Wall clock time and date at job start Mon Mar 30 2020 20:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53009 * 109.46978 * 2 1 4 4 H 1.08998 * 109.46788 * 305.00281 * 3 2 1 5 5 C 1.50692 * 109.47361 * 184.99946 * 3 2 1 6 6 H 1.08001 * 120.00278 * 240.00039 * 5 3 2 7 7 C 1.37882 * 119.99966 * 59.99554 * 5 3 2 8 8 N 1.31515 * 119.99940 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00010 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46952 * 60.00575 * 9 7 5 11 11 H 1.48499 * 109.47140 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47187 * 300.00268 * 9 7 5 13 13 O 1.45198 * 109.46915 * 64.99517 * 3 2 1 14 14 C 1.34707 * 117.00701 * 269.99828 * 13 3 2 15 15 O 1.21473 * 119.99575 * 0.02562 * 14 13 3 16 16 C 1.47712 * 120.00388 * 180.02562 * 14 13 3 17 17 C 1.40018 * 120.94198 * 354.19497 * 16 14 13 18 18 N 1.32126 * 118.91496 * 180.02562 * 17 16 14 19 19 C 1.31888 * 120.97257 * 359.97438 * 18 17 16 20 20 N 1.31864 * 122.10825 * 0.02562 * 19 18 17 21 21 C 1.32156 * 120.97147 * 359.97438 * 20 19 18 22 22 C 1.50700 * 120.53981 * 180.02562 * 21 20 19 23 23 C 1.52999 * 117.49968 * 359.77538 * 22 21 20 24 24 C 1.52994 * 60.00172 * 252.51218 * 23 22 21 25 25 H 1.08999 * 109.46819 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47384 * 299.99746 * 1 2 3 27 27 H 1.09000 * 109.47729 * 60.00488 * 1 2 3 28 28 H 1.08991 * 109.47518 * 240.00048 * 2 1 3 29 29 H 1.09001 * 109.47142 * 119.99036 * 2 1 3 30 30 H 0.96999 * 120.00170 * 179.97438 * 8 7 5 31 31 H 1.08001 * 120.54206 * 0.04096 * 17 16 14 32 32 H 1.07996 * 118.95031 * 179.71649 * 19 18 17 33 33 H 1.08993 * 115.55007 * 145.48756 * 22 21 20 34 34 H 1.09006 * 117.50017 * 0.02562 * 23 22 21 35 35 H 1.08996 * 117.50472 * 145.02136 * 23 22 21 36 36 H 1.08998 * 117.50062 * 252.50656 * 24 23 22 37 37 H 1.09003 * 117.52124 * 107.47883 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 3.5417 1.4445 -0.1238 6 1 4.1470 1.8891 0.6523 7 6 4.1432 0.8785 -1.2279 8 7 3.4061 0.3375 -2.1733 9 14 6.0048 0.8815 -1.3818 10 1 6.5974 0.1476 -0.2349 11 1 6.3977 0.2180 -2.6508 12 1 6.4992 2.2818 -1.3822 13 8 1.6557 2.0917 1.2406 14 6 0.4683 2.7278 1.2560 15 8 -0.2273 2.7394 0.2602 16 6 0.0122 3.4111 2.4836 17 6 0.7386 3.3096 3.6763 18 7 0.2937 3.9368 4.7506 19 6 -0.8152 4.6497 4.7099 20 7 -1.5297 4.7720 3.6084 21 6 -1.1585 4.1784 2.4875 22 6 -1.9822 4.3252 1.2341 23 6 -3.2513 5.1756 1.3184 24 6 -3.3564 3.6531 1.2091 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 3.8292 -0.0603 -2.9502 31 1 1.6479 2.7282 3.7173 32 1 -1.1514 5.1452 5.6087 33 1 -1.4184 4.3529 0.3017 34 1 -3.4903 5.6292 2.2803 35 1 -3.5227 5.7630 0.4413 36 1 -3.6970 3.2390 0.2602 37 1 -3.6646 3.1044 2.0991 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835341219.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:29 Heat of formation + Delta-G solvation = -31.430730 kcal Electronic energy + Delta-G solvation = -21472.365803 eV Core-core repulsion = 18215.270091 eV Total energy + Delta-G solvation = -3257.095713 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.48984 -41.00387 -38.40751 -37.48842 -35.53970 -34.53771 -33.63017 -33.06209 -29.37504 -26.87874 -26.39506 -25.12599 -23.33588 -22.87454 -22.33803 -21.53184 -19.29345 -18.98142 -18.41281 -17.79504 -17.52009 -17.13027 -16.47269 -16.31913 -15.81301 -15.14680 -14.99935 -14.77277 -14.66215 -14.03650 -13.45972 -13.34001 -13.27288 -13.01403 -12.84971 -12.77371 -12.54067 -12.51222 -12.36507 -12.14919 -11.77470 -11.64347 -11.45524 -11.35062 -10.97464 -10.80411 -10.61109 -10.50549 -10.44362 -8.26924 -6.43299 -0.76925 -0.20409 1.42546 1.45618 1.51566 1.54092 1.83286 2.40324 2.50578 2.74467 2.91271 3.03209 3.04329 3.23542 3.59712 3.81109 3.95609 4.08947 4.12550 4.32556 4.38669 4.40104 4.55960 4.69353 4.74577 4.83481 4.93664 5.08675 5.10491 5.18337 5.21468 5.28541 5.35895 5.51136 5.66801 5.71049 5.95590 6.10220 6.59404 6.82431 6.91314 7.27450 8.79434 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.023129 B = 0.005044 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.327744 B = 5549.893338 C = 6191.693354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.130 4.130 3 C 0.230 3.770 4 H 0.012 0.988 5 C -0.550 4.550 6 H 0.066 0.934 7 C 0.021 3.979 8 N -0.913 5.913 9 Si 0.977 3.023 10 H -0.264 1.264 11 H -0.278 1.278 12 H -0.271 1.271 13 O -0.356 6.356 14 C 0.504 3.496 15 O -0.514 6.514 16 C -0.242 4.242 17 C 0.213 3.787 18 N -0.537 5.537 19 C 0.326 3.674 20 N -0.527 5.527 21 C 0.267 3.733 22 C -0.152 4.152 23 C -0.137 4.137 24 C -0.142 4.142 25 H 0.059 0.941 26 H 0.034 0.966 27 H 0.039 0.961 28 H 0.087 0.913 29 H 0.045 0.955 30 H 0.270 0.730 31 H 0.191 0.809 32 H 0.246 0.754 33 H 0.124 0.876 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.156 6.748 10.449 16.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.168 4.168 3 C 0.177 3.823 4 H 0.030 0.970 5 C -0.588 4.588 6 H 0.085 0.915 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.801 3.199 10 H -0.189 1.189 11 H -0.203 1.203 12 H -0.196 1.196 13 O -0.272 6.272 14 C 0.348 3.652 15 O -0.405 6.405 16 C -0.248 4.248 17 C 0.047 3.953 18 N -0.251 5.251 19 C 0.041 3.959 20 N -0.241 5.241 21 C 0.121 3.879 22 C -0.171 4.171 23 C -0.174 4.174 24 C -0.180 4.180 25 H 0.078 0.922 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.106 0.894 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.208 0.792 32 H 0.262 0.738 33 H 0.141 0.859 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.126 0.874 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.619 7.094 10.805 16.728 hybrid contribution 1.360 -0.698 -1.337 2.031 sum -9.259 6.395 9.468 14.706 Atomic orbital electron populations 1.21696 0.96230 1.00520 1.00113 1.21877 0.94470 0.98033 1.02404 1.20417 0.94480 0.89226 0.78221 0.97003 1.21287 0.90481 1.40072 1.06957 0.91545 1.25728 1.03913 0.93885 0.94389 1.69993 1.37405 1.37825 1.09800 0.85319 0.78058 0.78690 0.77879 1.18916 1.20310 1.19566 1.86488 1.34783 1.62951 1.43022 1.20890 0.80264 0.76500 0.87556 1.90733 1.55377 1.58466 1.35958 1.20852 1.01435 1.07158 0.95368 1.23903 0.96549 0.89220 0.85635 1.68639 1.16079 1.10599 1.29813 1.26168 0.84803 0.88485 0.96486 1.68392 1.33954 1.22537 0.99266 1.21110 0.88293 0.84825 0.93632 1.21260 0.90743 1.10726 0.94324 1.23094 0.96305 0.92986 1.04967 1.22938 0.94491 0.96643 1.03912 0.92227 0.94731 0.94153 0.89449 0.93594 0.92027 0.79240 0.73781 0.85861 0.86810 0.86712 0.87376 0.88752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.46 8.56 71.98 0.62 -4.84 16 2 C -0.13 -6.35 5.49 30.59 0.17 -6.18 16 3 C 0.23 12.08 2.25 29.85 0.07 12.15 16 4 H 0.01 0.72 7.16 -2.39 -0.02 0.70 16 5 C -0.55 -30.39 8.90 25.60 0.23 -30.16 16 6 H 0.07 3.59 7.81 -2.91 -0.02 3.57 16 7 C 0.02 1.13 5.29 84.66 0.45 1.58 16 8 N -0.91 -51.05 11.29 21.45 0.24 -50.81 16 9 Si 0.98 42.12 29.54 68.60 2.03 44.14 16 10 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 11 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 12 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 13 O -0.36 -16.48 9.17 -56.16 -0.52 -16.99 16 14 C 0.50 20.83 6.33 70.33 0.45 21.28 16 15 O -0.51 -22.74 10.75 19.93 0.21 -22.53 16 16 C -0.24 -8.09 5.91 -19.92 -0.12 -8.21 16 17 C 0.21 6.19 10.90 85.08 0.93 7.12 16 18 N -0.54 -13.54 10.42 -198.93 -2.07 -15.61 16 19 C 0.33 6.82 12.27 180.84 2.22 9.04 16 20 N -0.53 -13.12 9.44 -187.02 -1.77 -14.89 16 21 C 0.27 7.97 6.54 42.93 0.28 8.25 16 22 C -0.15 -4.34 4.75 -11.54 -0.05 -4.39 16 23 C -0.14 -2.86 10.04 30.59 0.31 -2.56 16 24 C -0.14 -3.34 10.23 30.59 0.31 -3.03 16 25 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.03 1.42 6.06 -2.39 -0.01 1.40 16 27 H 0.04 1.80 7.79 -2.39 -0.02 1.78 16 28 H 0.09 4.69 5.95 -2.39 -0.01 4.67 16 29 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 31 H 0.19 5.21 7.73 -2.91 -0.02 5.18 16 32 H 0.25 2.65 8.06 -2.91 -0.02 2.62 16 33 H 0.12 4.17 6.16 -2.39 -0.01 4.16 16 34 H 0.11 2.24 7.58 -2.38 -0.02 2.22 16 35 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -62.96 312.72 5.06 -57.90 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 1.09 Total: 18.74 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: 5.85 Total: 0.03 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -3.60 Total: -81.31 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -0.30 Total: -39.52 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.14 kcal Total: -62.96 5.06 -57.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835341219.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.472 kcal (2) G-P(sol) polarization free energy of solvation -62.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds