Wall clock time and date at job start Mon Mar 30 2020 20:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47219 * 2 1 4 4 N 1.46500 * 109.47045 * 119.99980 * 2 1 3 5 5 C 1.46504 * 119.99929 * 122.06438 * 4 2 1 6 6 C 1.50701 * 109.47152 * 269.99982 * 5 4 2 7 7 H 1.08002 * 119.99830 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99975 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00253 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 119.99909 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46983 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47084 * 120.00054 * 10 8 6 13 13 H 1.48506 * 109.46843 * 240.00087 * 10 8 6 14 14 C 1.34767 * 120.00230 * 302.06352 * 4 2 1 15 15 O 1.21548 * 120.00317 * 211.56217 * 14 4 2 16 16 C 1.47859 * 120.00081 * 31.56214 * 14 4 2 17 17 C 1.39714 * 120.47356 * 317.95674 * 16 14 4 18 18 N 1.31755 * 120.94084 * 179.97438 * 17 16 14 19 19 C 1.31708 * 122.07496 * 0.02562 * 18 17 16 20 20 C 1.39907 * 120.84502 * 359.97438 * 19 18 17 21 21 C 1.47173 * 120.52276 * 180.02562 * 20 19 18 22 22 O 1.21253 * 120.00032 * 180.02562 * 21 20 19 23 23 C 1.39664 * 120.48162 * 137.93756 * 16 14 4 24 24 H 1.09005 * 109.47457 * 253.66409 * 1 2 3 25 25 H 1.09002 * 109.47214 * 13.66401 * 1 2 3 26 26 H 1.09005 * 109.47726 * 133.66203 * 1 2 3 27 27 H 1.09000 * 109.46695 * 239.99662 * 2 1 3 28 28 H 1.09001 * 109.47109 * 223.25832 * 3 2 1 29 29 H 1.09001 * 109.47615 * 343.25454 * 3 2 1 30 30 H 1.08998 * 109.47354 * 103.25886 * 3 2 1 31 31 H 1.09004 * 109.47070 * 29.99471 * 5 4 2 32 32 H 1.09000 * 109.47218 * 150.00110 * 5 4 2 33 33 H 0.97001 * 120.00474 * 179.97438 * 9 8 6 34 34 H 1.08001 * 119.53202 * 359.96157 * 17 16 14 35 35 H 1.08001 * 119.58081 * 179.97438 * 19 18 17 36 36 H 1.08007 * 120.00049 * 359.97438 * 21 20 19 37 37 H 1.07992 * 120.93144 * 359.97438 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8975 -1.8548 1.0622 6 6 2.0637 -3.1079 0.9867 7 1 0.9866 -3.0435 1.0334 8 6 2.6759 -4.3365 0.8581 9 7 3.9874 -4.4150 0.8008 10 14 1.6424 -5.8898 0.7638 11 1 0.2035 -5.5328 0.8495 12 1 1.9054 -6.5820 -0.5233 13 1 1.9967 -6.7893 1.8911 14 6 1.6588 -0.2550 2.4198 15 8 2.4202 -0.3830 3.3585 16 6 0.3380 0.3788 2.6204 17 6 -0.1591 1.2915 1.6866 18 7 -1.3350 1.8612 1.8559 19 6 -2.0930 1.6033 2.9016 20 6 -1.6743 0.7021 3.8864 21 6 -2.5273 0.4187 5.0518 22 8 -2.1548 -0.3637 5.8999 23 6 -0.4307 0.0734 3.7457 24 1 -0.3634 -0.2891 0.9862 25 1 -0.3634 0.9986 -0.2428 26 1 -0.3635 -0.7095 -0.7434 27 1 1.8932 -0.5139 -0.8900 28 1 2.8667 1.5355 -0.7043 29 1 1.2333 2.1131 -0.2961 30 1 2.3833 1.7064 1.0002 31 1 3.4918 -1.7587 0.1536 32 1 3.5602 -1.9109 1.9258 33 1 4.4182 -5.2794 0.7106 34 1 0.4289 1.5336 0.8137 35 1 -3.0502 2.0938 3.0002 36 1 -3.4848 0.9084 5.1519 37 1 -0.0764 -0.6282 4.4863 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931326485.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:13:42 Heat of formation + Delta-G solvation = 49.706182 kcal Electronic energy + Delta-G solvation = -21766.187716 eV Core-core repulsion = 18512.610363 eV Total energy + Delta-G solvation = -3253.577352 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.52729 -39.29335 -38.29401 -36.60294 -33.61303 -32.59349 -32.02120 -30.95266 -27.44323 -27.18084 -25.39397 -24.66012 -22.61345 -22.06145 -21.61376 -18.71085 -17.62162 -17.17883 -16.59206 -16.45098 -15.70471 -15.32057 -14.92487 -14.78002 -14.68804 -14.19506 -14.04476 -13.95302 -13.43424 -13.11041 -12.57129 -12.38222 -12.14959 -11.98593 -11.77636 -11.32419 -11.23827 -10.93544 -10.74132 -10.52286 -10.38120 -10.21475 -9.90045 -9.72885 -9.60238 -9.16591 -8.63101 -8.52817 -7.74103 -6.13717 -4.20553 0.37576 1.00510 2.27952 3.04823 3.23505 3.31895 3.35129 3.59675 3.82081 4.00947 4.25406 4.35665 4.64966 4.66018 4.79974 4.87904 5.05606 5.08226 5.20670 5.24806 5.31441 5.46782 5.58235 5.66948 5.72357 5.94243 6.03818 6.08421 6.18497 6.34798 6.41202 6.97140 7.25467 7.32077 7.46182 7.68470 7.83110 8.11383 8.23000 8.64059 8.87802 9.45825 10.93661 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.016183 B = 0.006295 C = 0.005265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.753755 B = 4446.601617 C = 5317.126895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.133 3.867 3 C -0.186 4.186 4 N -0.605 5.605 5 C 0.248 3.752 6 C -0.536 4.536 7 H 0.059 0.941 8 C 0.064 3.936 9 N -0.891 5.891 10 Si 0.897 3.103 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.282 1.282 14 C 0.574 3.426 15 O -0.523 6.523 16 C -0.211 4.211 17 C 0.156 3.844 18 N -0.519 5.519 19 C 0.167 3.833 20 C -0.274 4.274 21 C 0.390 3.610 22 O -0.458 6.458 23 C 0.032 3.968 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.104 0.896 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.036 0.964 32 H 0.047 0.953 33 H 0.264 0.736 34 H 0.210 0.790 35 H 0.165 0.835 36 H 0.109 0.891 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.691 13.753 -1.277 18.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C 0.028 3.972 3 C -0.244 4.244 4 N -0.338 5.338 5 C 0.129 3.871 6 C -0.575 4.575 7 H 0.077 0.923 8 C -0.139 4.139 9 N -0.529 5.529 10 Si 0.724 3.276 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.208 1.208 14 C 0.360 3.640 15 O -0.399 6.399 16 C -0.217 4.217 17 C 0.002 3.998 18 N -0.229 5.229 19 C 0.010 3.990 20 C -0.277 4.277 21 C 0.247 3.753 22 O -0.330 6.330 23 C 0.007 3.993 24 H 0.104 0.896 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.122 0.878 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.225 0.775 35 H 0.182 0.818 36 H 0.126 0.874 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.172 13.677 -0.952 17.685 hybrid contribution -0.352 -1.672 0.352 1.745 sum -11.524 12.005 -0.600 16.652 Atomic orbital electron populations 1.23754 0.96597 1.02401 1.03780 1.21072 0.93093 0.92533 0.90502 1.22768 1.02050 0.95996 1.03550 1.48053 1.50827 1.31885 1.02991 1.19398 0.88962 0.79994 0.98721 1.21530 0.93538 0.91117 1.51326 0.92312 1.24934 0.94987 0.99079 0.94902 1.69938 1.08143 1.25304 1.49513 0.86460 0.80398 0.82965 0.77746 1.19789 1.20794 1.20772 1.17742 0.84780 0.77748 0.83691 1.90736 1.51988 1.54857 1.42321 1.21407 0.99054 1.03270 0.97947 1.25259 0.92366 0.86648 0.95549 1.67860 1.06026 1.26217 1.22793 1.23195 0.97791 0.90561 0.87484 1.21798 0.98932 1.05186 1.01806 1.23866 0.89726 0.79528 0.82172 1.90562 1.73752 1.28961 1.39741 1.21889 0.90651 0.92964 0.93818 0.89577 0.90154 0.91309 0.87800 0.90744 0.90877 0.91576 0.94632 0.93537 0.92596 0.77511 0.81768 0.87438 0.83361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.87 7.73 37.16 0.29 -2.58 16 2 C 0.13 2.05 3.27 -67.94 -0.22 1.82 16 3 C -0.19 -2.23 8.35 37.15 0.31 -1.92 16 4 N -0.60 -12.44 2.38 -168.58 -0.40 -12.84 16 5 C 0.25 6.27 5.31 -5.19 -0.03 6.24 16 6 C -0.54 -14.68 9.39 -34.44 -0.32 -15.00 16 7 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 10 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 14 C 0.57 12.07 5.91 -12.33 -0.07 12.00 16 15 O -0.52 -12.98 16.78 5.32 0.09 -12.89 16 16 C -0.21 -3.60 4.25 -104.88 -0.45 -4.04 16 17 C 0.16 2.16 5.87 -17.03 -0.10 2.06 16 18 N -0.52 -6.43 10.29 -17.16 -0.18 -6.60 16 19 C 0.17 1.73 10.95 -16.98 -0.19 1.55 16 20 C -0.27 -3.38 5.88 -104.96 -0.62 -4.00 16 21 C 0.39 4.15 11.48 34.36 0.39 4.54 16 22 O -0.46 -7.02 17.23 5.58 0.10 -6.93 16 23 C 0.03 0.52 9.36 -38.37 -0.36 0.16 16 24 H 0.09 1.38 3.96 -62.25 -0.25 1.13 16 25 H 0.08 0.89 5.39 -51.93 -0.28 0.61 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.10 1.60 7.81 -51.93 -0.41 1.20 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.67 6.20 -51.93 -0.32 0.34 16 30 H 0.07 0.89 6.82 -51.93 -0.35 0.54 16 31 H 0.04 0.90 7.94 -51.93 -0.41 0.49 16 32 H 0.05 1.34 7.35 -51.93 -0.38 0.96 16 33 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.21 2.57 1.06 -53.88 -0.06 2.51 16 35 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.11 0.58 8.06 -52.48 -0.42 0.16 16 37 H 0.15 2.67 7.73 -52.49 -0.41 2.26 16 LS Contribution 306.81 15.07 4.62 4.62 Total: -1.00 -34.10 306.81 -5.61 -39.72 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -4.10 Total: 1.12 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -1.46 Total: 2.51 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: 0.16 Total: -44.57 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: 0.19 Total: -19.81 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.10 -5.61 -39.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931326485.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.424 kcal (2) G-P(sol) polarization free energy of solvation -34.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds