Wall clock time and date at job start Mon Mar 30 2020 20:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53009 * 109.46978 * 2 1 4 4 H 1.08998 * 109.46788 * 305.00281 * 3 2 1 5 5 C 1.50692 * 109.47361 * 184.99946 * 3 2 1 6 6 H 1.08001 * 120.00278 * 240.00039 * 5 3 2 7 7 C 1.37882 * 119.99966 * 59.99554 * 5 3 2 8 8 N 1.31515 * 119.99940 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00010 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46952 * 60.00575 * 9 7 5 11 11 H 1.48499 * 109.47140 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47187 * 300.00268 * 9 7 5 13 13 O 1.45198 * 109.46915 * 64.99517 * 3 2 1 14 14 C 1.34707 * 117.00701 * 269.99828 * 13 3 2 15 15 O 1.21473 * 119.99575 * 0.02562 * 14 13 3 16 16 C 1.47712 * 120.00388 * 180.02562 * 14 13 3 17 17 C 1.40018 * 120.94198 * 354.19497 * 16 14 13 18 18 N 1.32126 * 118.91496 * 180.02562 * 17 16 14 19 19 C 1.31888 * 120.97257 * 359.97438 * 18 17 16 20 20 N 1.31864 * 122.10825 * 0.02562 * 19 18 17 21 21 C 1.32156 * 120.97147 * 359.97438 * 20 19 18 22 22 C 1.50700 * 120.53981 * 180.02562 * 21 20 19 23 23 C 1.52999 * 117.49968 * 359.77538 * 22 21 20 24 24 C 1.52994 * 60.00172 * 252.51218 * 23 22 21 25 25 H 1.08999 * 109.46819 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47384 * 299.99746 * 1 2 3 27 27 H 1.09000 * 109.47729 * 60.00488 * 1 2 3 28 28 H 1.08991 * 109.47518 * 240.00048 * 2 1 3 29 29 H 1.09001 * 109.47142 * 119.99036 * 2 1 3 30 30 H 0.96999 * 120.00170 * 179.97438 * 8 7 5 31 31 H 1.08001 * 120.54206 * 0.04096 * 17 16 14 32 32 H 1.07996 * 118.95031 * 179.71649 * 19 18 17 33 33 H 1.08993 * 115.55007 * 145.48756 * 22 21 20 34 34 H 1.09006 * 117.50017 * 0.02562 * 23 22 21 35 35 H 1.08996 * 117.50472 * 145.02136 * 23 22 21 36 36 H 1.08998 * 117.50062 * 252.50656 * 24 23 22 37 37 H 1.09003 * 117.52124 * 107.47883 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 3.5417 1.4445 -0.1238 6 1 4.1470 1.8891 0.6523 7 6 4.1432 0.8785 -1.2279 8 7 3.4061 0.3375 -2.1733 9 14 6.0048 0.8815 -1.3818 10 1 6.5974 0.1476 -0.2349 11 1 6.3977 0.2180 -2.6508 12 1 6.4992 2.2818 -1.3822 13 8 1.6557 2.0917 1.2406 14 6 0.4683 2.7278 1.2560 15 8 -0.2273 2.7394 0.2602 16 6 0.0122 3.4111 2.4836 17 6 0.7386 3.3096 3.6763 18 7 0.2937 3.9368 4.7506 19 6 -0.8152 4.6497 4.7099 20 7 -1.5297 4.7720 3.6084 21 6 -1.1585 4.1784 2.4875 22 6 -1.9822 4.3252 1.2341 23 6 -3.2513 5.1756 1.3184 24 6 -3.3564 3.6531 1.2091 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 3.8292 -0.0603 -2.9502 31 1 1.6479 2.7282 3.7173 32 1 -1.1514 5.1452 5.6087 33 1 -1.4184 4.3529 0.3017 34 1 -3.4903 5.6292 2.2803 35 1 -3.5227 5.7630 0.4413 36 1 -3.6970 3.2390 0.2602 37 1 -3.6646 3.1044 2.0991 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835341219.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:30 Heat of formation + Delta-G solvation = -17.147858 kcal Electronic energy + Delta-G solvation = -21471.746452 eV Core-core repulsion = 18215.270091 eV Total energy + Delta-G solvation = -3256.476361 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.30375 -39.40358 -37.29378 -35.82477 -33.70590 -33.36635 -32.22192 -31.32295 -27.45578 -25.57485 -25.26079 -23.25280 -22.33099 -21.33324 -21.23706 -19.72295 -17.90070 -17.45268 -17.04101 -16.34989 -15.80347 -15.59265 -15.18381 -14.66181 -14.55462 -14.09731 -13.67465 -13.17545 -12.90904 -12.32900 -12.07533 -11.75862 -11.55082 -11.53850 -11.37156 -11.28548 -11.24290 -10.99974 -10.72090 -10.58871 -10.30721 -10.26692 -9.82989 -9.62430 -9.45517 -9.40096 -9.32256 -8.88857 -8.50820 -6.24031 -4.31593 0.41047 0.94165 2.97571 3.23012 3.25618 3.27805 3.41563 3.62787 3.83643 3.99412 4.04989 4.28306 4.33324 4.78957 4.97317 5.03823 5.08181 5.08701 5.30005 5.56443 5.67781 5.80309 5.90633 6.15400 6.17229 6.21382 6.24039 6.27551 6.39380 6.76520 6.83890 6.90243 7.09389 7.15525 7.54442 7.66107 7.84434 7.91985 8.07891 8.48883 8.78979 9.33801 10.82596 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.023129 B = 0.005044 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.327744 B = 5549.893338 C = 6191.693354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.224 3.776 4 H 0.049 0.951 5 C -0.524 4.524 6 H 0.069 0.931 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.350 6.350 14 C 0.506 3.494 15 O -0.497 6.497 16 C -0.216 4.216 17 C 0.206 3.794 18 N -0.533 5.533 19 C 0.314 3.686 20 N -0.527 5.527 21 C 0.263 3.737 22 C -0.122 4.122 23 C -0.163 4.163 24 C -0.146 4.146 25 H 0.033 0.967 26 H 0.030 0.970 27 H 0.054 0.946 28 H 0.110 0.890 29 H 0.042 0.958 30 H 0.267 0.733 31 H 0.187 0.813 32 H 0.200 0.800 33 H 0.149 0.851 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.634 6.037 8.739 14.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.172 3.828 4 H 0.067 0.933 5 C -0.562 4.562 6 H 0.087 0.913 7 C -0.138 4.138 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.200 1.200 13 O -0.266 6.266 14 C 0.349 3.651 15 O -0.388 6.388 16 C -0.221 4.221 17 C 0.040 3.960 18 N -0.247 5.247 19 C 0.027 3.973 20 N -0.241 5.241 21 C 0.117 3.883 22 C -0.140 4.140 23 C -0.201 4.201 24 C -0.184 4.184 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.128 0.872 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.203 0.797 32 H 0.216 0.784 33 H 0.167 0.833 34 H 0.124 0.876 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.074 6.370 9.075 14.980 hybrid contribution 1.291 -0.562 -0.868 1.654 sum -8.783 5.807 8.207 13.350 Atomic orbital electron populations 1.21856 0.98312 0.99088 1.00718 1.22036 0.92668 0.99235 1.03488 1.20747 0.95088 0.88741 0.78186 0.93279 1.20984 0.89510 1.39307 1.06400 0.91314 1.24868 0.99257 0.94648 0.95005 1.69871 1.35538 1.37612 1.09437 0.86337 0.83794 0.78524 0.77532 1.19887 1.21004 1.19983 1.86516 1.33145 1.62287 1.44622 1.20339 0.81332 0.77035 0.86432 1.90740 1.55215 1.57894 1.34904 1.21044 0.99673 1.05105 0.96313 1.23812 0.96724 0.89571 0.85906 1.68514 1.15278 1.10153 1.30736 1.25185 0.86149 0.90276 0.95701 1.68259 1.33798 1.22655 0.99433 1.20979 0.88954 0.85605 0.92750 1.21338 0.89837 1.07392 0.95454 1.23012 0.99708 0.93489 1.03847 1.22863 0.96468 0.95616 1.03480 0.94793 0.95054 0.92703 0.87213 0.93905 0.92256 0.79657 0.78364 0.83332 0.87596 0.88405 0.87830 0.89100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.56 37.15 0.32 -2.67 16 2 C -0.14 -3.25 5.49 -26.73 -0.15 -3.39 16 3 C 0.22 5.68 2.25 -27.88 -0.06 5.62 16 4 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 5 C -0.52 -14.10 8.90 -34.44 -0.31 -14.40 16 6 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -24.28 11.29 55.43 0.63 -23.66 16 9 Si 0.91 20.51 29.54 -169.99 -5.02 15.49 16 10 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 O -0.35 -7.81 9.17 -40.51 -0.37 -8.18 16 14 C 0.51 10.12 6.33 34.60 0.22 10.34 16 15 O -0.50 -10.50 10.75 -19.25 -0.21 -10.71 16 16 C -0.22 -3.60 5.91 -104.71 -0.62 -4.21 16 17 C 0.21 3.06 10.90 -16.76 -0.18 2.88 16 18 N -0.53 -7.31 10.42 -14.23 -0.15 -7.45 16 19 C 0.31 3.78 12.27 -92.01 -1.13 2.65 16 20 N -0.53 -7.19 9.44 -10.47 -0.10 -7.29 16 21 C 0.26 4.02 6.54 -81.80 -0.53 3.49 16 22 C -0.12 -1.76 4.75 -91.77 -0.44 -2.19 16 23 C -0.16 -1.87 10.04 -26.73 -0.27 -2.14 16 24 C -0.15 -1.81 10.23 -26.73 -0.27 -2.08 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.03 0.63 6.06 -51.93 -0.31 0.32 16 27 H 0.05 1.20 7.79 -51.93 -0.40 0.79 16 28 H 0.11 2.85 5.95 -51.93 -0.31 2.54 16 29 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.19 2.56 7.73 -52.49 -0.41 2.16 16 32 H 0.20 1.56 8.06 -52.49 -0.42 1.13 16 33 H 0.15 2.41 6.16 -51.93 -0.32 2.09 16 34 H 0.11 1.19 7.58 -51.93 -0.39 0.80 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 312.72 15.07 4.71 4.71 Total: -1.00 -28.63 312.72 -8.62 -37.26 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -4.60 Total: 4.33 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -3.52 Total: -4.50 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.38 Total: -38.40 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.58 Total: -18.89 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.63 -8.62 -37.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835341219.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.108 kcal (2) G-P(sol) polarization free energy of solvation -28.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds