Wall clock time and date at job start Mon Mar 30 2020 20:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46597 * 2 1 4 4 H 1.09003 * 109.47144 * 304.89675 * 3 2 1 5 5 C 1.50703 * 109.46798 * 184.90584 * 3 2 1 6 6 H 1.08005 * 119.99890 * 245.45617 * 5 3 2 7 7 C 1.37878 * 120.00481 * 65.44929 * 5 3 2 8 8 N 1.31511 * 119.99582 * 9.47365 * 7 5 3 9 9 Si 1.86797 * 120.00322 * 189.46918 * 7 5 3 10 10 H 1.48504 * 109.47018 * 84.99548 * 9 7 5 11 11 H 1.48493 * 109.47461 * 204.99491 * 9 7 5 12 12 H 1.48504 * 109.47158 * 325.00047 * 9 7 5 13 13 N 1.46498 * 109.47654 * 64.90690 * 3 2 1 14 14 C 1.34777 * 119.99401 * 275.00071 * 13 3 2 15 15 O 1.21555 * 120.00539 * 359.97438 * 14 13 3 16 16 C 1.47856 * 119.99712 * 179.97438 * 14 13 3 17 17 C 1.39714 * 120.47997 * 359.97438 * 16 14 13 18 18 N 1.31749 * 120.94453 * 180.29455 * 17 16 14 19 19 C 1.31720 * 122.07189 * 359.43729 * 18 17 16 20 20 C 1.39904 * 120.84247 * 0.56025 * 19 18 17 21 21 C 1.47178 * 120.51801 * 179.70444 * 20 19 18 22 22 C 1.50696 * 120.00027 * 0.02562 * 21 20 19 23 23 O 1.21255 * 119.99471 * 180.02562 * 21 20 19 24 24 C 1.39663 * 120.47837 * 180.02562 * 16 14 13 25 25 H 1.09005 * 109.47042 * 299.99652 * 1 2 3 26 26 H 1.08999 * 109.47165 * 59.99814 * 1 2 3 27 27 H 1.08995 * 109.46618 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46683 * 240.00495 * 2 1 3 29 29 H 1.08995 * 109.47470 * 119.99784 * 2 1 3 30 30 H 0.97002 * 120.00065 * 180.02562 * 8 7 5 31 31 H 0.96989 * 120.00465 * 94.98935 * 13 3 2 32 32 H 1.08004 * 119.52657 * 0.02562 * 17 16 14 33 33 H 1.08002 * 119.57496 * 180.26795 * 19 18 17 34 34 H 1.08999 * 109.46975 * 90.00508 * 22 21 20 35 35 H 1.09007 * 109.46792 * 209.99615 * 22 21 20 36 36 H 1.08995 * 109.47030 * 329.99481 * 22 21 20 37 37 H 1.08006 * 120.93435 * 359.95613 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6067 1.9811 -0.8429 5 6 3.5421 1.4443 -0.1215 6 1 4.1493 1.8091 0.6938 7 6 4.1412 0.9802 -1.2733 8 7 3.4096 0.7116 -2.3327 9 14 5.9919 0.7330 -1.3292 10 1 6.3290 -0.6065 -0.7837 11 1 6.4618 0.8277 -2.7346 12 1 6.6561 1.7811 -0.5134 13 7 1.6505 2.0983 1.2508 14 6 0.4329 2.6651 1.3636 15 8 -0.3418 2.6327 0.4275 16 6 0.0395 3.3265 2.6262 17 6 0.9218 3.3691 3.7087 18 7 0.5787 3.9509 4.8398 19 6 -0.5956 4.5251 5.0029 20 6 -1.5411 4.5296 3.9718 21 6 -2.8534 5.1676 4.1640 22 6 -3.1871 5.8233 5.4792 23 8 -3.6661 5.1657 3.2641 24 6 -1.2198 3.9166 2.7543 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8310 0.3847 -3.1429 31 1 2.2686 2.1243 1.9977 32 1 1.8975 2.9149 3.6183 33 1 -0.8331 4.9942 5.9463 34 1 -2.8861 6.8705 5.4498 35 1 -4.2609 5.7587 5.6553 36 1 -2.6558 5.3148 6.2838 37 1 -1.9258 3.9014 1.9371 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897400293.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:13:30 Heat of formation + Delta-G solvation = -68.323435 kcal Electronic energy + Delta-G solvation = -20794.562783 eV Core-core repulsion = 17535.867282 eV Total energy + Delta-G solvation = -3258.695501 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.90256 -40.58327 -39.64924 -37.01786 -34.51841 -33.76668 -33.66775 -32.54569 -30.46500 -28.95335 -26.11507 -25.33773 -24.49935 -22.79564 -21.62018 -20.88118 -19.35315 -18.32690 -18.00562 -17.40233 -17.08950 -16.71279 -16.47034 -16.13044 -16.07944 -15.53925 -15.06698 -14.75045 -14.61810 -14.35731 -13.89868 -13.67555 -13.46061 -13.31157 -13.07038 -12.97570 -12.93363 -12.62650 -12.23745 -12.11382 -11.69291 -11.50817 -11.13802 -11.12607 -10.86754 -10.56745 -10.50873 -10.41187 -9.74447 -8.20073 -6.33530 -0.76693 -0.29920 1.19860 1.46028 1.47009 1.56379 1.92857 2.24815 2.48013 2.73643 2.90506 3.12192 3.22154 3.59604 3.65029 3.69492 3.98232 4.07832 4.30079 4.43033 4.49137 4.64389 4.67748 4.74371 4.78156 4.88804 5.02174 5.19832 5.25271 5.29972 5.36992 5.45018 5.58481 5.71286 5.85357 6.03408 6.41468 6.60054 6.73680 6.84166 7.29031 7.44231 8.88725 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.030632 B = 0.003972 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.863076 B = 7047.500184 C = 7586.944210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.112 4.112 3 C 0.276 3.724 4 H 0.005 0.995 5 C -0.551 4.551 6 H 0.077 0.923 7 C 0.018 3.982 8 N -0.917 5.917 9 Si 0.968 3.032 10 H -0.270 1.270 11 H -0.290 1.290 12 H -0.262 1.262 13 N -0.692 5.692 14 C 0.545 3.455 15 O -0.581 6.581 16 C -0.202 4.202 17 C 0.172 3.828 18 N -0.496 5.496 19 C 0.184 3.816 20 C -0.239 4.239 21 C 0.402 3.598 22 C -0.190 4.190 23 O -0.503 6.503 24 C 0.018 3.982 25 H 0.042 0.958 26 H 0.025 0.975 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.265 0.735 31 H 0.405 0.595 32 H 0.184 0.816 33 H 0.223 0.777 34 H 0.124 0.876 35 H 0.094 0.906 36 H 0.121 0.879 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.237 7.652 20.148 22.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.152 4.152 3 C 0.173 3.827 4 H 0.023 0.977 5 C -0.589 4.589 6 H 0.095 0.905 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.195 1.195 11 H -0.216 1.216 12 H -0.186 1.186 13 N -0.341 5.341 14 C 0.331 3.669 15 O -0.463 6.463 16 C -0.207 4.207 17 C 0.015 3.985 18 N -0.204 5.204 19 C 0.026 3.974 20 C -0.242 4.242 21 C 0.282 3.718 22 C -0.246 4.246 23 O -0.381 6.381 24 C -0.009 4.009 25 H 0.061 0.939 26 H 0.044 0.956 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.241 0.759 32 H 0.201 0.799 33 H 0.239 0.761 34 H 0.142 0.858 35 H 0.113 0.887 36 H 0.140 0.860 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.555 7.545 19.502 21.914 hybrid contribution 0.462 -0.412 -1.564 1.682 sum -6.093 7.132 17.938 20.242 Atomic orbital electron populations 1.21703 0.96974 0.99439 1.00282 1.21715 0.93805 0.98913 1.00723 1.18465 0.94060 0.89109 0.81107 0.97744 1.21530 0.91018 1.43955 1.02348 0.90515 1.25777 1.03228 0.94736 0.94528 1.70136 1.37874 1.44614 1.02811 0.85417 0.79123 0.79126 0.77047 1.19499 1.21649 1.18614 1.46158 1.14757 1.55241 1.17958 1.18431 0.82439 0.78751 0.87239 1.90757 1.52703 1.61388 1.41479 1.20985 0.97515 1.05740 0.96457 1.23549 0.98679 0.90019 0.86257 1.67917 1.19260 1.10128 1.23048 1.24175 0.85822 0.88817 0.98556 1.21830 1.00220 1.06247 0.95868 1.23125 0.83445 0.74616 0.90584 1.22312 1.05546 1.03691 0.93090 1.90586 1.50110 1.51344 1.46093 1.21996 0.94034 0.87728 0.97125 0.93876 0.95570 0.93172 0.92759 0.92845 0.92616 0.75887 0.79873 0.76053 0.85826 0.88693 0.86028 0.85398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.68 8.51 71.98 0.61 -5.06 16 2 C -0.11 -5.39 5.50 30.60 0.17 -5.22 16 3 C 0.28 13.88 2.11 44.25 0.09 13.97 16 4 H 0.00 0.28 7.52 -2.39 -0.02 0.26 16 5 C -0.55 -28.36 8.66 25.60 0.22 -28.14 16 6 H 0.08 3.64 7.74 -2.91 -0.02 3.61 16 7 C 0.02 0.95 5.16 84.66 0.44 1.39 16 8 N -0.92 -52.66 12.16 21.45 0.26 -52.40 16 9 Si 0.97 41.31 29.55 68.60 2.03 43.34 16 10 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 11 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 13 N -0.69 -27.83 4.97 -448.96 -2.23 -30.06 16 14 C 0.54 21.97 6.34 86.79 0.55 22.53 16 15 O -0.58 -28.57 13.55 -3.89 -0.05 -28.62 16 16 C -0.20 -6.20 5.88 -20.03 -0.12 -6.32 16 17 C 0.17 4.06 10.71 85.06 0.91 4.98 16 18 N -0.50 -9.85 10.33 -193.45 -2.00 -11.85 16 19 C 0.18 2.73 10.54 85.11 0.90 3.62 16 20 C -0.24 -4.97 5.88 -20.09 -0.12 -5.09 16 21 C 0.40 7.62 7.23 28.03 0.20 7.82 16 22 C -0.19 -1.23 9.76 71.23 0.70 -0.54 16 23 O -0.50 -14.69 17.16 -2.95 -0.05 -14.74 16 24 C 0.02 0.52 9.25 23.05 0.21 0.74 16 25 H 0.04 1.88 5.65 -2.38 -0.01 1.86 16 26 H 0.03 1.27 7.84 -2.39 -0.02 1.25 16 27 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.05 2.89 6.80 -2.39 -0.02 2.88 16 29 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 31 H 0.40 13.16 6.58 -92.72 -0.61 12.55 16 32 H 0.18 3.58 6.40 -2.91 -0.02 3.56 16 33 H 0.22 0.80 6.36 -2.91 -0.02 0.78 16 34 H 0.12 0.35 8.14 -2.39 -0.02 0.34 16 35 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 36 H 0.12 -0.02 6.49 -2.39 -0.02 -0.04 16 37 H 0.13 4.49 7.40 -2.91 -0.02 4.47 16 Total: -1.00 -74.87 314.22 3.22 -71.65 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.50 Total: 18.00 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 4.77 Total: 4.68 kcal Atomic # 7 Polarization: -90.34 SS G_CDS: -3.97 Total: -94.31 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: -0.10 Total: -43.36 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -74.87 3.22 -71.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897400293.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.329 kcal (2) G-P(sol) polarization free energy of solvation -74.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds