Wall clock time and date at job start Mon Mar 30 2020 20:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47181 * 2 1 4 4 C 1.50696 * 109.47233 * 120.00317 * 2 1 3 5 5 O 1.21279 * 120.00139 * 240.00117 * 4 2 1 6 6 N 1.34785 * 120.00032 * 59.99680 * 4 2 1 7 7 N 1.40096 * 119.99890 * 180.02562 * 6 4 2 8 8 C 1.34777 * 119.99853 * 180.27454 * 7 6 4 9 9 O 1.21609 * 120.00166 * 359.72681 * 8 7 6 10 10 C 1.47427 * 120.00038 * 179.72537 * 8 7 6 11 11 C 1.39231 * 120.28388 * 354.97767 * 10 8 7 12 12 C 1.38214 * 120.09259 * 180.02562 * 11 10 8 13 13 C 1.38823 * 120.68071 * 359.97438 * 12 11 10 14 14 C 1.37601 * 120.56743 * 359.97438 * 13 12 11 15 15 C 1.40707 * 119.88144 * 359.72311 * 14 13 12 16 16 C 1.40885 * 120.33083 * 180.27253 * 15 14 13 17 17 H 1.08003 * 120.00321 * 141.52987 * 16 15 14 18 18 C 1.40277 * 119.99874 * 321.53798 * 16 15 14 19 19 N 1.30631 * 119.99930 * 174.39765 * 18 16 15 20 20 Si 1.86803 * 120.00148 * 354.38856 * 18 16 15 21 21 H 1.48499 * 109.46572 * 89.37403 * 20 18 16 22 22 H 1.48502 * 109.47137 * 209.37141 * 20 18 16 23 23 H 1.48498 * 109.46901 * 329.37395 * 20 18 16 24 24 H 1.09004 * 109.46942 * 59.99868 * 1 2 3 25 25 H 1.09002 * 109.47021 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46792 * 299.99895 * 1 2 3 27 27 H 1.09004 * 109.47023 * 240.00307 * 2 1 3 28 28 H 1.09000 * 109.46741 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47230 * 300.00435 * 3 2 1 30 30 H 1.09004 * 109.46891 * 60.00226 * 3 2 1 31 31 H 0.96994 * 119.99493 * 0.02562 * 6 4 2 32 32 H 0.97004 * 120.00058 * 0.02562 * 7 6 4 33 33 H 1.07999 * 119.95343 * 359.97438 * 11 10 8 34 34 H 1.08005 * 119.65900 * 179.97438 * 12 11 10 35 35 H 1.08001 * 119.71819 * 179.97438 * 13 12 11 36 36 H 1.08003 * 120.05902 * 179.97438 * 14 13 12 37 37 H 0.97007 * 120.00163 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7296 -0.1211 2.0287 6 7 1.7067 -2.0009 1.4437 7 7 2.1733 -2.6612 2.5878 8 6 1.8523 -3.9531 2.7982 9 8 1.1535 -4.5442 1.9975 10 6 2.3482 -4.6497 3.9991 11 6 3.2325 -4.0125 4.8655 12 6 3.6954 -4.6695 5.9900 13 6 3.2876 -5.9665 6.2707 14 6 2.4137 -6.6219 5.4340 15 6 1.9226 -5.9732 4.2860 16 6 1.0231 -6.6333 3.4258 17 1 0.2082 -6.0869 2.9742 18 6 1.1856 -8.0002 3.1561 19 7 0.2915 -8.6371 2.4479 20 14 2.6808 -8.9098 3.8092 21 1 2.3798 -9.4522 5.1584 22 1 3.0209 -10.0266 2.8913 23 1 3.8303 -7.9737 3.8971 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.1494 -2.4722 0.8050 32 1 2.7304 -2.1896 3.2267 33 1 3.5577 -3.0038 4.6582 34 1 4.3815 -4.1687 6.6571 35 1 3.6594 -6.4653 7.1535 36 1 2.1022 -7.6310 5.6601 37 1 0.4041 -9.5823 2.2611 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864491489.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:44 Heat of formation + Delta-G solvation = -27.523685 kcal Electronic energy + Delta-G solvation = -20945.754437 eV Core-core repulsion = 17688.828147 eV Total energy + Delta-G solvation = -3256.926291 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.12786 -38.85847 -37.12600 -34.88291 -34.59975 -33.68687 -31.39513 -30.56696 -29.34592 -27.23597 -25.49149 -23.79397 -22.45168 -21.23496 -20.75363 -19.42712 -17.85001 -17.39252 -17.12540 -16.16434 -15.54595 -15.26546 -14.61175 -14.35067 -14.18218 -14.06854 -13.69093 -13.57036 -12.93759 -12.78711 -12.65684 -12.46939 -12.15091 -12.10505 -11.66344 -11.34785 -11.25601 -11.01826 -10.83680 -10.79846 -10.54731 -10.22376 -9.89879 -9.84937 -9.35063 -8.77976 -8.03487 -7.81834 -7.66552 -6.96178 -4.56346 1.94975 2.27501 2.52202 2.60753 3.04465 3.13448 3.24042 3.84057 3.90933 4.25352 4.50577 4.66458 4.77618 4.86997 5.21767 5.27073 5.42339 5.55730 5.64235 5.68854 5.74224 5.80386 5.94691 5.97905 6.08714 6.23549 6.40725 6.69177 6.96346 7.05774 7.12840 7.19219 7.29163 7.50541 7.64697 7.90632 8.12046 8.23964 8.39913 8.51244 8.72797 9.14505 10.01764 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.023790 B = 0.004799 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.668315 B = 5832.732644 C = 6754.880919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.104 4.104 3 C -0.131 4.131 4 C 0.510 3.490 5 O -0.550 6.550 6 N -0.515 5.515 7 N -0.544 5.544 8 C 0.563 3.437 9 O -0.525 6.525 10 C -0.243 4.243 11 C -0.041 4.041 12 C -0.248 4.248 13 C -0.063 4.063 14 C -0.223 4.223 15 C 0.121 3.879 16 C -0.396 4.396 17 H 0.115 0.885 18 C 0.079 3.921 19 N -0.794 5.794 20 Si 0.908 3.092 21 H -0.267 1.267 22 H -0.289 1.289 23 H -0.242 1.242 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.101 0.899 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.429 0.571 32 H 0.423 0.577 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.331 10.905 -3.101 11.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.127 4.127 3 C -0.189 4.189 4 C 0.295 3.705 5 O -0.427 6.427 6 N -0.261 5.261 7 N -0.297 5.297 8 C 0.357 3.643 9 O -0.401 6.401 10 C -0.249 4.249 11 C -0.060 4.060 12 C -0.267 4.267 13 C -0.082 4.082 14 C -0.242 4.242 15 C 0.116 3.884 16 C -0.423 4.423 17 H 0.133 0.867 18 C -0.141 4.141 19 N -0.417 5.417 20 Si 0.735 3.265 21 H -0.193 1.193 22 H -0.216 1.216 23 H -0.165 1.165 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.119 0.881 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.271 0.729 32 H 0.265 0.735 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.125 0.875 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.151 10.648 -3.283 11.348 hybrid contribution 0.610 -0.571 0.256 0.874 sum 2.761 10.077 -3.026 10.878 Atomic orbital electron populations 1.21854 0.92620 1.03040 1.03104 1.21234 0.97788 0.97858 0.95790 1.21612 1.01862 0.93188 1.02188 1.20897 0.80983 0.80100 0.88477 1.90689 1.38909 1.65810 1.47324 1.44846 1.52465 1.10262 1.18485 1.45326 1.56010 1.10976 1.17369 1.18617 0.80335 0.78382 0.86963 1.90783 1.38011 1.64460 1.46846 1.19126 1.09204 0.98854 0.97731 1.20839 0.94564 0.96900 0.93702 1.20326 1.08718 0.96646 1.00992 1.20782 0.95330 0.94574 0.97478 1.21196 1.05118 1.00674 0.97173 1.17493 0.89437 0.90303 0.91173 1.19952 1.09312 0.92924 1.20093 0.86745 1.26313 0.97370 0.97262 0.93192 1.69539 1.32617 1.11178 1.28407 0.86383 0.83001 0.78880 0.78284 1.19311 1.21597 1.16516 0.91136 0.91745 0.91830 0.88122 0.91860 0.91862 0.91814 0.72947 0.73478 0.88454 0.88180 0.88277 0.87454 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.09 37.16 0.34 -0.94 16 2 C -0.10 -1.04 3.26 -91.77 -0.30 -1.34 16 3 C -0.13 -1.22 8.48 37.16 0.32 -0.90 16 4 C 0.51 7.36 7.27 -10.98 -0.08 7.28 16 5 O -0.55 -9.62 15.82 5.56 0.09 -9.53 16 6 N -0.52 -8.19 6.15 31.22 0.19 -7.99 16 7 N -0.54 -10.12 6.21 30.43 0.19 -9.93 16 8 C 0.56 12.60 7.84 -12.52 -0.10 12.50 16 9 O -0.53 -13.29 13.52 5.27 0.07 -13.22 16 10 C -0.24 -5.59 5.92 -104.37 -0.62 -6.21 16 11 C -0.04 -0.82 9.52 -39.22 -0.37 -1.19 16 12 C -0.25 -4.78 10.03 -39.37 -0.39 -5.17 16 13 C -0.06 -1.27 10.01 -39.60 -0.40 -1.67 16 14 C -0.22 -5.10 6.94 -38.88 -0.27 -5.37 16 15 C 0.12 3.03 5.04 -106.54 -0.54 2.49 16 16 C -0.40 -10.78 8.07 -37.81 -0.31 -11.08 16 17 H 0.11 3.43 6.38 -52.48 -0.33 3.09 16 18 C 0.08 2.06 5.51 -17.30 -0.10 1.96 16 19 N -0.79 -21.12 13.92 55.56 0.77 -20.34 16 20 Si 0.91 20.28 24.48 -169.99 -4.16 16.12 16 21 H -0.27 -5.65 6.70 56.52 0.38 -5.27 16 22 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.24 -5.54 6.67 56.52 0.38 -5.16 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.57 7.57 -51.93 -0.39 0.17 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 31 H 0.43 6.39 7.42 -182.61 -1.35 5.03 16 32 H 0.42 7.40 6.06 -182.60 -1.11 6.30 16 33 H 0.10 1.65 6.43 -52.49 -0.34 1.31 16 34 H 0.10 1.65 8.06 -52.48 -0.42 1.22 16 35 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 36 H 0.11 2.41 4.87 -52.48 -0.26 2.15 16 37 H 0.29 6.88 8.29 -40.82 -0.34 6.54 16 LS Contribution 309.45 15.07 4.66 4.66 Total: -1.00 -30.66 309.45 -7.34 -38.00 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -6.34 Total: 11.88 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -2.81 Total: -9.64 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 1.15 Total: -38.27 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: 0.16 Total: -22.75 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.16 Total: 16.12 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.66 -7.34 -38.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864491489.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.476 kcal (2) G-P(sol) polarization free energy of solvation -30.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds