Wall clock time and date at job start Mon Mar 30 2020 20:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47145 * 2 1 4 4 N 1.46502 * 109.46696 * 119.99758 * 2 1 3 5 5 C 1.46496 * 119.99559 * 123.72930 * 4 2 1 6 6 C 1.50706 * 109.47173 * 262.87998 * 5 4 2 7 7 H 1.08005 * 119.99618 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00008 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00245 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99817 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47024 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.46916 * 120.00156 * 10 8 6 13 13 H 1.48496 * 109.47101 * 239.99805 * 10 8 6 14 14 C 1.34774 * 120.00195 * 303.72775 * 4 2 1 15 15 O 1.21493 * 119.99654 * 3.18817 * 14 4 2 16 16 C 1.48356 * 120.00121 * 183.19290 * 14 4 2 17 17 C 1.39322 * 119.54693 * 172.93570 * 16 14 4 18 18 C 1.38393 * 119.22418 * 179.97438 * 17 16 14 19 19 C 1.40123 * 118.33155 * 0.02562 * 18 17 16 20 20 C 1.47366 * 120.48952 * 179.97438 * 19 18 17 21 21 O 1.21231 * 119.99746 * 179.97438 * 20 19 18 22 22 C 1.39981 * 119.02151 * 359.97438 * 19 18 17 23 23 N 1.31381 * 120.67765 * 359.74169 * 22 19 18 24 24 H 1.08995 * 109.47240 * 305.55457 * 1 2 3 25 25 H 1.09008 * 109.47107 * 65.55646 * 1 2 3 26 26 H 1.08994 * 109.47140 * 185.55055 * 1 2 3 27 27 H 1.09002 * 109.47046 * 239.99651 * 2 1 3 28 28 H 1.08998 * 109.47343 * 184.91735 * 3 2 1 29 29 H 1.09010 * 109.46890 * 304.91831 * 3 2 1 30 30 H 1.08993 * 109.47542 * 64.91432 * 3 2 1 31 31 H 1.09002 * 109.47742 * 22.88140 * 5 4 2 32 32 H 1.09004 * 109.46827 * 142.88280 * 5 4 2 33 33 H 0.97006 * 120.00463 * 179.97438 * 9 8 6 34 34 H 1.08005 * 120.38218 * 359.95248 * 17 16 14 35 35 H 1.08000 * 120.83723 * 180.02562 * 18 17 16 36 36 H 1.07994 * 120.00155 * 0.02562 * 20 19 18 37 37 H 1.08003 * 119.66085 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.9266 -1.8323 1.0634 6 6 2.1372 -3.1138 1.1401 7 1 1.0660 -3.0810 1.2740 8 6 2.7826 -4.3280 1.0394 9 7 4.0870 -4.3679 0.8768 10 14 1.8040 -5.9164 1.1338 11 1 0.3646 -5.6009 1.3171 12 1 1.9856 -6.6851 -0.1239 13 1 2.2841 -6.7260 2.2823 14 6 1.6319 -0.2756 2.4189 15 8 0.8336 0.6339 2.5274 16 6 2.1813 -0.9291 3.6321 17 6 1.8924 -0.3999 4.8881 18 6 2.4080 -1.0153 6.0154 19 6 3.2063 -2.1542 5.8450 20 6 3.7802 -2.8466 7.0125 21 8 4.4692 -3.8315 6.8548 22 6 3.4506 -2.6246 4.5494 23 7 2.9367 -2.0132 3.5063 24 1 -0.3633 0.5975 0.8360 25 1 -0.3634 0.4253 -0.9356 26 1 -0.3633 -1.0228 0.0994 27 1 1.8934 -0.5139 -0.8900 28 1 3.1264 1.4437 -0.0881 29 1 1.6065 1.9811 -0.8427 30 1 1.7504 1.9303 0.9306 31 1 3.4398 -1.7786 0.1032 32 1 3.6602 -1.8086 1.8693 33 1 4.5411 -5.2222 0.8063 34 1 1.2737 0.4804 4.9808 35 1 2.2004 -0.6274 7.0018 36 1 3.5862 -2.4771 8.0085 37 1 4.0648 -3.5014 4.4061 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931327974.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:13:45 Heat of formation + Delta-G solvation = -30.386432 kcal Electronic energy + Delta-G solvation = -21781.834533 eV Core-core repulsion = 18524.784105 eV Total energy + Delta-G solvation = -3257.050429 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.79005 -40.50321 -39.33858 -37.11643 -35.03419 -33.97523 -32.96930 -32.09757 -28.84148 -28.03177 -26.91248 -25.01347 -24.50249 -23.50980 -22.19304 -20.44117 -18.62320 -18.21093 -17.95032 -17.36612 -16.64627 -16.49481 -16.25349 -16.01226 -15.66510 -15.39144 -15.13922 -14.57374 -14.45992 -14.37661 -14.11342 -13.89950 -13.64661 -13.30444 -13.06789 -12.82466 -12.74408 -12.64069 -12.19914 -12.13045 -11.89848 -11.57148 -11.05048 -10.89402 -10.70913 -10.49529 -10.20377 -9.67808 -9.32271 -8.07159 -6.11815 -0.74846 0.36261 1.23840 1.33975 1.37648 1.45636 2.00381 2.24072 2.45111 2.96709 3.17061 3.26889 3.42285 3.72832 3.87939 3.99545 4.07721 4.22655 4.25704 4.38298 4.63035 4.71739 4.79441 4.80350 4.91479 4.95764 4.99806 5.03943 5.15044 5.30392 5.39374 5.49201 5.62788 5.89761 6.00055 6.26905 6.47227 6.56663 6.88185 7.00377 7.33058 7.52113 9.00084 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.011946 B = 0.008982 C = 0.005716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.337803 B = 3116.621129 C = 4897.237752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.129 3.871 3 C -0.151 4.151 4 N -0.577 5.577 5 C 0.243 3.757 6 C -0.493 4.493 7 H 0.032 0.968 8 C 0.030 3.970 9 N -0.916 5.916 10 Si 0.933 3.067 11 H -0.278 1.278 12 H -0.278 1.278 13 H -0.284 1.284 14 C 0.557 3.443 15 O -0.568 6.568 16 C 0.075 3.925 17 C -0.133 4.133 18 C -0.013 4.013 19 C -0.233 4.233 20 C 0.402 3.598 21 O -0.502 6.502 22 C 0.122 3.878 23 N -0.432 5.432 24 H 0.067 0.933 25 H 0.084 0.916 26 H 0.032 0.968 27 H 0.081 0.919 28 H 0.050 0.950 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.002 0.998 32 H 0.074 0.926 33 H 0.260 0.740 34 H 0.164 0.836 35 H 0.210 0.790 36 H 0.180 0.820 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.183 9.574 10.211 14.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.027 3.973 3 C -0.209 4.209 4 N -0.305 5.305 5 C 0.123 3.877 6 C -0.532 4.532 7 H 0.051 0.949 8 C -0.169 4.169 9 N -0.557 5.557 10 Si 0.761 3.239 11 H -0.203 1.203 12 H -0.204 1.204 13 H -0.210 1.210 14 C 0.344 3.656 15 O -0.450 6.450 16 C -0.062 4.062 17 C -0.153 4.153 18 C -0.038 4.038 19 C -0.236 4.236 20 C 0.262 3.738 21 O -0.377 6.377 22 C -0.038 4.038 23 N -0.142 5.142 24 H 0.086 0.914 25 H 0.103 0.897 26 H 0.051 0.949 27 H 0.099 0.901 28 H 0.069 0.931 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.020 0.980 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.182 0.818 35 H 0.227 0.773 36 H 0.196 0.804 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.921 9.077 9.233 13.272 hybrid contribution -0.427 -1.183 0.094 1.261 sum -3.348 7.894 9.326 12.669 Atomic orbital electron populations 1.22089 0.94524 1.01169 1.03401 1.21250 0.95230 0.93706 0.87158 1.22048 1.00678 0.94861 1.03269 1.48399 1.45752 1.31292 1.05055 1.19761 0.89370 0.81547 0.97051 1.21263 0.92534 0.91603 1.47785 0.94922 1.25284 0.95361 1.00685 0.95553 1.70004 1.08415 1.25890 1.51367 0.85893 0.78986 0.81367 0.77674 1.20316 1.20399 1.21007 1.18234 0.81379 0.82455 0.83513 1.90582 1.35748 1.31790 1.86913 1.21749 0.96323 0.93307 0.94869 1.22313 1.00048 1.01824 0.91146 1.22279 0.90000 0.90597 1.00916 1.22566 1.03599 1.00357 0.97082 1.24899 0.73927 0.80751 0.94220 1.90560 1.31648 1.25506 1.89976 1.23283 0.94747 0.97426 0.88382 1.68605 1.06573 1.06101 1.32938 0.91369 0.89704 0.94879 0.90050 0.93123 0.89294 0.92474 0.98040 0.90908 0.93097 0.81817 0.77330 0.80393 0.84475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.35 8.94 71.98 0.64 -4.70 16 2 C 0.13 4.82 3.27 44.99 0.15 4.97 16 3 C -0.15 -4.68 9.23 71.98 0.66 -4.01 16 4 N -0.58 -25.40 2.43 -804.95 -1.95 -27.35 16 5 C 0.24 12.39 4.76 85.64 0.41 12.80 16 6 C -0.49 -27.08 7.95 25.60 0.20 -26.88 16 7 H 0.03 1.88 7.81 -2.91 -0.02 1.85 16 8 C 0.03 1.67 5.46 84.65 0.46 2.14 16 9 N -0.92 -52.83 13.29 21.44 0.28 -52.54 16 10 Si 0.93 44.89 29.54 68.60 2.03 46.91 16 11 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 13 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 14 C 0.56 23.61 6.98 86.94 0.61 24.22 16 15 O -0.57 -23.62 12.62 -3.69 -0.05 -23.67 16 16 C 0.08 2.93 6.63 41.96 0.28 3.21 16 17 C -0.13 -3.68 9.61 22.57 0.22 -3.46 16 18 C -0.01 -0.25 9.94 22.76 0.23 -0.02 16 19 C -0.23 -5.99 5.89 -19.99 -0.12 -6.11 16 20 C 0.40 8.03 11.49 70.22 0.81 8.84 16 21 O -0.50 -15.57 17.19 -2.88 -0.05 -15.62 16 22 C 0.12 4.63 10.76 85.18 0.92 5.55 16 23 N -0.43 -18.79 4.95 -183.68 -0.91 -19.70 16 24 H 0.07 2.50 6.02 -2.39 -0.01 2.49 16 25 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 26 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.08 3.06 7.73 -2.39 -0.02 3.04 16 28 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 30 H 0.06 1.92 6.45 -2.39 -0.02 1.90 16 31 H 0.00 0.09 7.81 -2.39 -0.02 0.07 16 32 H 0.07 3.92 5.25 -2.95 -0.02 3.91 16 33 H 0.26 14.37 8.31 -92.70 -0.77 13.60 16 34 H 0.16 3.93 7.64 -2.91 -0.02 3.91 16 35 H 0.21 1.31 8.06 -2.91 -0.02 1.28 16 36 H 0.18 1.10 8.06 -2.91 -0.02 1.07 16 37 H 0.14 5.83 7.65 -2.91 -0.02 5.81 16 Total: -1.00 -72.92 315.60 5.89 -67.03 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 1.08 Total: 8.40 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: 5.46 Total: 16.54 kcal Atomic # 7 Polarization: -97.02 SS G_CDS: -2.58 Total: -99.60 kcal Atomic # 8 Polarization: -39.19 SS G_CDS: -0.10 Total: -39.29 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -72.92 5.89 -67.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931327974.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.643 kcal (2) G-P(sol) polarization free energy of solvation -72.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds