Wall clock time and date at job start Mon Mar 30 2020 20:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 119.99869 * 2 1 4 4 N 1.46496 * 109.47280 * 125.00269 * 3 2 1 5 5 C 1.46497 * 120.00149 * 262.21413 * 4 3 2 6 6 C 1.50698 * 109.47381 * 269.99881 * 5 4 3 7 7 H 1.07998 * 119.99648 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00054 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00114 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99846 * 180.02562 * 8 6 5 11 11 H 1.48490 * 109.47399 * 59.99453 * 10 8 6 12 12 H 1.48503 * 109.47034 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47056 * 299.99234 * 10 8 6 14 14 C 1.34785 * 119.99824 * 82.21481 * 4 3 2 15 15 O 1.21613 * 119.99639 * 182.14105 * 14 4 3 16 16 C 1.47396 * 119.99829 * 2.13954 * 14 4 3 17 17 C 1.47098 * 128.56847 * 351.66288 * 16 14 4 18 18 N 1.30011 * 105.33086 * 180.26050 * 17 16 14 19 19 O 1.20653 * 112.30318 * 359.97438 * 18 17 16 20 20 C 1.33493 * 113.15706 * 359.97438 * 19 18 17 21 21 C 1.50698 * 126.83152 * 179.97438 * 20 19 18 22 22 C 1.53000 * 117.49792 * 8.77482 * 21 20 19 23 23 C 1.53008 * 117.49973 * 300.11560 * 21 20 19 24 24 H 1.07995 * 120.00318 * 359.97438 * 1 2 3 25 25 H 1.08001 * 119.99951 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.99980 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.47186 * 4.99835 * 3 2 1 28 28 H 1.09004 * 109.47041 * 245.00720 * 3 2 1 29 29 H 1.08998 * 109.46842 * 30.00319 * 5 4 3 30 30 H 1.09000 * 109.47069 * 149.99395 * 5 4 3 31 31 H 0.96998 * 119.99462 * 180.02562 * 9 8 6 32 32 H 1.08001 * 127.33625 * 0.22773 * 17 16 14 33 33 H 1.08999 * 115.55058 * 154.44957 * 21 20 19 34 34 H 1.08992 * 117.49907 * 0.02562 * 22 21 20 35 35 H 1.09007 * 117.49718 * 145.01786 * 22 21 20 36 36 H 1.08999 * 117.49910 * 214.97697 * 23 21 20 37 37 H 1.08998 * 117.49775 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1313 5 6 2.6198 2.0169 2.3711 6 6 3.0585 3.4569 2.3015 7 1 3.5656 3.8249 1.4219 8 6 2.8135 4.3042 3.3612 9 7 2.1964 3.8559 4.4326 10 14 3.3567 6.0894 3.2746 11 1 2.6938 6.7533 2.1236 12 1 2.9777 6.7837 4.5314 13 1 4.8302 6.1505 3.0998 14 6 4.1938 0.7264 1.0315 15 8 4.9502 0.7151 1.9838 16 6 4.5892 0.0779 -0.2317 17 6 3.7738 -0.1674 -1.4311 18 7 4.5661 -0.7686 -2.2684 19 8 5.6734 -0.9284 -1.8167 20 6 5.8090 -0.4506 -0.5776 21 6 7.0522 -0.4862 0.2733 22 6 8.3515 -0.9430 -0.3930 23 6 7.6409 -1.8585 0.6071 24 1 -0.5400 0.9352 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3585 2.1316 0.0895 28 1 2.6212 1.4027 -0.9315 29 1 1.5382 1.9723 2.4988 30 1 3.1057 1.5294 3.2163 31 1 2.0237 4.4522 5.1779 32 1 2.7374 0.0954 -1.5836 33 1 7.1231 0.2905 1.0348 34 1 8.3072 -1.2174 -1.4469 35 1 9.2773 -0.4670 -0.0697 36 1 8.0994 -1.9844 1.5879 37 1 7.1287 -2.7356 0.2115 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117763299.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:13:48 Heat of formation + Delta-G solvation = 93.714242 kcal Electronic energy + Delta-G solvation = -21427.525096 eV Core-core repulsion = 18175.856077 eV Total energy + Delta-G solvation = -3251.669020 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.78373 -39.11408 -37.40193 -35.90246 -33.76760 -33.03575 -32.11417 -31.39512 -27.86916 -26.00871 -24.52883 -23.94084 -22.59291 -22.34960 -21.05133 -19.81171 -18.78657 -17.59446 -17.16475 -16.71532 -16.49949 -15.65306 -15.36318 -15.02995 -14.34927 -14.26213 -13.90396 -13.52870 -12.98663 -12.67733 -12.29530 -12.22845 -11.69574 -11.53267 -11.51540 -11.33926 -11.14498 -11.11400 -10.94244 -10.62516 -10.50614 -10.23014 -10.21774 -9.69926 -9.30435 -9.20869 -9.04155 -8.46636 -7.77305 -6.07989 -4.13330 1.24932 1.94221 2.30680 2.88933 3.29835 3.34345 3.36972 3.62848 3.81534 3.92909 4.29886 4.38628 4.48359 4.68242 4.77336 4.85553 5.00553 5.19018 5.26463 5.30546 5.38694 5.50094 5.52747 5.63138 5.78431 5.88802 5.95192 5.97910 6.08920 6.12174 6.68936 6.79695 7.01060 7.38036 7.45958 7.87825 8.17633 8.24067 8.30769 8.81966 8.97837 9.51879 10.99987 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.015891 B = 0.005928 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.585393 B = 4722.276142 C = 5839.681270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.184 4.184 3 C 0.120 3.880 4 N -0.580 5.580 5 C 0.248 3.752 6 C -0.530 4.530 7 H 0.058 0.942 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.585 3.415 15 O -0.530 6.530 16 C -0.238 4.238 17 C 0.002 3.998 18 N -0.363 5.363 19 O 0.086 5.914 20 C 0.063 3.937 21 C -0.081 4.081 22 C -0.170 4.170 23 C -0.156 4.156 24 H 0.101 0.899 25 H 0.096 0.904 26 H 0.107 0.893 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.035 0.965 30 H 0.047 0.953 31 H 0.264 0.736 32 H 0.217 0.783 33 H 0.153 0.847 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.998 -9.721 -10.910 15.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.203 4.203 3 C -0.004 4.004 4 N -0.310 5.310 5 C 0.130 3.870 6 C -0.569 4.569 7 H 0.076 0.924 8 C -0.139 4.139 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.202 1.202 14 C 0.372 3.628 15 O -0.409 6.409 16 C -0.246 4.246 17 C -0.179 4.179 18 N -0.069 5.069 19 O 0.026 5.974 20 C -0.001 4.001 21 C -0.100 4.100 22 C -0.207 4.207 23 C -0.193 4.193 24 H 0.120 0.880 25 H 0.115 0.885 26 H 0.125 0.875 27 H 0.112 0.888 28 H 0.100 0.900 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.233 0.767 33 H 0.170 0.830 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.190 -10.118 -11.426 15.827 hybrid contribution -0.199 1.401 0.677 1.568 sum 3.991 -8.717 -10.750 14.404 Atomic orbital electron populations 1.23880 0.95693 1.02012 0.99218 1.23521 0.96584 0.99130 1.01052 1.21061 0.93250 0.95555 0.90512 1.48016 1.14092 1.52334 1.16560 1.19355 0.96111 0.91458 0.80097 1.21389 1.38470 0.94499 1.02506 0.92422 1.24920 0.95019 0.98945 0.95045 1.69925 1.41340 1.36048 1.05896 0.86559 0.79262 0.84319 0.77295 1.20227 1.21129 1.20154 1.16752 0.82402 0.78701 0.84967 1.90755 1.51429 1.60479 1.38201 1.22408 0.93765 1.10075 0.98333 1.27407 1.02482 0.98671 0.89356 1.73651 0.91863 1.18808 1.22563 1.84473 1.26481 1.60751 1.25685 1.23665 0.96284 0.94738 0.85414 1.20675 0.87282 1.01898 1.00160 1.23117 0.95191 1.03281 0.99110 1.23068 1.02514 0.92616 1.01114 0.88031 0.88531 0.87461 0.88783 0.90020 0.94691 0.93530 0.92595 0.76709 0.82958 0.87981 0.87537 0.87318 0.88404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 14.32 29.01 0.42 -1.66 16 2 C -0.18 -2.55 7.74 -36.03 -0.28 -2.83 16 3 C 0.12 1.95 5.39 -5.20 -0.03 1.92 16 4 N -0.58 -12.27 2.46 -177.72 -0.44 -12.71 16 5 C 0.25 6.38 5.14 -5.20 -0.03 6.36 16 6 C -0.53 -14.74 9.39 -34.44 -0.32 -15.07 16 7 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 10 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.59 12.46 7.59 -12.53 -0.10 12.37 16 15 O -0.53 -12.98 15.01 5.27 0.08 -12.90 16 16 C -0.24 -4.15 6.19 -102.90 -0.64 -4.79 16 17 C 0.00 0.03 9.12 -14.73 -0.13 -0.11 16 18 N -0.36 -5.51 12.01 31.80 0.38 -5.13 16 19 O 0.09 1.27 10.86 18.65 0.20 1.47 16 20 C 0.06 0.98 7.00 -34.63 -0.24 0.73 16 21 C -0.08 -1.11 5.69 -91.77 -0.52 -1.63 16 22 C -0.17 -1.69 10.19 -26.69 -0.27 -1.97 16 23 C -0.16 -1.67 10.24 -26.69 -0.27 -1.94 16 24 H 0.10 1.19 7.84 -52.49 -0.41 0.78 16 25 H 0.10 1.01 8.06 -52.49 -0.42 0.59 16 26 H 0.11 1.49 7.19 -52.49 -0.38 1.11 16 27 H 0.09 1.54 7.67 -51.93 -0.40 1.14 16 28 H 0.08 1.18 4.69 -51.93 -0.24 0.94 16 29 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 30 H 0.05 1.35 7.39 -51.93 -0.38 0.96 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.22 2.74 4.03 -52.49 -0.21 2.52 16 33 H 0.15 2.36 7.12 -51.93 -0.37 1.99 16 34 H 0.10 0.95 8.02 -51.93 -0.42 0.53 16 35 H 0.11 0.89 8.14 -51.92 -0.42 0.47 16 36 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 318.57 15.07 4.80 4.80 Total: -1.00 -31.77 318.57 -6.24 -38.01 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -4.47 Total: 2.24 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -2.52 Total: -6.93 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 0.68 Total: -43.22 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.28 Total: -11.43 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.77 -6.24 -38.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117763299.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.725 kcal (2) G-P(sol) polarization free energy of solvation -31.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds