Wall clock time and date at job start Mon Mar 30 2020 20:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47206 * 2 1 4 4 H 1.08998 * 109.47859 * 177.96661 * 3 2 1 5 5 C 1.50702 * 109.47015 * 57.96871 * 3 2 1 6 6 H 1.08002 * 119.99748 * 240.00168 * 5 3 2 7 7 C 1.37879 * 120.00116 * 60.00413 * 5 3 2 8 8 N 1.31509 * 119.99549 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99786 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47374 * 90.00138 * 9 7 5 11 11 H 1.48507 * 109.46611 * 209.99736 * 9 7 5 12 12 H 1.48500 * 109.47350 * 329.99273 * 9 7 5 13 13 N 1.46902 * 109.47450 * 297.97237 * 3 2 1 14 14 C 1.46904 * 110.99458 * 273.74761 * 13 3 2 15 15 C 1.50706 * 109.46774 * 174.87944 * 14 13 3 16 16 C 1.34055 * 124.93717 * 90.00184 * 15 14 13 17 17 C 1.46573 * 106.17013 * 180.23986 * 16 15 14 18 18 C 1.40644 * 105.45206 * 359.61600 * 17 16 15 19 19 C 1.39335 * 118.05779 * 180.19587 * 18 17 16 20 20 C 1.37687 * 119.03910 * 0.26987 * 19 18 17 21 21 N 1.32328 * 121.58418 * 0.02794 * 20 19 18 22 22 C 1.32208 * 122.02184 * 359.97177 * 21 20 19 23 23 O 1.35619 * 120.01146 * 179.97438 * 22 21 20 24 24 O 1.34364 * 107.37852 * 0.38565 * 18 17 16 25 25 H 1.08997 * 109.46919 * 294.44917 * 1 2 3 26 26 H 1.08997 * 109.47287 * 54.45029 * 1 2 3 27 27 H 1.09001 * 109.47134 * 174.45265 * 1 2 3 28 28 H 1.09003 * 109.47414 * 240.00278 * 2 1 3 29 29 H 1.09003 * 109.47132 * 119.99953 * 2 1 3 30 30 H 0.97001 * 119.99274 * 180.02562 * 8 7 5 31 31 H 1.00890 * 111.00610 * 149.79131 * 13 3 2 32 32 H 1.09000 * 109.47121 * 54.88754 * 14 13 3 33 33 H 1.08993 * 109.47472 * 294.87803 * 14 13 3 34 34 H 1.08004 * 126.91402 * 359.97362 * 16 15 14 35 35 H 1.07993 * 120.48442 * 180.24968 * 19 18 17 36 36 H 1.08000 * 119.20714 * 179.97438 * 20 19 18 37 37 H 0.96698 * 113.99902 * 89.99928 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4428 0.0365 5 6 1.4970 2.1672 1.2045 6 1 0.8799 3.0440 1.0743 7 6 1.7880 1.7111 2.4727 8 7 2.5390 0.6433 2.6311 9 14 1.1142 2.6092 3.9657 10 1 -0.2066 2.0382 4.3325 11 1 2.0549 2.4519 5.1040 12 1 0.9590 4.0514 3.6476 13 7 1.5908 2.1207 -1.2232 14 6 2.5280 1.8858 -2.3298 15 6 1.9731 2.4888 -3.5945 16 6 2.1982 3.7434 -4.0099 17 6 1.4646 3.8940 -5.2699 18 6 0.8506 2.6492 -5.4971 19 6 0.0778 2.4998 -6.6468 20 6 -0.0487 3.5648 -7.5102 21 7 0.5456 4.7232 -7.2736 22 6 1.2906 4.9225 -6.1997 23 8 1.8815 6.1263 -5.9979 24 8 1.1796 1.8462 -4.4713 25 1 -0.3633 0.4253 0.9355 26 1 -0.3634 0.5975 -0.8361 27 1 -0.3633 -1.0229 -0.0993 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.7434 0.3222 3.5233 31 1 1.4614 3.1083 -1.0624 32 1 2.6651 0.8134 -2.4683 33 1 3.4875 2.3478 -2.0976 34 1 2.7959 4.4936 -3.5136 35 1 -0.4146 1.5621 -6.8579 36 1 -0.6468 3.4519 -8.4024 37 1 1.3402 6.7510 -5.4961 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877363871.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:52 Heat of formation + Delta-G solvation = -1.085586 kcal Electronic energy + Delta-G solvation = -20734.493135 eV Core-core repulsion = 17478.713286 eV Total energy + Delta-G solvation = -3255.779849 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.68727 -39.55915 -37.07693 -36.50937 -33.46565 -32.45317 -31.52167 -30.78758 -29.22018 -26.77674 -24.83818 -23.65926 -23.21188 -22.42878 -21.21503 -19.15998 -18.93057 -17.62383 -17.16339 -16.39190 -16.12936 -15.76539 -15.11459 -14.92509 -14.53462 -14.27670 -13.71850 -13.57934 -13.18312 -12.94471 -12.75476 -12.34651 -11.92575 -11.91006 -11.90204 -11.34187 -10.98913 -10.83238 -10.48444 -10.30837 -10.13443 -9.87651 -9.80727 -9.48088 -9.42309 -8.90251 -8.57394 -8.21253 -7.48838 -6.10892 -4.16888 0.53277 1.11514 2.26121 2.55485 3.24609 3.27632 3.31839 3.34021 3.62244 4.22318 4.33798 4.48979 4.66681 4.94032 5.05517 5.19560 5.21683 5.31869 5.52787 5.61196 5.71296 5.77811 5.92176 6.17622 6.29925 6.44534 6.63570 6.77053 7.01748 7.12944 7.16920 7.31400 7.38304 7.63651 7.67450 7.72255 7.73504 8.10258 8.21499 8.47503 8.89761 9.48287 10.95149 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.028480 B = 0.003781 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.908417 B = 7402.698214 C = 7882.806464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 C 0.217 3.783 4 H 0.005 0.995 5 C -0.516 4.516 6 H 0.060 0.940 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.895 3.105 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.681 5.681 14 C 0.125 3.875 15 C 0.071 3.929 16 C -0.197 4.197 17 C -0.192 4.192 18 C 0.098 3.902 19 C -0.165 4.165 20 C 0.124 3.876 21 N -0.513 5.513 22 C 0.364 3.636 23 O -0.477 6.477 24 O -0.175 6.175 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.014 0.986 28 H 0.011 0.989 29 H 0.088 0.912 30 H 0.262 0.738 31 H 0.336 0.664 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.163 0.837 35 H 0.147 0.853 36 H 0.171 0.829 37 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.644 4.557 -15.026 15.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.142 4.142 3 C 0.110 3.890 4 H 0.023 0.977 5 C -0.554 4.554 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.526 5.526 9 Si 0.723 3.277 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.313 5.313 14 C -0.004 4.004 15 C 0.023 3.977 16 C -0.218 4.218 17 C -0.196 4.196 18 C 0.043 3.957 19 C -0.185 4.185 20 C -0.027 4.027 21 N -0.235 5.235 22 C 0.179 3.821 23 O -0.285 6.285 24 O -0.073 6.073 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.033 0.967 28 H 0.030 0.970 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.154 0.846 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.180 0.820 35 H 0.164 0.836 36 H 0.188 0.812 37 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -2.699 4.060 -15.881 16.613 hybrid contribution 0.169 0.671 1.942 2.061 sum -2.530 4.731 -13.940 14.936 Atomic orbital electron populations 1.21440 0.97403 0.97289 1.01592 1.21454 0.95252 0.97977 0.99508 1.19187 0.93604 0.91727 0.84462 0.97698 1.21126 1.32003 1.12159 0.90160 0.92189 1.24868 0.94947 0.94996 0.98885 1.69878 1.37125 1.22985 1.22584 0.86547 0.78828 0.80060 0.82291 1.20583 1.21259 1.19934 1.60711 1.46643 1.16896 1.07027 1.20592 0.93675 1.01301 0.84869 1.22906 0.91498 0.91511 0.91753 1.22113 1.06392 0.97390 0.95913 1.20894 1.04344 0.96158 0.98234 1.19703 0.97366 0.88531 0.90110 1.21008 1.02500 1.02451 0.92573 1.22195 0.96058 0.86141 0.98275 1.67266 1.10068 1.25670 1.20471 1.18507 0.89899 0.85814 0.87869 1.84719 1.43237 1.22857 1.77665 1.84019 1.55794 1.39611 1.27881 0.92888 0.93495 0.96727 0.97040 0.89408 0.92823 0.84595 0.89320 0.91936 0.81984 0.83554 0.81215 0.73935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.64 9.46 37.16 0.35 -2.29 16 2 C -0.10 -2.40 5.58 -26.73 -0.15 -2.55 16 3 C 0.22 5.06 2.30 -68.86 -0.16 4.90 16 4 H 0.01 0.14 7.84 -51.93 -0.41 -0.27 16 5 C -0.52 -13.17 7.34 -34.44 -0.25 -13.42 16 6 H 0.06 1.52 7.60 -52.49 -0.40 1.13 16 7 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -24.12 11.34 55.43 0.63 -23.50 16 9 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 N -0.68 -13.34 5.50 -109.22 -0.60 -13.94 16 14 C 0.13 2.06 5.95 -4.97 -0.03 2.04 16 15 C 0.07 1.11 6.79 -35.78 -0.24 0.87 16 16 C -0.20 -2.81 11.00 -37.69 -0.41 -3.23 16 17 C -0.19 -2.77 6.38 -105.07 -0.67 -3.44 16 18 C 0.10 1.42 7.49 -38.27 -0.29 1.13 16 19 C -0.16 -1.85 10.13 -39.37 -0.40 -2.25 16 20 C 0.12 1.30 11.13 -17.54 -0.20 1.11 16 21 N -0.51 -6.72 10.38 -13.15 -0.14 -6.86 16 22 C 0.36 4.93 7.80 -16.83 -0.13 4.80 16 23 O -0.48 -5.60 13.57 -18.55 -0.25 -5.85 16 24 O -0.17 -2.81 10.57 4.78 0.05 -2.76 16 25 H 0.05 1.25 7.37 -51.93 -0.38 0.87 16 26 H 0.05 1.01 7.50 -51.93 -0.39 0.62 16 27 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.01 0.24 7.43 -51.93 -0.39 -0.15 16 29 H 0.09 2.27 6.13 -51.93 -0.32 1.95 16 30 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.34 6.44 8.24 -39.30 -0.32 6.12 16 32 H 0.09 1.49 7.39 -51.93 -0.38 1.11 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.16 2.00 8.06 -52.48 -0.42 1.58 16 35 H 0.15 1.24 8.06 -52.49 -0.42 0.81 16 36 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.40 2.72 9.06 45.56 0.41 3.13 16 LS Contribution 316.19 15.07 4.76 4.76 Total: -1.00 -29.83 316.19 -7.06 -36.89 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -3.83 Total: 6.53 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -2.67 Total: -10.71 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: -0.11 Total: -44.30 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -0.20 Total: -8.61 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.83 -7.06 -36.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877363871.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.809 kcal (2) G-P(sol) polarization free energy of solvation -29.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds