Wall clock time and date at job start Mon Mar 30 2020 20:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 119.99668 * 2 1 4 4 C 1.53009 * 109.46595 * 239.99881 * 3 2 1 5 5 O 1.42902 * 109.47522 * 359.97438 * 3 2 1 6 6 C 1.52996 * 109.46999 * 119.99907 * 3 2 1 7 7 C 1.50701 * 109.46837 * 179.97438 * 6 3 2 8 8 O 1.21272 * 120.00316 * 359.97438 * 7 6 3 9 9 N 1.34785 * 120.00080 * 179.97438 * 7 6 3 10 10 C 1.39263 * 119.99939 * 174.84596 * 9 7 6 11 11 C 1.39675 * 119.57206 * 185.71432 * 10 9 7 12 12 C 1.38662 * 119.49493 * 179.97438 * 11 10 9 13 13 C 1.38346 * 118.66760 * 0.02562 * 12 11 10 14 14 C 1.40573 * 119.13143 * 0.02562 * 13 12 11 15 15 C 1.41338 * 119.78749 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00075 * 5.69157 * 15 14 13 17 17 C 1.40025 * 120.00204 * 185.69439 * 15 14 13 18 18 N 1.30740 * 120.00034 * 354.91917 * 17 15 14 19 19 Si 1.86804 * 120.00320 * 174.91786 * 17 15 14 20 20 H 1.48500 * 109.46923 * 94.99766 * 19 17 15 21 21 H 1.48490 * 109.47233 * 214.99931 * 19 17 15 22 22 H 1.48504 * 109.46856 * 334.99956 * 19 17 15 23 23 N 1.31907 * 119.58025 * 5.44099 * 10 9 7 24 24 H 1.07999 * 120.00309 * 180.02562 * 1 2 3 25 25 H 1.07997 * 120.00307 * 0.02562 * 1 2 3 26 26 H 1.07998 * 119.99849 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.46402 * 180.02562 * 4 3 2 28 28 H 1.08998 * 109.46617 * 299.99947 * 4 3 2 29 29 H 1.08996 * 109.47257 * 59.99969 * 4 3 2 30 30 H 0.96705 * 113.99080 * 60.00461 * 5 3 2 31 31 H 1.08999 * 109.46918 * 299.99079 * 6 3 2 32 32 H 1.08993 * 109.47143 * 59.99897 * 6 3 2 33 33 H 0.96994 * 119.99530 * 354.84839 * 9 7 6 34 34 H 1.07997 * 120.25621 * 359.97438 * 11 10 9 35 35 H 1.08001 * 120.66331 * 180.02562 * 12 11 10 36 36 H 1.08003 * 120.43244 * 179.97438 * 13 12 11 37 37 H 0.97000 * 120.00605 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.9431 1.3861 -1.2493 5 8 1.1348 2.3913 -0.0006 6 6 2.9430 1.3862 1.2492 7 6 3.6969 2.6911 1.2489 8 8 3.5459 3.4784 0.3389 9 7 4.5390 2.9832 2.2599 10 6 5.3158 4.1378 2.2076 11 6 6.2711 4.3715 3.1995 12 6 7.0441 5.5214 3.1455 13 6 6.8427 6.4081 2.1028 14 6 5.8648 6.1168 1.1359 15 6 5.6471 7.0133 0.0651 16 1 6.2913 7.8710 -0.0605 17 6 4.5962 6.7895 -0.8328 18 7 3.8786 5.7006 -0.7409 19 14 4.2195 8.0469 -2.1619 20 1 4.9065 7.6583 -3.4198 21 1 2.7537 8.0980 -2.3939 22 1 4.6990 9.3839 -1.7286 23 7 5.1439 4.9941 1.2190 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 3.4884 2.3299 -1.2491 28 1 3.6514 0.5576 -1.2492 29 1 2.3164 1.3283 -2.1393 30 1 0.5433 2.4033 0.7643 31 1 2.3163 1.3286 2.1392 32 1 3.6513 0.5578 1.2492 33 1 4.6038 2.3892 3.0239 34 1 6.4066 3.6620 4.0023 35 1 7.7884 5.7208 3.9022 36 1 7.4285 7.3128 2.0332 37 1 3.1503 5.5456 -1.3626 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882473907.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:57 Heat of formation + Delta-G solvation = -25.051586 kcal Electronic energy + Delta-G solvation = -21734.201457 eV Core-core repulsion = 18477.382365 eV Total energy + Delta-G solvation = -3256.819092 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.11189 -39.83018 -38.39810 -35.82087 -34.75803 -33.88846 -32.30760 -32.02844 -30.94323 -28.81508 -27.32700 -24.31606 -23.38797 -22.73011 -20.79995 -20.48992 -19.52797 -18.10945 -17.83826 -16.97573 -16.63691 -16.33528 -16.24096 -16.01626 -15.50296 -15.31074 -14.69510 -14.42332 -14.11921 -13.75582 -13.61160 -13.14327 -13.02937 -12.93767 -12.70857 -12.55674 -12.46702 -12.38088 -12.29546 -11.91887 -11.75734 -11.37427 -11.00205 -10.78349 -10.32618 -10.27279 -9.85567 -8.98603 -8.73955 -8.02341 -6.38860 0.96630 1.28483 1.36332 1.39311 1.50456 1.54201 2.27156 2.28435 2.45355 3.02597 3.43933 3.79721 3.86435 4.07697 4.15010 4.26227 4.44688 4.46287 4.66734 4.78505 4.80740 4.90228 4.91152 4.98157 5.01580 5.11544 5.18873 5.30873 5.52182 5.69022 5.71684 5.88843 5.93268 5.95597 6.19034 6.42662 6.81143 6.92265 6.95722 7.12708 7.87534 8.39776 8.59177 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.016042 B = 0.006850 C = 0.004996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.994181 B = 4086.488532 C = 5602.876397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.185 4.185 3 C 0.176 3.824 4 C -0.146 4.146 5 O -0.561 6.561 6 C -0.147 4.147 7 C 0.452 3.548 8 O -0.431 6.431 9 N -0.661 5.661 10 C 0.350 3.650 11 C -0.349 4.349 12 C -0.036 4.036 13 C -0.334 4.334 14 C 0.237 3.763 15 C -0.468 4.468 16 H 0.082 0.918 17 C 0.013 3.987 18 N -0.681 5.681 19 Si 0.969 3.031 20 H -0.267 1.267 21 H -0.275 1.275 22 H -0.256 1.256 23 N -0.505 5.505 24 H 0.120 0.880 25 H 0.097 0.903 26 H 0.136 0.864 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.376 0.624 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.418 0.582 34 H 0.130 0.870 35 H 0.134 0.866 36 H 0.101 0.899 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.514 -13.121 4.050 14.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.203 4.203 3 C 0.135 3.865 4 C -0.203 4.203 5 O -0.368 6.368 6 C -0.187 4.187 7 C 0.236 3.764 8 O -0.296 6.296 9 N -0.311 5.311 10 C 0.111 3.889 11 C -0.374 4.374 12 C -0.060 4.060 13 C -0.357 4.357 14 C 0.112 3.888 15 C -0.499 4.499 16 H 0.101 0.899 17 C -0.214 4.214 18 N -0.300 5.300 19 Si 0.791 3.209 20 H -0.192 1.192 21 H -0.200 1.200 22 H -0.179 1.179 23 N -0.224 5.224 24 H 0.138 0.862 25 H 0.115 0.885 26 H 0.153 0.847 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.224 0.776 31 H 0.133 0.867 32 H 0.139 0.861 33 H 0.255 0.745 34 H 0.148 0.852 35 H 0.152 0.848 36 H 0.119 0.881 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.181 -12.744 2.010 14.306 hybrid contribution 0.399 0.493 0.983 1.169 sum -5.782 -12.251 2.993 13.874 Atomic orbital electron populations 1.24010 0.95921 1.02929 0.98729 1.23548 0.96850 0.97955 1.01930 1.19863 0.87884 0.84746 0.94005 1.21885 0.99085 1.03180 0.96163 1.86769 1.50646 1.50242 1.49138 1.22354 1.00356 0.95134 1.00891 1.21637 0.81202 0.90248 0.83345 1.91131 1.58184 1.47484 1.32801 1.43550 1.41189 1.22541 1.23804 1.19214 0.89697 0.88167 0.91827 1.20991 1.07054 1.04090 1.05313 1.21023 0.96441 0.92627 0.95885 1.21789 1.08258 1.03844 1.01792 1.18863 0.88068 0.89626 0.92266 1.19857 1.12883 1.08378 1.08744 0.89938 1.26961 0.96045 0.97858 1.00489 1.70483 1.10468 1.20648 1.28389 0.85391 0.77921 0.79331 0.78274 1.19215 1.20026 1.17945 1.68699 1.28008 1.03558 1.22176 0.86232 0.88493 0.84658 0.92435 0.90227 0.93249 0.77586 0.86694 0.86063 0.74489 0.85178 0.84779 0.88073 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.13 13.93 67.78 0.94 -2.18 16 2 C -0.18 -3.55 8.77 25.65 0.22 -3.33 16 3 C 0.18 4.76 0.94 -11.54 -0.01 4.75 16 4 C -0.15 -4.72 8.50 71.99 0.61 -4.11 16 5 O -0.56 -18.27 10.85 -131.54 -1.43 -19.70 16 6 C -0.15 -3.63 4.94 29.85 0.15 -3.49 16 7 C 0.45 17.44 7.35 87.66 0.64 18.09 16 8 O -0.43 -21.54 8.80 14.43 0.13 -21.41 16 9 N -0.66 -24.93 5.38 -308.36 -1.66 -26.59 16 10 C 0.35 17.04 7.43 133.25 0.99 18.03 16 11 C -0.35 -15.09 9.96 22.72 0.23 -14.87 16 12 C -0.04 -1.58 10.15 22.40 0.23 -1.35 16 13 C -0.33 -17.31 9.83 22.87 0.22 -17.08 16 14 C 0.24 13.99 6.54 40.19 0.26 14.25 16 15 C -0.47 -27.30 9.13 23.47 0.21 -27.09 16 16 H 0.08 4.54 7.85 -2.91 -0.02 4.52 16 17 C 0.01 0.70 5.49 85.29 0.47 1.17 16 18 N -0.68 -39.94 9.08 21.84 0.20 -39.74 16 19 Si 0.97 42.10 29.56 68.60 2.03 44.13 16 20 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 21 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 23 N -0.50 -29.24 5.74 -186.36 -1.07 -30.31 16 24 H 0.12 1.54 8.06 -2.91 -0.02 1.52 16 25 H 0.10 1.85 6.41 -2.91 -0.02 1.83 16 26 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 27 H 0.06 2.48 5.51 -2.39 -0.01 2.46 16 28 H 0.08 2.10 8.14 -2.39 -0.02 2.09 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.38 9.33 8.05 -74.05 -0.60 8.74 16 31 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.42 11.34 8.70 -92.71 -0.81 10.53 16 34 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 35 H 0.13 4.80 8.06 -2.91 -0.02 4.78 16 36 H 0.10 4.92 8.06 -2.91 -0.02 4.90 16 37 H 0.27 15.16 8.29 -92.71 -0.77 14.39 16 Total: -1.00 -77.18 311.36 3.07 -74.11 By element: Atomic # 1 Polarization: 37.02 SS G_CDS: -0.30 Total: 36.72 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: 5.18 Total: -17.21 kcal Atomic # 7 Polarization: -94.11 SS G_CDS: -2.53 Total: -96.64 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -1.30 Total: -41.11 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -77.18 3.07 -74.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473907.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.060 kcal (2) G-P(sol) polarization free energy of solvation -77.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds