Wall clock time and date at job start Mon Mar 30 2020 20:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46597 * 2 1 4 4 H 1.09003 * 109.47144 * 304.89675 * 3 2 1 5 5 C 1.50703 * 109.46798 * 184.90584 * 3 2 1 6 6 H 1.08005 * 119.99890 * 245.45617 * 5 3 2 7 7 C 1.37878 * 120.00481 * 65.44929 * 5 3 2 8 8 N 1.31511 * 119.99582 * 9.47365 * 7 5 3 9 9 Si 1.86797 * 120.00322 * 189.46918 * 7 5 3 10 10 H 1.48504 * 109.47018 * 84.99548 * 9 7 5 11 11 H 1.48493 * 109.47461 * 204.99491 * 9 7 5 12 12 H 1.48504 * 109.47158 * 325.00047 * 9 7 5 13 13 N 1.46498 * 109.47654 * 64.90690 * 3 2 1 14 14 C 1.34777 * 119.99401 * 275.00071 * 13 3 2 15 15 O 1.21555 * 120.00539 * 359.97438 * 14 13 3 16 16 C 1.47856 * 119.99712 * 179.97438 * 14 13 3 17 17 C 1.39714 * 120.47997 * 359.97438 * 16 14 13 18 18 N 1.31749 * 120.94453 * 180.29455 * 17 16 14 19 19 C 1.31720 * 122.07189 * 359.43729 * 18 17 16 20 20 C 1.39904 * 120.84247 * 0.56025 * 19 18 17 21 21 C 1.47178 * 120.51801 * 179.70444 * 20 19 18 22 22 C 1.50696 * 120.00027 * 0.02562 * 21 20 19 23 23 O 1.21255 * 119.99471 * 180.02562 * 21 20 19 24 24 C 1.39663 * 120.47837 * 180.02562 * 16 14 13 25 25 H 1.09005 * 109.47042 * 299.99652 * 1 2 3 26 26 H 1.08999 * 109.47165 * 59.99814 * 1 2 3 27 27 H 1.08995 * 109.46618 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46683 * 240.00495 * 2 1 3 29 29 H 1.08995 * 109.47470 * 119.99784 * 2 1 3 30 30 H 0.97002 * 120.00065 * 180.02562 * 8 7 5 31 31 H 0.96989 * 120.00465 * 94.98935 * 13 3 2 32 32 H 1.08004 * 119.52657 * 0.02562 * 17 16 14 33 33 H 1.08002 * 119.57496 * 180.26795 * 19 18 17 34 34 H 1.08999 * 109.46975 * 90.00508 * 22 21 20 35 35 H 1.09007 * 109.46792 * 209.99615 * 22 21 20 36 36 H 1.08995 * 109.47030 * 329.99481 * 22 21 20 37 37 H 1.08006 * 120.93435 * 359.95613 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6067 1.9811 -0.8429 5 6 3.5421 1.4443 -0.1215 6 1 4.1493 1.8091 0.6938 7 6 4.1412 0.9802 -1.2733 8 7 3.4096 0.7116 -2.3327 9 14 5.9919 0.7330 -1.3292 10 1 6.3290 -0.6065 -0.7837 11 1 6.4618 0.8277 -2.7346 12 1 6.6561 1.7811 -0.5134 13 7 1.6505 2.0983 1.2508 14 6 0.4329 2.6651 1.3636 15 8 -0.3418 2.6327 0.4275 16 6 0.0395 3.3265 2.6262 17 6 0.9218 3.3691 3.7087 18 7 0.5787 3.9509 4.8398 19 6 -0.5956 4.5251 5.0029 20 6 -1.5411 4.5296 3.9718 21 6 -2.8534 5.1676 4.1640 22 6 -3.1871 5.8233 5.4792 23 8 -3.6661 5.1657 3.2641 24 6 -1.2198 3.9166 2.7543 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8310 0.3847 -3.1429 31 1 2.2686 2.1243 1.9977 32 1 1.8975 2.9149 3.6183 33 1 -0.8331 4.9942 5.9463 34 1 -2.8861 6.8705 5.4498 35 1 -4.2609 5.7587 5.6553 36 1 -2.6558 5.3148 6.2838 37 1 -1.9258 3.9014 1.9371 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897400293.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:13:31 Heat of formation + Delta-G solvation = -46.018953 kcal Electronic energy + Delta-G solvation = -20793.595588 eV Core-core repulsion = 17535.867282 eV Total energy + Delta-G solvation = -3257.728306 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.82916 -39.30598 -38.47108 -35.20181 -32.97516 -32.67970 -32.16894 -31.00657 -29.67159 -27.09917 -25.00714 -24.03562 -22.89262 -21.51112 -20.00300 -19.44283 -18.07865 -17.07203 -16.76959 -16.20505 -15.50204 -15.42443 -15.29986 -14.79598 -14.67152 -14.31076 -13.75644 -13.42245 -13.20625 -12.87732 -12.65558 -12.59720 -12.46639 -12.16850 -11.54695 -11.41612 -11.06913 -10.83791 -10.51223 -10.37654 -10.28219 -10.06605 -9.81603 -9.71940 -9.36745 -9.19434 -9.16068 -8.53815 -7.98725 -6.19730 -4.25864 0.17472 0.80271 2.06818 3.18438 3.22524 3.29592 3.30488 3.56321 3.89652 3.92405 4.09207 4.31850 4.53061 4.60107 4.71827 4.82473 5.03953 5.04956 5.13632 5.21065 5.35646 5.56744 5.82434 5.97469 6.25283 6.29370 6.33020 6.53175 6.92633 7.09353 7.18951 7.21999 7.29591 7.52005 7.55660 7.63477 7.75460 7.99669 8.50333 8.70090 8.94645 9.39920 10.88426 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.030632 B = 0.003972 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.863076 B = 7047.500184 C = 7586.944210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.120 4.120 3 C 0.268 3.732 4 H 0.059 0.941 5 C -0.541 4.541 6 H 0.062 0.938 7 C 0.070 3.930 8 N -0.878 5.878 9 Si 0.898 3.102 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.697 5.697 14 C 0.545 3.455 15 O -0.536 6.536 16 C -0.181 4.181 17 C 0.159 3.841 18 N -0.493 5.493 19 C 0.156 3.844 20 C -0.237 4.237 21 C 0.400 3.600 22 C -0.199 4.199 23 O -0.451 6.451 24 C 0.033 3.967 25 H 0.039 0.961 26 H 0.052 0.948 27 H 0.025 0.975 28 H 0.081 0.919 29 H 0.036 0.964 30 H 0.266 0.734 31 H 0.387 0.613 32 H 0.168 0.832 33 H 0.168 0.832 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.268 6.796 16.014 18.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.159 4.159 3 C 0.167 3.833 4 H 0.077 0.923 5 C -0.579 4.579 6 H 0.080 0.920 7 C -0.134 4.134 8 N -0.514 5.514 9 Si 0.726 3.274 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.345 5.345 14 C 0.329 3.671 15 O -0.414 6.414 16 C -0.186 4.186 17 C 0.002 3.998 18 N -0.201 5.201 19 C -0.002 4.002 20 C -0.240 4.240 21 C 0.277 3.723 22 C -0.256 4.256 23 O -0.326 6.326 24 C 0.007 3.993 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.044 0.956 28 H 0.100 0.900 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.221 0.779 32 H 0.185 0.815 33 H 0.185 0.815 34 H 0.119 0.881 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -7.606 6.676 15.302 18.346 hybrid contribution 0.865 -0.229 -0.349 0.960 sum -6.741 6.447 14.953 17.624 Atomic orbital electron populations 1.21858 0.98019 0.98347 1.01485 1.21863 0.92971 0.99690 1.01382 1.18888 0.94591 0.88986 0.80853 0.92298 1.21147 0.90342 1.44429 1.01963 0.91976 1.24881 0.98561 0.95030 0.94922 1.69979 1.35851 1.43455 1.02163 0.86514 0.84839 0.78761 0.77322 1.20369 1.21154 1.19857 1.46466 1.13988 1.55228 1.18804 1.17864 0.83356 0.79629 0.86255 1.90783 1.51507 1.59783 1.39367 1.21434 0.96233 1.03475 0.97503 1.23367 0.98745 0.90796 0.86919 1.67739 1.18354 1.09821 1.24141 1.23338 0.87697 0.91516 0.97660 1.21549 0.98833 1.06761 0.96823 1.22348 0.84827 0.75861 0.89248 1.22239 1.04665 1.02759 0.95915 1.90585 1.48884 1.49220 1.43886 1.22061 0.94581 0.86554 0.96087 0.94185 0.92841 0.95604 0.90025 0.94558 0.92456 0.77920 0.81524 0.81502 0.88148 0.89099 0.89392 0.82547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.51 37.16 0.32 -2.71 16 2 C -0.12 -2.79 5.50 -26.73 -0.15 -2.94 16 3 C 0.27 6.50 2.11 -69.08 -0.15 6.35 16 4 H 0.06 1.68 7.52 -51.93 -0.39 1.29 16 5 C -0.54 -13.80 8.66 -34.44 -0.30 -14.10 16 6 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 7 C 0.07 1.85 5.16 -17.82 -0.09 1.76 16 8 N -0.88 -24.34 12.16 55.43 0.67 -23.66 16 9 Si 0.90 20.15 29.55 -169.99 -5.02 15.13 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 13 N -0.70 -13.74 4.97 -55.87 -0.28 -14.02 16 14 C 0.55 10.55 6.34 -12.32 -0.08 10.47 16 15 O -0.54 -12.25 13.55 5.32 0.07 -12.18 16 16 C -0.18 -2.77 5.88 -104.88 -0.62 -3.39 16 17 C 0.16 2.04 10.71 -17.04 -0.18 1.86 16 18 N -0.49 -5.85 10.33 -12.50 -0.13 -5.98 16 19 C 0.16 1.51 10.54 -16.98 -0.18 1.34 16 20 C -0.24 -2.70 5.88 -104.96 -0.62 -3.31 16 21 C 0.40 4.17 7.23 -30.68 -0.22 3.95 16 22 C -0.20 -1.10 9.76 36.00 0.35 -0.74 16 23 O -0.45 -6.50 17.16 5.58 0.10 -6.40 16 24 C 0.03 0.48 9.25 -38.37 -0.35 0.13 16 25 H 0.04 0.84 5.65 -51.93 -0.29 0.55 16 26 H 0.05 1.24 7.84 -51.93 -0.41 0.83 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 2.09 6.80 -51.93 -0.35 1.74 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.27 7.00 8.31 -40.82 -0.34 6.67 16 31 H 0.39 6.43 6.58 -40.82 -0.27 6.16 16 32 H 0.17 1.84 6.40 -52.48 -0.34 1.50 16 33 H 0.17 0.91 6.36 -52.49 -0.33 0.58 16 34 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.28 6.49 -51.93 -0.34 -0.05 16 37 H 0.16 2.49 7.40 -52.48 -0.39 2.10 16 LS Contribution 314.22 15.07 4.74 4.74 Total: -1.00 -31.76 314.22 -6.46 -38.21 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -4.34 Total: 5.51 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -2.27 Total: -1.34 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: 0.27 Total: -43.66 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: 0.17 Total: -18.58 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.76 -6.46 -38.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897400293.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.806 kcal (2) G-P(sol) polarization free energy of solvation -31.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds