Wall clock time and date at job start Mon Mar 30 2020 20:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 119.99869 * 2 1 4 4 N 1.46496 * 109.47280 * 125.00269 * 3 2 1 5 5 C 1.46497 * 120.00149 * 262.21413 * 4 3 2 6 6 C 1.50698 * 109.47381 * 269.99881 * 5 4 3 7 7 H 1.07998 * 119.99648 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00054 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00114 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99846 * 180.02562 * 8 6 5 11 11 H 1.48490 * 109.47399 * 59.99453 * 10 8 6 12 12 H 1.48503 * 109.47034 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47056 * 299.99234 * 10 8 6 14 14 C 1.34785 * 119.99824 * 82.21481 * 4 3 2 15 15 O 1.21613 * 119.99639 * 182.14105 * 14 4 3 16 16 C 1.47396 * 119.99829 * 2.13954 * 14 4 3 17 17 C 1.47098 * 128.56847 * 351.66288 * 16 14 4 18 18 N 1.30011 * 105.33086 * 180.26050 * 17 16 14 19 19 O 1.20653 * 112.30318 * 359.97438 * 18 17 16 20 20 C 1.33493 * 113.15706 * 359.97438 * 19 18 17 21 21 C 1.50698 * 126.83152 * 179.97438 * 20 19 18 22 22 C 1.53000 * 117.49792 * 8.77482 * 21 20 19 23 23 C 1.53008 * 117.49973 * 300.11560 * 21 20 19 24 24 H 1.07995 * 120.00318 * 359.97438 * 1 2 3 25 25 H 1.08001 * 119.99951 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.99980 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.47186 * 4.99835 * 3 2 1 28 28 H 1.09004 * 109.47041 * 245.00720 * 3 2 1 29 29 H 1.08998 * 109.46842 * 30.00319 * 5 4 3 30 30 H 1.09000 * 109.47069 * 149.99395 * 5 4 3 31 31 H 0.96998 * 119.99462 * 180.02562 * 9 8 6 32 32 H 1.08001 * 127.33625 * 0.22773 * 17 16 14 33 33 H 1.08999 * 115.55058 * 154.44957 * 21 20 19 34 34 H 1.08992 * 117.49907 * 0.02562 * 22 21 20 35 35 H 1.09007 * 117.49718 * 145.01786 * 22 21 20 36 36 H 1.08999 * 117.49910 * 214.97697 * 23 21 20 37 37 H 1.08998 * 117.49775 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1313 5 6 2.6198 2.0169 2.3711 6 6 3.0585 3.4569 2.3015 7 1 3.5656 3.8249 1.4219 8 6 2.8135 4.3042 3.3612 9 7 2.1964 3.8559 4.4326 10 14 3.3567 6.0894 3.2746 11 1 2.6938 6.7533 2.1236 12 1 2.9777 6.7837 4.5314 13 1 4.8302 6.1505 3.0998 14 6 4.1938 0.7264 1.0315 15 8 4.9502 0.7151 1.9838 16 6 4.5892 0.0779 -0.2317 17 6 3.7738 -0.1674 -1.4311 18 7 4.5661 -0.7686 -2.2684 19 8 5.6734 -0.9284 -1.8167 20 6 5.8090 -0.4506 -0.5776 21 6 7.0522 -0.4862 0.2733 22 6 8.3515 -0.9430 -0.3930 23 6 7.6409 -1.8585 0.6071 24 1 -0.5400 0.9352 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3585 2.1316 0.0895 28 1 2.6212 1.4027 -0.9315 29 1 1.5382 1.9723 2.4988 30 1 3.1057 1.5294 3.2163 31 1 2.0237 4.4522 5.1779 32 1 2.7374 0.0954 -1.5836 33 1 7.1231 0.2905 1.0348 34 1 8.3072 -1.2174 -1.4469 35 1 9.2773 -0.4670 -0.0697 36 1 8.0994 -1.9844 1.5879 37 1 7.1287 -2.7356 0.2115 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117763299.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:13:48 Heat of formation + Delta-G solvation = 74.947783 kcal Electronic energy + Delta-G solvation = -21428.338871 eV Core-core repulsion = 18175.856077 eV Total energy + Delta-G solvation = -3252.482794 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.00970 -40.74468 -38.38268 -37.40235 -35.46524 -34.49227 -33.76325 -32.63113 -29.77121 -27.38408 -26.24449 -25.08753 -24.11809 -23.29453 -22.40159 -20.94345 -20.20836 -18.86507 -18.65083 -18.49257 -17.87384 -17.27714 -16.55052 -16.36446 -16.16749 -15.88179 -15.00016 -14.77184 -14.51625 -14.31272 -13.98451 -13.46478 -13.27915 -13.02528 -12.74785 -12.68788 -12.55205 -12.44864 -12.32264 -12.21207 -12.15901 -11.72586 -11.46444 -11.43170 -10.91409 -10.65012 -10.40369 -10.27047 -9.52568 -8.23050 -6.37954 -0.03385 0.69533 1.21314 1.37576 1.40957 1.48605 1.64214 2.11513 2.36024 2.42721 2.82747 3.06859 3.19713 3.21739 3.44831 3.70419 3.86069 3.98601 4.01213 4.15332 4.19488 4.31923 4.53760 4.69058 4.73103 4.76650 4.94462 4.99122 5.00074 5.09586 5.20141 5.20860 5.47436 5.64546 5.72240 5.86549 6.03572 6.59049 6.70447 7.04165 7.20861 7.36729 8.84037 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.015891 B = 0.005928 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.585393 B = 4722.276142 C = 5839.681270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.203 4.203 3 C 0.118 3.882 4 N -0.586 5.586 5 C 0.266 3.734 6 C -0.546 4.546 7 H 0.053 0.947 8 C 0.012 3.988 9 N -0.926 5.926 10 Si 0.965 3.035 11 H -0.261 1.261 12 H -0.277 1.277 13 H -0.278 1.278 14 C 0.581 3.419 15 O -0.577 6.577 16 C -0.273 4.273 17 C 0.021 3.979 18 N -0.366 5.366 19 O 0.093 5.907 20 C 0.084 3.916 21 C -0.122 4.122 22 C -0.140 4.140 23 C -0.145 4.145 24 H 0.107 0.893 25 H 0.121 0.879 26 H 0.109 0.891 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.028 0.972 30 H 0.003 0.997 31 H 0.268 0.732 32 H 0.237 0.763 33 H 0.126 0.874 34 H 0.115 0.885 35 H 0.126 0.874 36 H 0.119 0.881 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.249 -9.985 -12.852 16.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.222 4.222 3 C -0.004 4.004 4 N -0.315 5.315 5 C 0.145 3.855 6 C -0.584 4.584 7 H 0.071 0.929 8 C -0.187 4.187 9 N -0.565 5.565 10 Si 0.790 3.210 11 H -0.186 1.186 12 H -0.202 1.202 13 H -0.203 1.203 14 C 0.370 3.630 15 O -0.459 6.459 16 C -0.281 4.281 17 C -0.161 4.161 18 N -0.073 5.073 19 O 0.035 5.965 20 C 0.020 3.980 21 C -0.141 4.141 22 C -0.177 4.177 23 C -0.182 4.182 24 H 0.125 0.875 25 H 0.139 0.861 26 H 0.127 0.873 27 H 0.109 0.891 28 H 0.118 0.882 29 H 0.046 0.954 30 H 0.021 0.979 31 H 0.077 0.923 32 H 0.253 0.747 33 H 0.144 0.856 34 H 0.133 0.867 35 H 0.144 0.856 36 H 0.137 0.863 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.427 -10.401 -13.421 17.547 hybrid contribution -0.289 1.418 1.284 1.935 sum 4.138 -8.982 -12.137 15.656 Atomic orbital electron populations 1.24147 0.95068 1.03434 0.95838 1.23300 0.97083 0.97799 1.04053 1.21294 0.92741 0.97040 0.89352 1.47966 1.15197 1.51874 1.16465 1.18800 0.94830 0.90748 0.81097 1.21644 1.38600 0.95603 1.02586 0.92895 1.25804 0.94859 1.03512 0.94534 1.70041 1.42180 1.37711 1.06558 0.85502 0.78566 0.78914 0.78051 1.18576 1.20237 1.20322 1.17198 0.81777 0.78194 0.85828 1.90713 1.52697 1.62320 1.40139 1.22016 0.95547 1.12642 0.97851 1.27565 1.02976 0.97597 0.87915 1.73640 0.91976 1.19226 1.22501 1.84487 1.26404 1.60539 1.25021 1.23971 0.96248 0.92458 0.85330 1.20675 0.88742 1.03496 1.01182 1.23276 0.93696 1.01109 0.99596 1.23215 1.01602 0.91181 1.02215 0.87520 0.86128 0.87287 0.89142 0.88179 0.95448 0.97906 0.92306 0.74744 0.85612 0.86681 0.85574 0.86252 0.87638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 14.32 67.78 0.97 -2.30 16 2 C -0.20 -5.42 7.74 25.65 0.20 -5.22 16 3 C 0.12 3.80 5.39 85.63 0.46 4.26 16 4 N -0.59 -25.67 2.46 -834.43 -2.06 -27.73 16 5 C 0.27 14.34 5.14 85.63 0.44 14.78 16 6 C -0.55 -31.27 9.39 25.60 0.24 -31.03 16 7 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 8 C 0.01 0.71 5.46 84.65 0.46 1.17 16 9 N -0.93 -55.34 13.29 21.45 0.28 -55.06 16 10 Si 0.97 44.45 29.54 68.60 2.03 46.47 16 11 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 12 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 14 C 0.58 25.80 7.59 86.65 0.66 26.45 16 15 O -0.58 -30.03 15.01 -4.07 -0.06 -30.09 16 16 C -0.27 -9.57 6.19 -18.75 -0.12 -9.68 16 17 C 0.02 0.60 9.12 87.29 0.80 1.39 16 18 N -0.37 -10.45 12.01 -54.21 -0.65 -11.10 16 19 O 0.09 2.60 10.86 76.99 0.84 3.43 16 20 C 0.08 2.58 7.00 25.48 0.18 2.76 16 21 C -0.12 -3.29 5.69 -11.54 -0.07 -3.35 16 22 C -0.14 -2.46 10.19 30.62 0.31 -2.15 16 23 C -0.15 -2.87 10.24 30.62 0.31 -2.56 16 24 H 0.11 2.28 7.84 -2.91 -0.02 2.25 16 25 H 0.12 2.14 8.06 -2.91 -0.02 2.11 16 26 H 0.11 2.90 7.19 -2.91 -0.02 2.88 16 27 H 0.09 2.95 7.67 -2.39 -0.02 2.93 16 28 H 0.10 2.81 4.69 -2.38 -0.01 2.80 16 29 H 0.03 1.49 8.07 -2.39 -0.02 1.47 16 30 H 0.00 0.17 7.39 -2.39 -0.02 0.16 16 31 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 32 H 0.24 5.54 4.03 -2.91 -0.01 5.53 16 33 H 0.13 4.13 7.12 -2.39 -0.02 4.11 16 34 H 0.11 1.77 8.02 -2.39 -0.02 1.75 16 35 H 0.13 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -71.18 318.57 6.32 -64.87 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 1.09 Total: 14.69 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 4.85 Total: -5.49 kcal Atomic # 7 Polarization: -91.46 SS G_CDS: -2.42 Total: -93.88 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: 0.77 Total: -26.66 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -71.18 6.32 -64.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117763299.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.813 kcal (2) G-P(sol) polarization free energy of solvation -71.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds