Wall clock time and date at job start Mon Mar 30 2020 20:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47206 * 2 1 4 4 H 1.08998 * 109.47859 * 177.96661 * 3 2 1 5 5 C 1.50702 * 109.47015 * 57.96871 * 3 2 1 6 6 H 1.08002 * 119.99748 * 240.00168 * 5 3 2 7 7 C 1.37879 * 120.00116 * 60.00413 * 5 3 2 8 8 N 1.31509 * 119.99549 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99786 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47374 * 90.00138 * 9 7 5 11 11 H 1.48507 * 109.46611 * 209.99736 * 9 7 5 12 12 H 1.48500 * 109.47350 * 329.99273 * 9 7 5 13 13 N 1.46902 * 109.47450 * 297.97237 * 3 2 1 14 14 C 1.46904 * 110.99458 * 273.74761 * 13 3 2 15 15 C 1.50706 * 109.46774 * 174.87944 * 14 13 3 16 16 C 1.34055 * 124.93717 * 90.00184 * 15 14 13 17 17 C 1.46573 * 106.17013 * 180.23986 * 16 15 14 18 18 C 1.40644 * 105.45206 * 359.61600 * 17 16 15 19 19 C 1.39335 * 118.05779 * 180.19587 * 18 17 16 20 20 C 1.37687 * 119.03910 * 0.26987 * 19 18 17 21 21 N 1.32328 * 121.58418 * 0.02794 * 20 19 18 22 22 C 1.32208 * 122.02184 * 359.97177 * 21 20 19 23 23 O 1.35619 * 120.01146 * 179.97438 * 22 21 20 24 24 O 1.34364 * 107.37852 * 0.38565 * 18 17 16 25 25 H 1.08997 * 109.46919 * 294.44917 * 1 2 3 26 26 H 1.08997 * 109.47287 * 54.45029 * 1 2 3 27 27 H 1.09001 * 109.47134 * 174.45265 * 1 2 3 28 28 H 1.09003 * 109.47414 * 240.00278 * 2 1 3 29 29 H 1.09003 * 109.47132 * 119.99953 * 2 1 3 30 30 H 0.97001 * 119.99274 * 180.02562 * 8 7 5 31 31 H 1.00890 * 111.00610 * 149.79131 * 13 3 2 32 32 H 1.09000 * 109.47121 * 54.88754 * 14 13 3 33 33 H 1.08993 * 109.47472 * 294.87803 * 14 13 3 34 34 H 1.08004 * 126.91402 * 359.97362 * 16 15 14 35 35 H 1.07993 * 120.48442 * 180.24968 * 19 18 17 36 36 H 1.08000 * 119.20714 * 179.97438 * 20 19 18 37 37 H 0.96698 * 113.99902 * 89.99928 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4428 0.0365 5 6 1.4970 2.1672 1.2045 6 1 0.8799 3.0440 1.0743 7 6 1.7880 1.7111 2.4727 8 7 2.5390 0.6433 2.6311 9 14 1.1142 2.6092 3.9657 10 1 -0.2066 2.0382 4.3325 11 1 2.0549 2.4519 5.1040 12 1 0.9590 4.0514 3.6476 13 7 1.5908 2.1207 -1.2232 14 6 2.5280 1.8858 -2.3298 15 6 1.9731 2.4888 -3.5945 16 6 2.1982 3.7434 -4.0099 17 6 1.4646 3.8940 -5.2699 18 6 0.8506 2.6492 -5.4971 19 6 0.0778 2.4998 -6.6468 20 6 -0.0487 3.5648 -7.5102 21 7 0.5456 4.7232 -7.2736 22 6 1.2906 4.9225 -6.1997 23 8 1.8815 6.1263 -5.9979 24 8 1.1796 1.8462 -4.4713 25 1 -0.3633 0.4253 0.9355 26 1 -0.3634 0.5975 -0.8361 27 1 -0.3633 -1.0229 -0.0993 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.7434 0.3222 3.5233 31 1 1.4614 3.1083 -1.0624 32 1 2.6651 0.8134 -2.4683 33 1 3.4875 2.3478 -2.0976 34 1 2.7959 4.4936 -3.5136 35 1 -0.4146 1.5621 -6.8579 36 1 -0.6468 3.4519 -8.4024 37 1 1.3402 6.7510 -5.4961 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877363871.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:51 Heat of formation + Delta-G solvation = -23.701022 kcal Electronic energy + Delta-G solvation = -20735.473814 eV Core-core repulsion = 17478.713286 eV Total energy + Delta-G solvation = -3256.760528 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.75270 -40.52165 -38.28399 -37.89034 -35.04058 -33.73355 -32.92852 -32.13568 -30.47805 -28.41177 -26.33052 -25.07952 -24.63548 -23.47578 -22.32642 -20.98595 -19.88758 -18.88028 -18.36445 -17.71787 -17.45542 -16.86789 -16.65870 -15.99100 -15.89145 -15.69650 -15.24543 -15.00367 -14.41347 -14.28714 -13.91149 -13.88428 -13.70364 -13.16987 -12.87701 -12.79270 -12.73532 -12.51234 -12.39710 -11.97602 -11.69294 -11.36547 -11.25375 -10.82158 -10.75477 -10.54905 -10.45342 -9.28591 -9.08306 -8.09928 -6.21492 -0.42263 0.11744 1.15504 1.43100 1.45467 1.49573 1.53682 2.41374 2.43398 2.69147 3.16281 3.19966 3.47350 3.72652 3.77651 3.97534 4.19188 4.21006 4.42789 4.52342 4.60208 4.64151 4.70079 4.79360 4.90931 4.93434 5.19961 5.28152 5.33032 5.36927 5.53941 5.71037 5.78580 5.86063 5.94856 6.26285 6.40253 6.54053 6.70857 6.82365 6.98022 7.47062 8.95232 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.028480 B = 0.003781 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.908417 B = 7402.698214 C = 7882.806464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.101 4.101 3 C 0.223 3.777 4 H -0.021 1.021 5 C -0.524 4.524 6 H 0.058 0.942 7 C 0.021 3.979 8 N -0.914 5.914 9 Si 0.952 3.048 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.268 1.268 13 N -0.680 5.680 14 C 0.132 3.868 15 C 0.050 3.950 16 C -0.184 4.184 17 C -0.215 4.215 18 C 0.080 3.920 19 C -0.164 4.164 20 C 0.135 3.865 21 N -0.529 5.529 22 C 0.360 3.640 23 O -0.485 6.485 24 O -0.193 6.193 25 H 0.031 0.969 26 H 0.050 0.950 27 H 0.033 0.967 28 H 0.023 0.977 29 H 0.060 0.940 30 H 0.261 0.739 31 H 0.338 0.662 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.177 0.823 35 H 0.175 0.825 36 H 0.214 0.786 37 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.757 5.359 -16.548 17.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.139 4.139 3 C 0.115 3.885 4 H -0.003 1.003 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.179 4.179 8 N -0.554 5.554 9 Si 0.778 3.222 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.192 1.192 13 N -0.312 5.312 14 C 0.003 3.997 15 C 0.002 3.998 16 C -0.205 4.205 17 C -0.219 4.219 18 C 0.025 3.975 19 C -0.184 4.184 20 C -0.016 4.016 21 N -0.251 5.251 22 C 0.176 3.824 23 O -0.296 6.296 24 O -0.092 6.092 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.042 0.958 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.156 0.844 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.195 0.805 35 H 0.193 0.807 36 H 0.230 0.770 37 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -3.821 4.891 -17.412 18.485 hybrid contribution 0.491 0.471 2.254 2.354 sum -3.330 5.363 -15.158 16.420 Atomic orbital electron populations 1.21304 0.96321 0.98401 1.00507 1.21348 0.96109 0.97761 0.98701 1.18950 0.91865 0.92076 0.85577 1.00343 1.21402 1.31597 1.12105 0.91151 0.92380 1.25559 0.95289 0.95667 1.01381 1.70002 1.38250 1.24187 1.22932 0.85646 0.78016 0.79255 0.79257 1.20517 1.21221 1.19232 1.60572 1.47557 1.16760 1.06264 1.20467 0.93601 1.01216 0.84439 1.22585 0.93186 0.92054 0.91963 1.22333 1.05435 0.97015 0.95732 1.21039 1.05322 0.96840 0.98714 1.20253 0.98117 0.88485 0.90645 1.21449 1.01706 1.03965 0.91301 1.22963 0.94820 0.84859 0.98916 1.67388 1.10476 1.26951 1.20289 1.18620 0.89806 0.86158 0.87849 1.84664 1.44030 1.22754 1.78103 1.83960 1.56326 1.40364 1.28571 0.94960 0.93116 0.94787 0.95827 0.92149 0.92975 0.84378 0.89915 0.90829 0.80534 0.80710 0.76981 0.71651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.71 9.46 71.98 0.68 -4.03 16 2 C -0.10 -4.71 5.58 30.59 0.17 -4.54 16 3 C 0.22 10.54 2.30 44.17 0.10 10.65 16 4 H -0.02 -1.09 7.84 -2.39 -0.02 -1.10 16 5 C -0.52 -26.93 7.34 25.60 0.19 -26.74 16 6 H 0.06 2.95 7.60 -2.91 -0.02 2.92 16 7 C 0.02 1.09 5.30 84.66 0.45 1.54 16 8 N -0.91 -50.53 11.34 21.45 0.24 -50.28 16 9 Si 0.95 42.02 29.54 68.60 2.03 44.04 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 13 N -0.68 -26.67 5.50 -499.45 -2.75 -29.42 16 14 C 0.13 4.36 5.95 85.56 0.51 4.87 16 15 C 0.05 1.53 6.79 24.73 0.17 1.70 16 16 C -0.18 -5.13 11.00 23.49 0.26 -4.87 16 17 C -0.21 -5.96 6.38 -20.16 -0.13 -6.09 16 18 C 0.08 2.21 7.49 23.12 0.17 2.39 16 19 C -0.16 -3.25 10.13 22.40 0.23 -3.03 16 20 C 0.13 2.39 11.13 84.49 0.94 3.33 16 21 N -0.53 -12.60 10.38 -308.45 -3.20 -15.80 16 22 C 0.36 9.19 7.80 85.00 0.66 9.86 16 23 O -0.49 -10.62 13.57 -89.31 -1.21 -11.84 16 24 O -0.19 -6.12 10.57 -5.83 -0.06 -6.18 16 25 H 0.03 1.51 7.37 -2.39 -0.02 1.49 16 26 H 0.05 2.14 7.50 -2.39 -0.02 2.13 16 27 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.02 1.01 7.43 -2.39 -0.02 0.99 16 29 H 0.06 3.18 6.13 -2.39 -0.01 3.16 16 30 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 31 H 0.34 12.94 8.24 -89.70 -0.74 12.20 16 32 H 0.08 2.80 7.39 -2.39 -0.02 2.79 16 33 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.18 4.18 8.06 -2.91 -0.02 4.16 16 35 H 0.18 2.36 8.06 -2.91 -0.02 2.34 16 36 H 0.21 1.80 8.06 -2.91 -0.02 1.78 16 37 H 0.42 5.03 9.06 -74.06 -0.67 4.36 16 Total: -1.00 -63.86 316.19 -0.84 -64.71 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -0.30 Total: 19.74 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: 4.40 Total: -14.97 kcal Atomic # 7 Polarization: -89.80 SS G_CDS: -5.70 Total: -95.50 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -1.27 Total: -18.02 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -63.86 -0.84 -64.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877363871.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.007 kcal (2) G-P(sol) polarization free energy of solvation -63.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds