Wall clock time and date at job start Mon Mar 30 2020 20:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50707 * 119.99832 * 2 1 4 4 C 1.53002 * 109.46740 * 119.99986 * 3 2 1 5 5 O 1.42899 * 109.47014 * 0.02562 * 3 2 1 6 6 C 1.53001 * 109.46946 * 239.99622 * 3 2 1 7 7 C 1.50700 * 109.47008 * 58.32844 * 6 3 2 8 8 O 1.21276 * 120.00049 * 3.49290 * 7 6 3 9 9 N 1.34777 * 119.99826 * 183.48992 * 7 6 3 10 10 C 1.39262 * 119.99853 * 185.58113 * 9 7 6 11 11 C 1.39679 * 119.57630 * 18.80735 * 10 9 7 12 12 C 1.38653 * 119.49627 * 179.97438 * 11 10 9 13 13 C 1.38352 * 118.66987 * 359.72365 * 12 11 10 14 14 C 1.40579 * 119.12720 * 0.54142 * 13 12 11 15 15 C 1.41339 * 119.78667 * 179.72826 * 14 13 12 16 16 H 1.08003 * 119.99931 * 4.98485 * 15 14 13 17 17 C 1.40025 * 119.99948 * 184.99133 * 15 14 13 18 18 N 1.30743 * 120.00115 * 184.62994 * 17 15 14 19 19 Si 1.86803 * 120.00051 * 4.63117 * 17 15 14 20 20 H 1.48499 * 109.46922 * 179.97438 * 19 17 15 21 21 H 1.48499 * 109.47200 * 300.00177 * 19 17 15 22 22 H 1.48500 * 109.46898 * 60.00149 * 19 17 15 23 23 N 1.31907 * 119.57442 * 198.78153 * 10 9 7 24 24 H 1.07995 * 120.00161 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.00036 * 179.97438 * 1 2 3 26 26 H 1.07995 * 120.00161 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.46780 * 184.92459 * 4 3 2 28 28 H 1.09000 * 109.47262 * 304.91763 * 4 3 2 29 29 H 1.08986 * 109.47590 * 64.92099 * 4 3 2 30 30 H 0.96703 * 113.99316 * 299.99364 * 5 3 2 31 31 H 1.08996 * 109.47043 * 298.32951 * 6 3 2 32 32 H 1.09006 * 109.46554 * 178.32711 * 6 3 2 33 33 H 0.96999 * 119.99693 * 5.58539 * 9 7 6 34 34 H 1.07998 * 120.24887 * 359.95767 * 11 10 9 35 35 H 1.08000 * 120.66716 * 180.02562 * 12 11 10 36 36 H 1.08000 * 120.43608 * 180.28354 * 13 12 11 37 37 H 0.97002 * 119.99689 * 354.98137 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.9431 1.3862 1.2493 5 8 1.1349 2.3913 0.0006 6 6 2.9432 1.3862 -1.2492 7 6 2.0811 1.2650 -2.4793 8 8 0.8755 1.1912 -2.3701 9 7 2.6499 1.2388 -3.7009 10 6 1.8508 1.2442 -4.8414 11 6 0.5225 1.6668 -4.7505 12 6 -0.2715 1.6720 -5.8871 13 6 0.2830 1.2607 -7.0861 14 6 1.6245 0.8414 -7.1114 15 6 2.2034 0.4129 -8.3275 16 1 1.6419 0.4838 -9.2474 17 6 3.5048 -0.1038 -8.3397 18 7 4.0738 -0.4157 -9.4747 19 14 4.4280 -0.3475 -6.7341 20 1 5.7754 -0.9038 -7.0175 21 1 4.5667 0.9578 -6.0398 22 1 3.6755 -1.2910 -5.8688 23 7 2.3580 0.8507 -5.9937 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 3.4207 2.3650 1.2945 28 1 2.3276 1.2409 2.1371 29 1 3.7075 0.6105 1.2064 30 1 0.5433 2.4033 -0.7643 31 1 3.6710 0.5749 -1.2343 32 1 3.4655 2.3428 -1.2643 33 1 3.6160 1.2161 -3.7856 34 1 0.1171 1.9868 -3.8020 35 1 -1.3008 1.9954 -5.8385 36 1 -0.3083 1.2577 -7.9898 37 1 3.5700 -0.3582 -10.3017 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882473908.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:13:00 Heat of formation + Delta-G solvation = -58.890825 kcal Electronic energy + Delta-G solvation = -21414.490475 eV Core-core repulsion = 18156.204004 eV Total energy + Delta-G solvation = -3258.286472 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.89378 -40.32187 -38.67372 -36.19935 -35.37608 -33.90967 -32.99827 -32.43894 -31.28787 -29.09439 -27.22290 -24.37788 -23.62704 -23.01832 -21.49989 -20.55015 -20.27553 -18.91460 -18.19583 -17.64025 -17.06013 -16.83222 -16.45197 -16.14092 -15.52931 -15.43757 -15.08961 -14.71546 -14.50943 -14.24618 -13.75786 -13.63581 -13.34735 -13.02551 -12.95011 -12.90770 -12.66940 -12.53235 -12.25152 -11.94838 -11.76985 -11.59838 -11.11914 -11.04540 -10.80624 -10.41731 -10.05107 -9.75485 -9.28776 -9.19272 -6.83751 0.50296 0.72899 1.46488 1.54339 1.57262 1.71301 1.88511 2.07353 2.43745 2.66691 3.35481 3.49498 3.56943 3.80278 3.88333 4.07303 4.35304 4.41235 4.44729 4.58672 4.67135 4.68523 4.70067 4.80892 4.91776 4.98773 5.16356 5.33531 5.34008 5.38284 5.42599 5.71915 5.74132 5.80388 5.92376 5.94045 6.28764 6.41088 6.63697 6.72700 7.08599 7.49397 7.93447 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.026311 B = 0.005197 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.919112 B = 5386.678878 C = 6084.100817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.196 4.196 3 C 0.172 3.828 4 C -0.131 4.131 5 O -0.574 6.574 6 C -0.157 4.157 7 C 0.516 3.484 8 O -0.532 6.532 9 N -0.654 5.654 10 C 0.377 3.623 11 C -0.304 4.304 12 C -0.028 4.028 13 C -0.296 4.296 14 C 0.258 3.742 15 C -0.511 4.511 16 H 0.066 0.934 17 C 0.013 3.987 18 N -0.830 5.830 19 Si 1.190 2.810 20 H -0.329 1.329 21 H -0.267 1.267 22 H -0.301 1.301 23 N -0.613 5.613 24 H 0.094 0.906 25 H 0.096 0.904 26 H 0.122 0.878 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.096 0.904 30 H 0.383 0.617 31 H 0.136 0.864 32 H 0.131 0.869 33 H 0.419 0.581 34 H 0.155 0.845 35 H 0.142 0.858 36 H 0.111 0.889 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.130 2.686 19.361 19.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.214 4.214 3 C 0.131 3.869 4 C -0.188 4.188 5 O -0.385 6.385 6 C -0.197 4.197 7 C 0.306 3.694 8 O -0.409 6.409 9 N -0.300 5.300 10 C 0.145 3.855 11 C -0.328 4.328 12 C -0.052 4.052 13 C -0.318 4.318 14 C 0.133 3.867 15 C -0.544 4.544 16 H 0.084 0.916 17 C -0.203 4.203 18 N -0.453 5.453 19 Si 1.022 2.978 20 H -0.262 1.262 21 H -0.194 1.194 22 H -0.230 1.230 23 N -0.339 5.339 24 H 0.112 0.888 25 H 0.115 0.885 26 H 0.140 0.860 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.114 0.886 30 H 0.236 0.764 31 H 0.154 0.846 32 H 0.149 0.851 33 H 0.256 0.744 34 H 0.173 0.827 35 H 0.160 0.840 36 H 0.129 0.871 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.821 2.090 20.464 20.651 hybrid contribution -2.572 0.342 -2.419 3.547 sum -0.750 2.432 18.046 18.225 Atomic orbital electron populations 1.23714 0.96589 1.01642 0.98453 1.23542 0.96846 0.98879 1.02182 1.20056 0.88085 0.84451 0.94310 1.21733 0.98694 1.03966 0.94391 1.86421 1.51354 1.49532 1.51212 1.22578 0.99406 1.08140 0.89580 1.21514 0.89468 0.74216 0.84220 1.90523 1.15973 1.48416 1.85944 1.43503 1.10974 1.71630 1.03885 1.18531 0.89528 0.91848 0.85550 1.21909 0.94104 1.15601 1.01230 1.21349 0.99436 0.93045 0.91402 1.21755 0.96358 1.14779 0.98957 1.18426 0.89819 0.88539 0.89901 1.20735 1.01780 1.38052 0.93815 0.91567 1.28622 0.96290 0.88872 1.06503 1.70670 1.39202 1.35292 1.00147 0.81404 0.70470 0.77347 0.68541 1.26244 1.19447 1.23014 1.65983 1.38349 1.29881 0.99682 0.88822 0.88545 0.86002 0.90891 0.92028 0.88552 0.76425 0.84568 0.85111 0.74368 0.82746 0.83983 0.87053 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.92 12.69 67.78 0.86 -3.06 16 2 C -0.20 -4.12 7.52 25.65 0.19 -3.93 16 3 C 0.17 3.25 1.08 -11.54 -0.01 3.24 16 4 C -0.13 -1.76 8.82 71.98 0.64 -1.12 16 5 O -0.57 -13.71 11.93 -131.64 -1.57 -15.28 16 6 C -0.16 -2.67 4.98 29.85 0.15 -2.52 16 7 C 0.52 13.97 7.17 87.66 0.63 14.60 16 8 O -0.53 -16.77 8.75 14.32 0.13 -16.64 16 9 N -0.65 -21.08 5.41 -308.36 -1.67 -22.75 16 10 C 0.38 16.01 7.51 133.25 1.00 17.01 16 11 C -0.30 -12.47 8.83 22.72 0.20 -12.27 16 12 C -0.03 -1.15 10.15 22.40 0.23 -0.92 16 13 C -0.30 -13.87 9.83 22.87 0.22 -13.64 16 14 C 0.26 13.53 6.40 40.19 0.26 13.78 16 15 C -0.51 -28.61 9.57 23.47 0.22 -28.39 16 16 H 0.07 3.78 8.05 -2.91 -0.02 3.76 16 17 C 0.01 0.74 5.52 85.29 0.47 1.21 16 18 N -0.83 -46.18 13.65 21.84 0.30 -45.88 16 19 Si 1.19 55.79 25.61 68.60 1.76 57.55 16 20 H -0.33 -15.06 7.11 99.48 0.71 -14.35 16 21 H -0.27 -11.66 6.61 99.48 0.66 -11.00 16 22 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 23 N -0.61 -29.97 4.54 -186.35 -0.85 -30.81 16 24 H 0.09 2.32 6.41 -2.91 -0.02 2.30 16 25 H 0.10 2.11 8.06 -2.91 -0.02 2.08 16 26 H 0.12 2.21 8.06 -2.91 -0.02 2.18 16 27 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.38 9.74 5.63 -74.06 -0.42 9.32 16 31 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.13 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.42 11.58 8.83 -92.71 -0.82 10.76 16 34 H 0.16 5.89 5.33 -3.21 -0.02 5.88 16 35 H 0.14 4.70 8.06 -2.91 -0.02 4.68 16 36 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 37 H 0.28 15.14 8.72 -92.71 -0.81 14.33 16 Total: -1.00 -65.68 306.69 2.93 -62.75 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: -0.22 Total: 27.08 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: 5.06 Total: -16.02 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -2.22 Total: -99.44 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -1.44 Total: -31.92 kcal Atomic # 14 Polarization: 55.79 SS G_CDS: 1.76 Total: 57.55 kcal Total: -65.68 2.93 -62.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473908.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.854 kcal (2) G-P(sol) polarization free energy of solvation -65.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds