Wall clock time and date at job start Mon Mar 30 2020 20:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47219 * 2 1 4 4 N 1.46500 * 109.47045 * 119.99980 * 2 1 3 5 5 C 1.46504 * 119.99929 * 122.06438 * 4 2 1 6 6 C 1.50701 * 109.47152 * 269.99982 * 5 4 2 7 7 H 1.08002 * 119.99830 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99975 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00253 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 119.99909 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46983 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47084 * 120.00054 * 10 8 6 13 13 H 1.48506 * 109.46843 * 240.00087 * 10 8 6 14 14 C 1.34767 * 120.00230 * 302.06352 * 4 2 1 15 15 O 1.21548 * 120.00317 * 211.56217 * 14 4 2 16 16 C 1.47859 * 120.00081 * 31.56214 * 14 4 2 17 17 C 1.39714 * 120.47356 * 317.95674 * 16 14 4 18 18 N 1.31755 * 120.94084 * 179.97438 * 17 16 14 19 19 C 1.31708 * 122.07496 * 0.02562 * 18 17 16 20 20 C 1.39907 * 120.84502 * 359.97438 * 19 18 17 21 21 C 1.47173 * 120.52276 * 180.02562 * 20 19 18 22 22 O 1.21253 * 120.00032 * 180.02562 * 21 20 19 23 23 C 1.39664 * 120.48162 * 137.93756 * 16 14 4 24 24 H 1.09005 * 109.47457 * 253.66409 * 1 2 3 25 25 H 1.09002 * 109.47214 * 13.66401 * 1 2 3 26 26 H 1.09005 * 109.47726 * 133.66203 * 1 2 3 27 27 H 1.09000 * 109.46695 * 239.99662 * 2 1 3 28 28 H 1.09001 * 109.47109 * 223.25832 * 3 2 1 29 29 H 1.09001 * 109.47615 * 343.25454 * 3 2 1 30 30 H 1.08998 * 109.47354 * 103.25886 * 3 2 1 31 31 H 1.09004 * 109.47070 * 29.99471 * 5 4 2 32 32 H 1.09000 * 109.47218 * 150.00110 * 5 4 2 33 33 H 0.97001 * 120.00474 * 179.97438 * 9 8 6 34 34 H 1.08001 * 119.53202 * 359.96157 * 17 16 14 35 35 H 1.08001 * 119.58081 * 179.97438 * 19 18 17 36 36 H 1.08007 * 120.00049 * 359.97438 * 21 20 19 37 37 H 1.07992 * 120.93144 * 359.97438 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8975 -1.8548 1.0622 6 6 2.0637 -3.1079 0.9867 7 1 0.9866 -3.0435 1.0334 8 6 2.6759 -4.3365 0.8581 9 7 3.9874 -4.4150 0.8008 10 14 1.6424 -5.8898 0.7638 11 1 0.2035 -5.5328 0.8495 12 1 1.9054 -6.5820 -0.5233 13 1 1.9967 -6.7893 1.8911 14 6 1.6588 -0.2550 2.4198 15 8 2.4202 -0.3830 3.3585 16 6 0.3380 0.3788 2.6204 17 6 -0.1591 1.2915 1.6866 18 7 -1.3350 1.8612 1.8559 19 6 -2.0930 1.6033 2.9016 20 6 -1.6743 0.7021 3.8864 21 6 -2.5273 0.4187 5.0518 22 8 -2.1548 -0.3637 5.8999 23 6 -0.4307 0.0734 3.7457 24 1 -0.3634 -0.2891 0.9862 25 1 -0.3634 0.9986 -0.2428 26 1 -0.3635 -0.7095 -0.7434 27 1 1.8932 -0.5139 -0.8900 28 1 2.8667 1.5355 -0.7043 29 1 1.2333 2.1131 -0.2961 30 1 2.3833 1.7064 1.0002 31 1 3.4918 -1.7587 0.1536 32 1 3.5602 -1.9109 1.9258 33 1 4.4182 -5.2794 0.7106 34 1 0.4289 1.5336 0.8137 35 1 -3.0502 2.0938 3.0002 36 1 -3.4848 0.9084 5.1519 37 1 -0.0764 -0.6282 4.4863 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931326485.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:13:42 Heat of formation + Delta-G solvation = 24.746209 kcal Electronic energy + Delta-G solvation = -21767.270061 eV Core-core repulsion = 18512.610363 eV Total energy + Delta-G solvation = -3254.659698 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.74839 -40.47890 -39.51456 -38.06311 -35.50372 -33.84711 -33.57745 -32.21307 -29.32200 -28.30485 -26.45939 -26.13944 -24.31379 -23.32566 -22.75697 -20.04228 -18.81523 -18.67025 -18.22819 -17.76518 -17.17828 -16.77222 -16.27104 -16.10421 -15.90185 -15.71423 -15.21261 -15.12575 -14.81386 -14.34106 -14.16346 -13.82287 -13.73561 -13.26168 -13.18252 -12.99544 -12.83508 -12.59693 -12.29157 -12.17317 -11.73941 -11.63595 -11.56506 -11.06999 -10.86024 -10.70917 -10.43134 -9.74159 -9.45630 -8.28595 -6.45187 -0.60392 -0.18153 1.30494 1.32482 1.35223 1.45706 1.58563 2.13145 2.33991 2.71990 3.00482 3.09381 3.33019 3.47482 3.59902 3.75676 3.76705 3.96540 4.09299 4.12420 4.24693 4.47098 4.52475 4.63781 4.74955 4.81588 4.90992 4.93345 5.03973 5.07274 5.14529 5.30248 5.40729 5.51253 5.80214 5.97945 6.45845 6.57232 6.64597 6.67259 7.03907 7.27737 8.78191 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.016183 B = 0.006295 C = 0.005265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.753755 B = 4446.601617 C = 5317.126895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.121 3.879 3 C -0.180 4.180 4 N -0.609 5.609 5 C 0.263 3.737 6 C -0.548 4.548 7 H 0.055 0.945 8 C 0.012 3.988 9 N -0.925 5.925 10 Si 0.966 3.034 11 H -0.268 1.268 12 H -0.266 1.266 13 H -0.282 1.282 14 C 0.568 3.432 15 O -0.583 6.583 16 C -0.238 4.238 17 C 0.173 3.827 18 N -0.515 5.515 19 C 0.196 3.804 20 C -0.278 4.278 21 C 0.401 3.599 22 O -0.514 6.514 23 C 0.008 3.992 24 H 0.067 0.933 25 H 0.118 0.882 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.115 0.885 30 H 0.047 0.953 31 H 0.029 0.971 32 H -0.003 1.003 33 H 0.269 0.731 34 H 0.222 0.778 35 H 0.229 0.771 36 H 0.185 0.815 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.779 15.807 -2.790 22.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.018 3.982 3 C -0.237 4.237 4 N -0.341 5.341 5 C 0.142 3.858 6 C -0.587 4.587 7 H 0.073 0.927 8 C -0.188 4.188 9 N -0.564 5.564 10 Si 0.790 3.210 11 H -0.192 1.192 12 H -0.191 1.191 13 H -0.208 1.208 14 C 0.357 3.643 15 O -0.463 6.463 16 C -0.243 4.243 17 C 0.018 3.982 18 N -0.225 5.225 19 C 0.039 3.961 20 C -0.281 4.281 21 C 0.262 3.738 22 O -0.389 6.389 23 C -0.018 4.018 24 H 0.085 0.915 25 H 0.136 0.864 26 H 0.090 0.910 27 H 0.118 0.882 28 H 0.106 0.894 29 H 0.133 0.867 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.016 0.984 33 H 0.078 0.922 34 H 0.237 0.763 35 H 0.245 0.755 36 H 0.200 0.800 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.292 15.773 -2.517 22.113 hybrid contribution 0.889 -2.238 0.832 2.548 sum -14.403 13.535 -1.686 19.836 Atomic orbital electron populations 1.23689 0.94759 1.04629 1.02747 1.21465 0.94708 0.94006 0.87987 1.22724 1.03957 0.94036 1.02998 1.48023 1.50272 1.30847 1.04952 1.18862 0.89020 0.81880 0.96037 1.21756 0.93444 0.92179 1.51312 0.92669 1.25838 0.96179 1.02461 0.94332 1.70053 1.09811 1.26358 1.50182 0.85394 0.78777 0.78637 0.78191 1.19176 1.19090 1.20832 1.18455 0.85961 0.77049 0.82842 1.90680 1.53987 1.57696 1.43978 1.21014 0.97315 1.05808 1.00189 1.25341 0.93003 0.85147 0.94672 1.68047 1.05211 1.25678 1.23532 1.24150 0.98866 0.88097 0.85005 1.22210 0.97348 1.04979 1.03540 1.24868 0.90993 0.78017 0.79894 1.90573 1.75127 1.31748 1.41500 1.21855 0.93083 0.93706 0.93177 0.91513 0.86418 0.91042 0.88164 0.89415 0.86710 0.93425 0.95267 0.98439 0.92230 0.76285 0.75473 0.79959 0.87054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.14 7.73 71.98 0.56 -4.59 16 2 C 0.12 3.71 3.27 44.99 0.15 3.85 16 3 C -0.18 -4.03 8.35 71.98 0.60 -3.43 16 4 N -0.61 -26.53 2.38 -805.54 -1.92 -28.45 16 5 C 0.26 14.29 5.31 85.63 0.46 14.75 16 6 C -0.55 -31.40 9.39 25.60 0.24 -31.16 16 7 H 0.06 3.13 7.81 -2.91 -0.02 3.10 16 8 C 0.01 0.66 5.46 84.65 0.46 1.12 16 9 N -0.92 -55.73 13.29 21.44 0.28 -55.45 16 10 Si 0.97 44.74 29.54 68.60 2.03 46.76 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 13 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 14 C 0.57 25.67 5.91 86.79 0.51 26.18 16 15 O -0.58 -31.95 16.78 -3.87 -0.06 -32.01 16 16 C -0.24 -8.31 4.25 -20.03 -0.09 -8.39 16 17 C 0.17 4.39 5.87 85.06 0.50 4.89 16 18 N -0.52 -10.35 10.29 -208.19 -2.14 -12.49 16 19 C 0.20 2.98 10.95 85.12 0.93 3.92 16 20 C -0.28 -6.15 5.88 -20.09 -0.12 -6.27 16 21 C 0.40 7.22 11.48 70.17 0.81 8.03 16 22 O -0.51 -15.54 17.23 -2.95 -0.05 -15.59 16 23 C 0.01 0.26 9.36 23.05 0.22 0.47 16 24 H 0.07 2.06 3.96 -12.08 -0.05 2.02 16 25 H 0.12 2.10 5.39 -2.39 -0.01 2.08 16 26 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 27 H 0.10 3.10 7.81 -2.39 -0.02 3.08 16 28 H 0.09 1.74 8.14 -2.39 -0.02 1.73 16 29 H 0.11 1.61 6.20 -2.39 -0.01 1.59 16 30 H 0.05 1.28 6.82 -2.39 -0.02 1.26 16 31 H 0.03 1.59 7.94 -2.39 -0.02 1.57 16 32 H 0.00 -0.16 7.35 -2.39 -0.02 -0.18 16 33 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 34 H 0.22 4.81 1.06 -4.22 0.00 4.81 16 35 H 0.23 0.63 8.06 -2.91 -0.02 0.60 16 36 H 0.18 0.68 8.06 -2.91 -0.02 0.65 16 37 H 0.11 4.49 7.73 -2.91 -0.02 4.46 16 Total: -1.00 -83.92 306.81 4.43 -79.50 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 1.07 Total: 8.35 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: 5.22 Total: 9.38 kcal Atomic # 7 Polarization: -92.61 SS G_CDS: -3.77 Total: -96.38 kcal Atomic # 8 Polarization: -47.49 SS G_CDS: -0.12 Total: -47.60 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -83.92 4.43 -79.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931326485.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.242 kcal (2) G-P(sol) polarization free energy of solvation -83.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds