C 1.52997 * 117.50117 * 359.81442 * 22 21 20 24 24 C 1.52995 * 60.00016 * 252.50617 * 23 22 21 25 25 H 1.08995 * 109.46630 * 60.00265 * 1 2 3 26 26 H 1.09000 * 109.46846 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47079 * 300.00362 * 1 2 3 28 28 H 1.09000 * 109.47759 * 239.99935 * 2 1 3 29 29 H 1.09000 * 109.47084 * 119.99803 * 2 1 3 30 30 H 0.96998 * 119.99610 * 179.97438 * 8 7 5 31 31 H 1.08004 * 120.54520 * 0.02562 * 17 16 14 32 32 H 1.08007 * 118.94123 * 179.71646 * 19 18 17 33 33 H 1.09003 * 115.54918 * 145.52138 * 22 21 20 34 34 H 1.08998 * 117.50047 * 0.02562 * 23 22 21 35 35 H 1.09008 * 117.49917 * 145.01717 * 23 22 21 36 36 H 1.08999 * 117.50205 * 252.50942 * 24 23 22 37 37 H 1.09000 * 117.51558 * 107.47752 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 3.4062 0.3368 2.1729 9 14 6.0050 0.8813 1.3818 10 1 6.5987 1.5473 0.1948 11 1 6.3990 1.6167 2.6102 12 1 6.4970 -0.5175 1.4630 13 8 1.6559 2.0917 -1.2408 14 6 0.4685 2.7277 -1.2561 15 8 -0.2268 2.7401 -0.2602 16 6 0.0120 3.4101 -2.4841 17 6 0.8442 3.5063 -3.6060 18 7 0.3949 4.1251 -4.6835 19 6 -0.8160 4.6470 -4.7110 20 7 -1.6321 4.5793 -3.6775 21 6 -1.2648 3.9789 -2.5592 22 6 -2.2056 3.9067 -1.3841 23 6 -3.5829 4.5542 -1.5411 24 6 -2.5248 5.2124 -0.6533 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8293 -0.0616 2.9495 31 1 1.8368 3.0810 -3.5912 32 1 -1.1483 5.1496 -5.6074 33 1 -2.1417 2.9977 -0.7858 34 1 -3.8087 5.0321 -2.4943 35 1 -4.4255 4.0712 -1.0461 36 1 -2.6712 5.1624 0.4256 37 1 -2.0540 6.1236 -1.0222 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835341217.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:27 Heat of formation + Delta-G solvation = -31.543124 kcal Electronic energy + Delta-G solvation = -21469.178411 eV Core-core repulsion = 18212.077825 eV Total energy + Delta-G solvation = -3257.100587 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.49211 -41.00543 -38.40693 -37.49047 -35.54254 -34.53889 -33.63120 -33.06755 -29.37488 -26.88011 -26.39649 -25.13692 -23.33080 -22.88506 -22.33617 -21.53545 -19.29639 -19.00834 -18.35105 -17.81588 -17.48979 -17.21083 -16.43679 -16.34346 -15.79149 -15.14648 -15.00126 -14.78378 -14.66341 -14.05641 -13.46527 -13.35643 -13.15705 -13.12801 -12.85673 -12.78267 -12.53190 -12.51437 -12.36754 -12.13120 -11.77948 -11.66180 -11.43165 -11.34954 -10.92792 -10.83322 -10.63117 -10.50613 -10.44542 -8.27393 -6.43440 -0.77049 -0.20495 1.42552 1.42924 1.52289 1.56041 1.83306 2.40178 2.50453 2.74664 2.90843 3.02976 3.04218 3.23835 3.59775 3.80921 3.95617 4.08804 4.12367 4.32362 4.37861 4.39296 4.55109 4.69281 4.74424 4.83055 4.93636 5.08077 5.10191 5.18237 5.20585 5.28385 5.35592 5.51543 5.66459 5.71019 5.95413 6.09891 6.59775 6.82404 6.91322 7.27442 8.79501 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.023039 B = 0.005037 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.046132 B = 5557.630572 C = 6173.994128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.130 4.130 3 C 0.229 3.771 4 H 0.013 0.987 5 C -0.548 4.548 6 H 0.067 0.933 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 0.977 3.023 10 H -0.264 1.264 11 H -0.277 1.277 12 H -0.273 1.273 13 O -0.356 6.356 14 C 0.504 3.496 15 O -0.514 6.514 16 C -0.242 4.242 17 C 0.213 3.787 18 N -0.537 5.537 19 C 0.326 3.674 20 N -0.527 5.527 21 C 0.267 3.733 22 C -0.151 4.151 23 C -0.135 4.135 24 C -0.146 4.146 25 H 0.033 0.967 26 H 0.059 0.941 27 H 0.040 0.960 28 H 0.045 0.955 29 H 0.088 0.912 30 H 0.270 0.730 31 H 0.190 0.810 32 H 0.246 0.754 33 H 0.126 0.874 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.107 0.893 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.999 7.079 -10.335 16.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.168 4.168 3 C 0.176 3.824 4 H 0.031 0.969 5 C -0.586 4.586 6 H 0.085 0.915 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.801 3.199 10 H -0.188 1.188 11 H -0.203 1.203 12 H -0.198 1.198 13 O -0.272 6.272 14 C 0.348 3.652 15 O -0.406 6.406 16 C -0.248 4.248 17 C 0.047 3.953 18 N -0.251 5.251 19 C 0.041 3.959 20 N -0.241 5.241 21 C 0.121 3.879 22 C -0.170 4.170 23 C -0.172 4.172 24 C -0.184 4.184 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.207 0.793 32 H 0.262 0.738 33 H 0.144 0.856 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.126 0.874 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.461 7.425 -10.702 16.706 hybrid contribution 1.351 -0.724 1.350 2.042 sum -9.110 6.701 -9.352 14.675 Atomic orbital electron populations 1.21709 0.96265 1.00583 1.00096 1.21880 0.94480 0.98065 1.02395 1.20432 0.94543 0.89206 0.78238 0.96945 1.21349 0.90448 1.39878 1.06884 0.91498 1.25732 1.03919 0.93917 0.94408 1.70007 1.37265 1.37942 1.09887 0.85210 0.78075 0.78258 0.78345 1.18815 1.20295 1.19793 1.86492 1.34775 1.62938 1.43024 1.20889 0.80316 0.76405 0.87586 1.90730 1.54970 1.59121 1.35730 1.20851 0.98948 1.08821 0.96198 1.23904 0.99346 0.86672 0.85401 1.68641 1.17299 1.12027 1.27171 1.26171 0.84241 0.88819 0.96712 1.68390 1.36856 1.18747 1.00147 1.21113 0.89281 0.84689 0.92773 1.21283 0.97906 1.01057 0.96750 1.23093 0.90497 1.01502 1.02091 1.22944 1.02590 0.93424 0.99393 0.94755 0.92179 0.94071 0.93645 0.89424 0.92050 0.79272 0.73776 0.85593 0.86818 0.86601 0.87427 0.88896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.48 8.56 71.98 0.62 -4.87 16 2 C -0.13 -6.37 5.49 30.60 0.17 -6.20 16 3 C 0.23 12.04 2.25 29.85 0.07 12.10 16 4 H 0.01 0.75 7.16 -2.39 -0.02 0.73 16 5 C -0.55 -30.22 8.90 25.60 0.23 -29.99 16 6 H 0.07 3.62 7.81 -2.91 -0.02 3.60 16 7 C 0.02 1.09 5.29 84.65 0.45 1.53 16 8 N -0.91 -51.06 11.29 21.45 0.24 -50.82 16 9 Si 0.98 42.12 29.54 68.60 2.03 44.14 16 10 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 11 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 12 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 13 O -0.36 -16.46 9.17 -56.19 -0.52 -16.98 16 14 C 0.50 20.82 6.33 70.33 0.45 21.27 16 15 O -0.51 -22.73 10.75 19.93 0.21 -22.51 16 16 C -0.24 -8.09 5.90 -19.92 -0.12 -8.21 16 17 C 0.21 6.21 10.90 85.08 0.93 7.13 16 18 N -0.54 -13.58 10.42 -198.92 -2.07 -15.65 16 19 C 0.33 6.82 12.27 180.84 2.22 9.04 16 20 N -0.53 -13.10 9.44 -187.02 -1.77 -14.86 16 21 C 0.27 7.95 6.54 42.93 0.28 8.23 16 22 C -0.15 -4.30 4.76 -11.54 -0.05 -4.35 16 23 C -0.13 -2.81 10.04 30.59 0.31 -2.51 16 24 C -0.15 -3.49 10.23 30.59 0.31 -3.18 16 25 H 0.03 1.40 6.06 -2.39 -0.01 1.39 16 26 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.04 1.83 7.79 -2.39 -0.02 1.81 16 28 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.09 4.70 5.95 -2.39 -0.01 4.69 16 30 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 31 H 0.19 5.24 7.73 -2.91 -0.02 5.22 16 32 H 0.25 2.65 8.06 -2.91 -0.02 2.62 16 33 H 0.13 4.18 6.14 -2.39 -0.01 4.17 16 34 H 0.11 2.22 7.58 -2.39 -0.02 2.21 16 35 H 0.12 1.99 8.14 -2.38 -0.02 1.97 16 36 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -62.99 312.70 5.06 -57.93 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 1.09 Total: 18.74 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 5.85 Total: 0.01 kcal Atomic # 7 Polarization: -77.73 SS G_CDS: -3.60 Total: -81.33 kcal Atomic # 8 Polarization: -39.19 SS G_CDS: -0.30 Total: -39.49 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.14 kcal Total: -62.99 5.06 -57.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835341217.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.388 kcal (2) G-P(sol) polarization free energy of solvation -62.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds