Wall clock time and date at job start Mon Mar 30 2020 20:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00058 * 2 1 4 4 C 1.50702 * 109.47018 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.99511 * 271.96934 * 4 3 2 6 6 C 1.33023 * 120.00088 * 91.97336 * 4 3 2 7 7 C 1.47050 * 119.99982 * 350.85657 * 6 4 3 8 8 O 1.21613 * 120.00221 * 353.12797 * 7 6 4 9 9 N 1.34780 * 119.99821 * 173.11932 * 7 6 4 10 10 C 1.39361 * 120.00219 * 186.63764 * 9 7 6 11 11 C 1.38632 * 119.58442 * 174.30487 * 10 9 7 12 12 C 1.40797 * 118.79122 * 179.97438 * 11 10 9 13 13 C 1.41547 * 120.98990 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00582 * 323.30097 * 13 12 11 15 15 C 1.40034 * 119.99469 * 143.30167 * 13 12 11 16 16 N 1.30752 * 119.99650 * 159.16238 * 15 13 12 17 17 Si 1.86795 * 120.00228 * 339.16601 * 15 13 12 18 18 H 1.48500 * 109.47301 * 88.43133 * 17 15 13 19 19 H 1.48501 * 109.46837 * 208.42609 * 17 15 13 20 20 H 1.48495 * 109.47156 * 328.42555 * 17 15 13 21 21 C 1.41172 * 118.01348 * 0.02562 * 12 11 10 22 22 C 1.37587 * 119.02313 * 0.02562 * 21 12 11 23 23 N 1.32087 * 121.10703 * 359.97438 * 22 21 12 24 24 H 1.08998 * 109.46894 * 60.00210 * 1 2 3 25 25 H 1.08992 * 109.47183 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47089 * 300.00339 * 1 2 3 27 27 H 1.08997 * 109.47277 * 59.99702 * 3 2 1 28 28 H 1.08999 * 109.46983 * 299.99893 * 3 2 1 29 29 H 1.08994 * 109.47538 * 269.99813 * 5 4 3 30 30 H 1.09005 * 109.47201 * 30.00334 * 5 4 3 31 31 H 1.09005 * 109.46680 * 150.00170 * 5 4 3 32 32 H 1.07998 * 119.99638 * 170.86309 * 6 4 3 33 33 H 0.97006 * 119.99439 * 6.64499 * 9 7 6 34 34 H 1.08000 * 120.60237 * 0.02931 * 11 10 9 35 35 H 0.96995 * 119.99950 * 180.02562 * 16 15 13 36 36 H 1.07999 * 120.49201 * 180.02562 * 21 12 11 37 37 H 1.07995 * 119.44909 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.2606 1.0820 1.3035 6 6 4.1783 1.1737 -1.1522 7 6 3.4463 1.0727 -2.4236 8 8 2.2462 0.8754 -2.4203 9 7 4.1053 1.1989 -3.5925 10 6 3.3959 1.2420 -4.7913 11 6 4.0700 1.4906 -5.9769 12 6 3.3369 1.5298 -7.1783 13 6 3.9778 1.7804 -8.4153 14 1 4.7991 2.4799 -8.4661 15 6 3.5469 1.1212 -9.5732 16 7 3.8276 1.6166 -10.7502 17 14 2.5709 -0.4656 -9.4362 18 1 1.1234 -0.1495 -9.3367 19 1 2.8134 -1.3012 -10.6397 20 1 3.0002 -1.2076 -8.2237 21 6 1.9435 1.3129 -7.1123 22 6 1.3624 1.0746 -5.8882 23 7 2.0857 1.0459 -4.7833 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8464 -0.8900 29 1 4.5221 2.0806 1.6534 30 1 3.6310 0.5904 2.0451 31 1 5.1698 0.4993 1.1550 32 1 5.2564 1.2373 -1.1534 33 1 5.0734 1.2598 -3.5993 34 1 5.1381 1.6503 -5.9790 35 1 3.5288 1.1603 -11.5523 36 1 1.3426 1.3338 -8.0094 37 1 0.2969 0.9082 -5.8296 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844428507.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:38 Heat of formation + Delta-G solvation = -20.439123 kcal Electronic energy + Delta-G solvation = -20750.501885 eV Core-core repulsion = 17493.882804 eV Total energy + Delta-G solvation = -3256.619081 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.93800 -38.44980 -37.37745 -34.89272 -34.25829 -33.61784 -31.26726 -29.41022 -27.83047 -27.46406 -25.98248 -25.27353 -22.57450 -21.91392 -20.18688 -18.79931 -17.85238 -16.97113 -16.28946 -16.11234 -15.69178 -15.28824 -14.75025 -14.50022 -14.32079 -14.20290 -13.59328 -13.53035 -13.35489 -13.10942 -12.85542 -12.52334 -12.41003 -11.89137 -11.56718 -11.53000 -11.13654 -11.09345 -10.92831 -10.65291 -9.98388 -9.86167 -9.64533 -9.31288 -9.25929 -9.05840 -8.18850 -7.86392 -7.23713 -7.01517 -4.68532 1.27825 2.41477 2.63627 3.11591 3.17089 3.28628 3.52062 3.67684 3.95147 4.09975 4.58715 4.72661 4.84966 5.11583 5.30809 5.35425 5.37462 5.39621 5.46724 5.58909 5.65577 5.78222 5.84272 5.85881 6.23063 6.31414 6.38844 6.49802 6.50756 6.57773 7.07260 7.10492 7.19568 7.31771 7.65539 7.80817 8.02236 8.26186 8.46087 8.67842 8.74830 9.43007 10.00602 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.032579 B = 0.004057 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.244473 B = 6900.651830 C = 7473.838210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.372 6.372 3 C 0.086 3.914 4 C -0.047 4.047 5 C -0.119 4.119 6 C -0.195 4.195 7 C 0.524 3.476 8 O -0.462 6.462 9 N -0.659 5.659 10 C 0.359 3.641 11 C -0.288 4.288 12 C 0.131 3.869 13 C -0.456 4.456 14 H 0.094 0.906 15 C 0.093 3.907 16 N -0.803 5.803 17 Si 0.906 3.094 18 H -0.262 1.262 19 H -0.286 1.286 20 H -0.252 1.252 21 C -0.291 4.291 22 C 0.133 3.867 23 N -0.550 5.550 24 H 0.047 0.953 25 H 0.080 0.920 26 H 0.031 0.969 27 H 0.041 0.959 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.129 0.871 33 H 0.408 0.592 34 H 0.110 0.890 35 H 0.286 0.714 36 H 0.111 0.889 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.136 -1.007 17.247 17.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.291 6.291 3 C 0.010 3.990 4 C -0.049 4.049 5 C -0.176 4.176 6 C -0.216 4.216 7 C 0.312 3.688 8 O -0.333 6.333 9 N -0.305 5.305 10 C 0.132 3.868 11 C -0.313 4.313 12 C 0.123 3.877 13 C -0.486 4.486 14 H 0.112 0.888 15 C -0.127 4.127 16 N -0.427 5.427 17 Si 0.731 3.269 18 H -0.187 1.187 19 H -0.213 1.213 20 H -0.176 1.176 21 C -0.314 4.314 22 C -0.021 4.021 23 N -0.269 5.269 24 H 0.066 0.934 25 H 0.099 0.901 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.105 0.895 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.147 0.853 33 H 0.243 0.757 34 H 0.128 0.872 35 H 0.097 0.903 36 H 0.129 0.871 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.013 -1.441 17.850 17.937 hybrid contribution 0.510 -0.174 -1.080 1.207 sum -0.503 -1.615 16.770 16.855 Atomic orbital electron populations 1.22639 0.81298 1.02245 0.99687 1.87892 1.19439 1.26422 1.95326 1.21683 0.89481 0.86609 1.01218 1.22210 0.94981 0.92890 0.94833 1.20922 1.00066 1.02383 0.94230 1.22633 1.00223 1.06344 0.92398 1.18631 0.87864 0.78547 0.83795 1.90847 1.13729 1.42486 1.86278 1.43413 1.10016 1.72369 1.04684 1.18123 0.89502 0.95157 0.83972 1.21360 0.99146 1.18884 0.91915 1.17678 0.90834 0.86370 0.92846 1.19340 1.16496 1.23227 0.89557 0.88833 1.26058 0.93408 0.98943 0.94334 1.69680 1.37023 1.36783 0.99231 0.86381 0.80656 0.81204 0.78669 1.18711 1.21251 1.17580 1.22116 0.95745 1.15531 0.98031 1.21900 0.98032 0.94434 0.87749 1.67339 1.04864 1.24062 1.30643 0.93431 0.90149 0.95016 0.94095 0.89531 0.90737 0.90809 0.90982 0.85315 0.75675 0.87216 0.90317 0.87071 0.85349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 11.01 101.05 1.11 1.60 16 2 O -0.37 -5.82 10.04 -52.26 -0.52 -6.34 16 3 C 0.09 1.19 5.03 36.01 0.18 1.38 16 4 C -0.05 -0.58 5.73 -101.16 -0.58 -1.16 16 5 C -0.12 -1.00 10.04 36.01 0.36 -0.63 16 6 C -0.19 -2.52 9.62 -37.82 -0.36 -2.88 16 7 C 0.52 9.30 7.53 -12.69 -0.10 9.20 16 8 O -0.46 -9.78 11.07 -11.76 -0.13 -9.91 16 9 N -0.66 -11.75 5.38 -12.58 -0.07 -11.81 16 10 C 0.36 8.03 7.41 -154.79 -1.15 6.88 16 11 C -0.29 -6.62 9.73 -38.47 -0.37 -7.00 16 12 C 0.13 3.30 4.89 -106.56 -0.52 2.78 16 13 C -0.46 -12.07 9.57 -37.65 -0.36 -12.43 16 14 H 0.09 2.58 8.06 -52.49 -0.42 2.15 16 15 C 0.09 2.38 5.36 -17.34 -0.09 2.29 16 16 N -0.80 -20.92 13.92 55.55 0.77 -20.14 16 17 Si 0.91 20.52 25.22 -169.99 -4.29 16.23 16 18 H -0.26 -5.75 6.57 56.52 0.37 -5.38 16 19 H -0.29 -6.18 7.11 56.52 0.40 -5.77 16 20 H -0.25 -5.99 7.11 56.52 0.40 -5.59 16 21 C -0.29 -7.04 7.52 -38.71 -0.29 -7.33 16 22 C 0.13 3.07 11.15 -17.68 -0.20 2.88 16 23 N -0.55 -13.24 7.85 -12.54 -0.10 -13.34 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.04 0.46 8.13 -51.93 -0.42 0.04 16 28 H 0.09 1.43 5.74 -51.93 -0.30 1.13 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 31 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 32 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.41 5.59 8.68 -40.82 -0.35 5.23 16 34 H 0.11 2.28 8.06 -52.49 -0.42 1.85 16 35 H 0.29 6.75 8.29 -40.82 -0.34 6.41 16 36 H 0.11 2.63 5.78 -52.49 -0.30 2.33 16 37 H 0.13 2.60 8.06 -52.49 -0.42 2.18 16 LS Contribution 316.49 15.07 4.77 4.77 Total: -1.00 -31.91 316.49 -6.70 -38.61 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -4.77 Total: 6.36 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -2.37 Total: -4.43 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 0.61 Total: -45.30 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.65 Total: -16.25 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.29 Total: 16.23 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.91 -6.70 -38.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844428507.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.174 kcal (2) G-P(sol) polarization free energy of solvation -31.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds