Wall clock time and date at job start Mon Mar 30 2020 20:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47145 * 2 1 4 4 N 1.46502 * 109.46696 * 119.99758 * 2 1 3 5 5 C 1.46496 * 119.99559 * 123.72930 * 4 2 1 6 6 C 1.50706 * 109.47173 * 262.87998 * 5 4 2 7 7 H 1.08005 * 119.99618 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00008 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00245 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99817 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47024 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.46916 * 120.00156 * 10 8 6 13 13 H 1.48496 * 109.47101 * 239.99805 * 10 8 6 14 14 C 1.34774 * 120.00195 * 303.72775 * 4 2 1 15 15 O 1.21493 * 119.99654 * 3.18817 * 14 4 2 16 16 C 1.48356 * 120.00121 * 183.19290 * 14 4 2 17 17 C 1.39322 * 119.54693 * 172.93570 * 16 14 4 18 18 C 1.38393 * 119.22418 * 179.97438 * 17 16 14 19 19 C 1.40123 * 118.33155 * 0.02562 * 18 17 16 20 20 C 1.47366 * 120.48952 * 179.97438 * 19 18 17 21 21 O 1.21231 * 119.99746 * 179.97438 * 20 19 18 22 22 C 1.39981 * 119.02151 * 359.97438 * 19 18 17 23 23 N 1.31381 * 120.67765 * 359.74169 * 22 19 18 24 24 H 1.08995 * 109.47240 * 305.55457 * 1 2 3 25 25 H 1.09008 * 109.47107 * 65.55646 * 1 2 3 26 26 H 1.08994 * 109.47140 * 185.55055 * 1 2 3 27 27 H 1.09002 * 109.47046 * 239.99651 * 2 1 3 28 28 H 1.08998 * 109.47343 * 184.91735 * 3 2 1 29 29 H 1.09010 * 109.46890 * 304.91831 * 3 2 1 30 30 H 1.08993 * 109.47542 * 64.91432 * 3 2 1 31 31 H 1.09002 * 109.47742 * 22.88140 * 5 4 2 32 32 H 1.09004 * 109.46827 * 142.88280 * 5 4 2 33 33 H 0.97006 * 120.00463 * 179.97438 * 9 8 6 34 34 H 1.08005 * 120.38218 * 359.95248 * 17 16 14 35 35 H 1.08000 * 120.83723 * 180.02562 * 18 17 16 36 36 H 1.07994 * 120.00155 * 0.02562 * 20 19 18 37 37 H 1.08003 * 119.66085 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.9266 -1.8323 1.0634 6 6 2.1372 -3.1138 1.1401 7 1 1.0660 -3.0810 1.2740 8 6 2.7826 -4.3280 1.0394 9 7 4.0870 -4.3679 0.8768 10 14 1.8040 -5.9164 1.1338 11 1 0.3646 -5.6009 1.3171 12 1 1.9856 -6.6851 -0.1239 13 1 2.2841 -6.7260 2.2823 14 6 1.6319 -0.2756 2.4189 15 8 0.8336 0.6339 2.5274 16 6 2.1813 -0.9291 3.6321 17 6 1.8924 -0.3999 4.8881 18 6 2.4080 -1.0153 6.0154 19 6 3.2063 -2.1542 5.8450 20 6 3.7802 -2.8466 7.0125 21 8 4.4692 -3.8315 6.8548 22 6 3.4506 -2.6246 4.5494 23 7 2.9367 -2.0132 3.5063 24 1 -0.3633 0.5975 0.8360 25 1 -0.3634 0.4253 -0.9356 26 1 -0.3633 -1.0228 0.0994 27 1 1.8934 -0.5139 -0.8900 28 1 3.1264 1.4437 -0.0881 29 1 1.6065 1.9811 -0.8427 30 1 1.7504 1.9303 0.9306 31 1 3.4398 -1.7786 0.1032 32 1 3.6602 -1.8086 1.8693 33 1 4.5411 -5.2222 0.8063 34 1 1.2737 0.4804 4.9808 35 1 2.2004 -0.6274 7.0018 36 1 3.5862 -2.4771 8.0085 37 1 4.0648 -3.5014 4.4061 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931327974.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:13:45 Heat of formation + Delta-G solvation = -11.457795 kcal Electronic energy + Delta-G solvation = -21781.013726 eV Core-core repulsion = 18524.784105 eV Total energy + Delta-G solvation = -3256.229621 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.41824 -39.15784 -38.08698 -35.49523 -33.34550 -32.40816 -31.49649 -30.71394 -26.93417 -26.66447 -25.62250 -23.54898 -22.85650 -22.06173 -20.98002 -19.00692 -17.04909 -16.68321 -16.22962 -16.10476 -15.27619 -14.99141 -14.64479 -14.46867 -14.24490 -14.11691 -13.80351 -13.18081 -13.05560 -12.96663 -12.56363 -12.32219 -12.11970 -11.72413 -11.46450 -11.35033 -10.88603 -10.86967 -10.70744 -10.49269 -10.09125 -9.94182 -9.69177 -9.55437 -9.15347 -8.89437 -8.56722 -8.11342 -7.63082 -5.99753 -3.98700 0.46962 1.53564 2.38171 3.29274 3.37426 3.38668 3.43673 3.73798 4.19663 4.32999 4.45751 4.73550 4.89465 5.04824 5.12801 5.36543 5.38951 5.45522 5.64377 5.66057 5.80182 6.02003 6.05915 6.11806 6.16595 6.21596 6.32488 6.40658 6.69060 6.77710 6.83306 6.93885 7.39763 7.54405 7.77217 7.92315 8.24746 8.30583 8.35456 8.88236 9.03785 9.61192 11.08401 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.011946 B = 0.008982 C = 0.005716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.337803 B = 3116.621129 C = 4897.237752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.143 3.857 3 C -0.164 4.164 4 N -0.566 5.566 5 C 0.226 3.774 6 C -0.496 4.496 7 H 0.051 0.949 8 C 0.069 3.931 9 N -0.889 5.889 10 Si 0.882 3.118 11 H -0.276 1.276 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.562 3.438 15 O -0.564 6.564 16 C 0.114 3.886 17 C -0.140 4.140 18 C -0.047 4.047 19 C -0.243 4.243 20 C 0.388 3.612 21 O -0.455 6.455 22 C 0.154 3.846 23 N -0.388 5.388 24 H 0.078 0.922 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.086 0.914 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.024 0.976 32 H 0.083 0.917 33 H 0.260 0.740 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.104 0.896 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.105 8.202 7.608 11.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.039 3.961 3 C -0.222 4.222 4 N -0.294 5.294 5 C 0.107 3.893 6 C -0.535 4.535 7 H 0.069 0.931 8 C -0.133 4.133 9 N -0.529 5.529 10 Si 0.711 3.289 11 H -0.201 1.201 12 H -0.211 1.211 13 H -0.210 1.210 14 C 0.349 3.651 15 O -0.445 6.445 16 C -0.024 4.024 17 C -0.161 4.161 18 C -0.073 4.073 19 C -0.246 4.246 20 C 0.245 3.755 21 O -0.328 6.328 22 C -0.005 4.005 23 N -0.097 5.097 24 H 0.096 0.904 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.104 0.896 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.042 0.958 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.163 0.837 35 H 0.159 0.841 36 H 0.120 0.880 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -1.820 7.681 6.638 10.313 hybrid contribution -0.742 -0.827 0.795 1.366 sum -2.562 6.854 7.433 10.430 Atomic orbital electron populations 1.22195 0.95373 1.02678 1.02104 1.20974 0.94502 0.92416 0.88196 1.22163 1.00659 0.96684 1.02672 1.48417 1.45692 1.31622 1.03687 1.20191 0.89258 0.81076 0.98820 1.21253 0.93489 0.90413 1.48361 0.93082 1.24745 0.94671 0.98344 0.95540 1.69919 1.07395 1.25454 1.50124 0.86695 0.80380 0.84220 0.77652 1.20087 1.21101 1.21001 1.17879 0.81629 0.82499 0.83132 1.90612 1.35612 1.31588 1.86684 1.21748 0.94415 0.92481 0.93784 1.22008 1.00583 1.01617 0.91925 1.21641 0.93446 0.93024 0.99159 1.22164 1.04437 1.00024 0.98012 1.23973 0.76196 0.82405 0.92888 1.90545 1.29535 1.23224 1.89451 1.23530 0.93450 0.97221 0.86291 1.68976 1.05187 1.04785 1.30802 0.90358 0.92993 0.92526 0.89559 0.93021 0.92354 0.91244 0.95785 0.89963 0.93038 0.83658 0.84057 0.87984 0.81593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 8.94 37.16 0.33 -2.55 16 2 C 0.14 2.62 3.27 -67.93 -0.22 2.40 16 3 C -0.16 -2.60 9.23 37.15 0.34 -2.25 16 4 N -0.57 -12.00 2.43 -168.38 -0.41 -12.41 16 5 C 0.23 5.44 4.76 -5.19 -0.02 5.41 16 6 C -0.50 -13.02 7.95 -34.44 -0.27 -13.30 16 7 H 0.05 1.40 7.81 -52.48 -0.41 0.99 16 8 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 9 N -0.89 -24.64 13.29 55.43 0.74 -23.90 16 10 Si 0.88 21.26 29.54 -169.99 -5.02 16.24 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 C 0.56 11.69 6.98 -12.10 -0.08 11.61 16 15 O -0.56 -11.74 12.62 5.37 0.07 -11.68 16 16 C 0.11 2.22 6.63 -82.91 -0.55 1.67 16 17 C -0.14 -2.14 9.61 -39.12 -0.38 -2.51 16 18 C -0.05 -0.57 9.94 -38.82 -0.39 -0.96 16 19 C -0.24 -3.45 5.89 -104.82 -0.62 -4.07 16 20 C 0.39 4.66 11.49 34.44 0.40 5.06 16 21 O -0.46 -7.39 17.19 5.60 0.10 -7.29 16 22 C 0.15 2.86 10.76 -17.09 -0.18 2.67 16 23 N -0.39 -8.11 4.95 -9.41 -0.05 -8.16 16 24 H 0.08 1.45 6.02 -51.93 -0.31 1.14 16 25 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.09 1.57 7.73 -51.93 -0.40 1.17 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.78 8.14 -51.92 -0.42 0.35 16 30 H 0.07 1.19 6.45 -51.93 -0.33 0.86 16 31 H 0.02 0.61 7.81 -51.93 -0.41 0.21 16 32 H 0.08 2.08 5.25 -52.21 -0.27 1.80 16 33 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.15 2.00 7.64 -52.48 -0.40 1.60 16 35 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.10 0.72 8.06 -52.49 -0.42 0.29 16 37 H 0.17 3.25 7.65 -52.48 -0.40 2.85 16 LS Contribution 315.60 15.07 4.76 4.76 Total: -1.00 -30.67 315.60 -6.18 -36.84 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -4.61 Total: 0.68 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -1.74 Total: 4.92 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: 0.28 Total: -44.47 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: 0.16 Total: -18.97 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.67 -6.18 -36.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931327974.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.387 kcal (2) G-P(sol) polarization free energy of solvation -30.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds