Wall clock time and date at job start Mon Mar 30 2020 20:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47181 * 2 1 4 4 C 1.50696 * 109.47233 * 120.00317 * 2 1 3 5 5 O 1.21279 * 120.00139 * 240.00117 * 4 2 1 6 6 N 1.34785 * 120.00032 * 59.99680 * 4 2 1 7 7 N 1.40096 * 119.99890 * 180.02562 * 6 4 2 8 8 C 1.34777 * 119.99853 * 180.27454 * 7 6 4 9 9 O 1.21609 * 120.00166 * 359.72681 * 8 7 6 10 10 C 1.47427 * 120.00038 * 179.72537 * 8 7 6 11 11 C 1.39231 * 120.28388 * 354.97767 * 10 8 7 12 12 C 1.38214 * 120.09259 * 180.02562 * 11 10 8 13 13 C 1.38823 * 120.68071 * 359.97438 * 12 11 10 14 14 C 1.37601 * 120.56743 * 359.97438 * 13 12 11 15 15 C 1.40707 * 119.88144 * 359.72311 * 14 13 12 16 16 C 1.40885 * 120.33083 * 180.27253 * 15 14 13 17 17 H 1.08003 * 120.00321 * 141.52987 * 16 15 14 18 18 C 1.40277 * 119.99874 * 321.53798 * 16 15 14 19 19 N 1.30631 * 119.99930 * 174.39765 * 18 16 15 20 20 Si 1.86803 * 120.00148 * 354.38856 * 18 16 15 21 21 H 1.48499 * 109.46572 * 89.37403 * 20 18 16 22 22 H 1.48502 * 109.47137 * 209.37141 * 20 18 16 23 23 H 1.48498 * 109.46901 * 329.37395 * 20 18 16 24 24 H 1.09004 * 109.46942 * 59.99868 * 1 2 3 25 25 H 1.09002 * 109.47021 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46792 * 299.99895 * 1 2 3 27 27 H 1.09004 * 109.47023 * 240.00307 * 2 1 3 28 28 H 1.09000 * 109.46741 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47230 * 300.00435 * 3 2 1 30 30 H 1.09004 * 109.46891 * 60.00226 * 3 2 1 31 31 H 0.96994 * 119.99493 * 0.02562 * 6 4 2 32 32 H 0.97004 * 120.00058 * 0.02562 * 7 6 4 33 33 H 1.07999 * 119.95343 * 359.97438 * 11 10 8 34 34 H 1.08005 * 119.65900 * 179.97438 * 12 11 10 35 35 H 1.08001 * 119.71819 * 179.97438 * 13 12 11 36 36 H 1.08003 * 120.05902 * 179.97438 * 14 13 12 37 37 H 0.97007 * 120.00163 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7296 -0.1211 2.0287 6 7 1.7067 -2.0009 1.4437 7 7 2.1733 -2.6612 2.5878 8 6 1.8523 -3.9531 2.7982 9 8 1.1535 -4.5442 1.9975 10 6 2.3482 -4.6497 3.9991 11 6 3.2325 -4.0125 4.8655 12 6 3.6954 -4.6695 5.9900 13 6 3.2876 -5.9665 6.2707 14 6 2.4137 -6.6219 5.4340 15 6 1.9226 -5.9732 4.2860 16 6 1.0231 -6.6333 3.4258 17 1 0.2082 -6.0869 2.9742 18 6 1.1856 -8.0002 3.1561 19 7 0.2915 -8.6371 2.4479 20 14 2.6808 -8.9098 3.8092 21 1 2.3798 -9.4522 5.1584 22 1 3.0209 -10.0266 2.8913 23 1 3.8303 -7.9737 3.8971 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.1494 -2.4722 0.8050 32 1 2.7304 -2.1896 3.2267 33 1 3.5577 -3.0038 4.6582 34 1 4.3815 -4.1687 6.6571 35 1 3.6594 -6.4653 7.1535 36 1 2.1022 -7.6310 5.6601 37 1 0.4041 -9.5823 2.2611 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864491489.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:43 Heat of formation + Delta-G solvation = -49.266360 kcal Electronic energy + Delta-G solvation = -20946.697270 eV Core-core repulsion = 17688.828147 eV Total energy + Delta-G solvation = -3257.869124 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.52387 -40.43328 -38.81576 -36.41732 -35.57680 -35.48251 -32.97400 -32.35090 -30.89277 -27.97814 -27.27149 -25.04168 -24.00204 -22.93264 -22.16464 -20.80926 -19.55565 -18.80367 -18.65796 -17.61536 -17.09203 -16.63192 -16.14610 -15.84197 -15.79395 -15.43905 -15.32840 -14.79207 -14.56478 -14.36767 -13.88935 -13.75787 -13.35472 -13.21909 -12.90750 -12.71690 -12.60424 -12.35887 -12.26135 -12.09947 -12.04272 -12.00661 -11.62836 -11.14340 -11.09875 -10.57196 -9.70712 -9.48790 -9.29397 -8.82792 -6.51026 0.23092 0.79517 0.89939 1.25661 1.35966 1.42237 1.47544 2.09949 2.14520 2.67670 3.06536 3.45604 3.58983 3.93835 4.00431 4.11554 4.17527 4.39718 4.44097 4.64889 4.75948 4.77317 4.84646 4.93811 4.94729 5.05283 5.26761 5.27943 5.33907 5.35821 5.59686 5.67667 5.71672 5.86152 5.94945 6.20300 6.41704 6.56487 6.71036 6.77312 6.93742 7.49622 8.22123 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.023790 B = 0.004799 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.668315 B = 5832.732644 C = 6754.880919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.129 4.129 4 C 0.510 3.490 5 O -0.579 6.579 6 N -0.518 5.518 7 N -0.535 5.535 8 C 0.560 3.440 9 O -0.563 6.563 10 C -0.259 4.259 11 C -0.044 4.044 12 C -0.225 4.225 13 C -0.057 4.057 14 C -0.242 4.242 15 C 0.107 3.893 16 C -0.441 4.441 17 H 0.066 0.934 18 C 0.038 3.962 19 N -0.848 5.848 20 Si 0.966 3.034 21 H -0.245 1.245 22 H -0.282 1.282 23 H -0.249 1.249 24 H 0.098 0.902 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.125 0.875 28 H 0.053 0.947 29 H 0.094 0.906 30 H 0.050 0.950 31 H 0.432 0.568 32 H 0.430 0.570 33 H 0.131 0.869 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.108 0.892 37 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.748 12.674 -1.788 13.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.186 4.186 4 C 0.298 3.702 5 O -0.458 6.458 6 N -0.265 5.265 7 N -0.285 5.285 8 C 0.353 3.647 9 O -0.442 6.442 10 C -0.265 4.265 11 C -0.062 4.062 12 C -0.244 4.244 13 C -0.075 4.075 14 C -0.261 4.261 15 C 0.102 3.898 16 C -0.470 4.470 17 H 0.084 0.916 18 C -0.176 4.176 19 N -0.475 5.475 20 Si 0.788 3.212 21 H -0.170 1.170 22 H -0.209 1.209 23 H -0.173 1.173 24 H 0.117 0.883 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.143 0.857 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.070 0.930 31 H 0.275 0.725 32 H 0.273 0.727 33 H 0.148 0.852 34 H 0.163 0.837 35 H 0.159 0.841 36 H 0.126 0.874 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.576 12.465 -1.953 13.422 hybrid contribution -0.017 -0.758 -0.039 0.759 sum 4.560 11.707 -1.991 12.721 Atomic orbital electron populations 1.21874 0.91375 1.03061 1.04117 1.21381 0.98660 0.97871 0.94013 1.21637 1.01252 0.92616 1.03128 1.21910 0.79853 0.79119 0.89306 1.90670 1.40212 1.66199 1.48706 1.45169 1.52919 1.10762 1.17634 1.44996 1.55074 1.10086 1.18378 1.18655 0.79966 0.79332 0.86709 1.90780 1.39669 1.65721 1.48024 1.19488 1.09747 0.98654 0.98616 1.21211 0.93346 0.98381 0.93289 1.20949 1.07108 0.96067 1.00262 1.21292 0.93550 0.94870 0.97795 1.21323 1.06414 1.01217 0.97131 1.17733 0.89212 0.91386 0.91436 1.19715 1.10500 0.93822 1.22929 0.91610 1.27024 0.99833 0.97558 0.93225 1.69595 1.34777 1.11847 1.31244 0.85524 0.79168 0.77620 0.78850 1.16971 1.20852 1.17270 0.88289 0.92272 0.92677 0.85688 0.92828 0.88753 0.93044 0.72535 0.72681 0.85175 0.83737 0.84093 0.87389 0.89589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.09 71.98 0.65 -1.59 16 2 C -0.10 -1.73 3.26 -11.54 -0.04 -1.77 16 3 C -0.13 -2.10 8.48 71.98 0.61 -1.49 16 4 C 0.51 14.21 7.27 87.65 0.64 14.84 16 5 O -0.58 -19.65 15.82 -3.02 -0.05 -19.70 16 6 N -0.52 -16.38 6.15 -173.53 -1.07 -17.44 16 7 N -0.53 -19.78 6.21 -175.88 -1.09 -20.87 16 8 C 0.56 25.71 7.84 86.66 0.68 26.39 16 9 O -0.56 -30.28 13.52 -4.06 -0.05 -30.34 16 10 C -0.26 -11.89 5.92 -19.70 -0.12 -12.00 16 11 C -0.04 -1.60 9.52 22.50 0.21 -1.38 16 12 C -0.23 -7.50 10.03 22.40 0.22 -7.28 16 13 C -0.06 -2.04 10.01 22.26 0.22 -1.82 16 14 C -0.24 -10.72 6.94 22.72 0.16 -10.56 16 15 C 0.11 5.43 5.04 -21.11 -0.11 5.32 16 16 C -0.44 -25.62 8.07 23.41 0.19 -25.43 16 17 H 0.07 4.34 6.38 -2.91 -0.02 4.32 16 18 C 0.04 2.07 5.51 85.37 0.47 2.54 16 19 N -0.85 -48.21 13.92 21.88 0.30 -47.90 16 20 Si 0.97 42.45 24.48 68.60 1.68 44.13 16 21 H -0.25 -9.75 6.70 99.48 0.67 -9.08 16 22 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.25 -11.03 6.67 99.48 0.66 -10.37 16 24 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.06 0.98 7.57 -2.39 -0.02 0.96 16 26 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.13 1.70 8.14 -2.38 -0.02 1.68 16 28 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 29 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.05 0.97 8.10 -2.38 -0.02 0.95 16 31 H 0.43 13.08 7.42 -213.33 -1.58 11.50 16 32 H 0.43 14.48 6.06 -213.32 -1.29 13.19 16 33 H 0.13 3.88 6.43 -2.91 -0.02 3.86 16 34 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 35 H 0.14 3.93 8.06 -2.91 -0.02 3.90 16 36 H 0.11 4.71 4.87 -2.91 -0.01 4.70 16 37 H 0.29 14.92 8.29 -92.70 -0.77 14.15 16 Total: -1.00 -71.95 309.45 1.68 -70.26 By element: Atomic # 1 Polarization: 37.93 SS G_CDS: -1.84 Total: 36.09 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 3.80 Total: -14.23 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -1.86 Total: -86.22 kcal Atomic # 8 Polarization: -49.94 SS G_CDS: -0.10 Total: -50.04 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 1.68 Total: 44.13 kcal Total: -71.95 1.68 -70.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864491489.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.998 kcal (2) G-P(sol) polarization free energy of solvation -71.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds