Wall clock time and date at job start Mon Mar 30 2020 20:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.47019 * 2 1 4 4 C 1.46497 * 120.00194 * 275.00190 * 3 2 1 5 5 S 1.65602 * 119.99931 * 95.00159 * 3 2 1 6 6 O 1.42095 * 106.40010 * 336.45837 * 5 3 2 7 7 O 1.42098 * 106.40092 * 203.54041 * 5 3 2 8 8 N 1.65597 * 107.21619 * 89.99936 * 5 3 2 9 9 C 1.46506 * 120.00079 * 90.00287 * 8 5 3 10 10 C 1.50701 * 109.46970 * 264.72396 * 9 8 5 11 11 H 1.08005 * 119.99694 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00052 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00110 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00229 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47250 * 89.99260 * 14 12 10 16 16 H 1.48497 * 109.47067 * 209.99831 * 14 12 10 17 17 H 1.48502 * 109.46618 * 329.99589 * 14 12 10 18 18 C 1.46499 * 119.99926 * 269.72326 * 8 5 3 19 19 C 1.53001 * 109.47277 * 265.27680 * 18 8 5 20 20 C 1.53004 * 117.50021 * 243.62427 * 19 18 8 21 21 C 1.53002 * 60.00018 * 252.50784 * 20 19 18 22 22 H 1.08998 * 109.47009 * 59.99678 * 1 2 3 23 23 H 1.08996 * 109.46654 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46871 * 300.00169 * 1 2 3 25 25 H 1.09001 * 109.46846 * 240.00618 * 2 1 3 26 26 H 1.08998 * 109.47009 * 120.00322 * 2 1 3 27 27 H 1.09007 * 109.47243 * 270.00183 * 4 3 2 28 28 H 1.09002 * 109.47421 * 30.00064 * 4 3 2 29 29 H 1.08996 * 109.47455 * 149.99961 * 4 3 2 30 30 H 1.08999 * 109.46864 * 24.71745 * 9 8 5 31 31 H 1.08999 * 109.46950 * 144.72128 * 9 8 5 32 32 H 0.97000 * 119.99969 * 180.02562 * 13 12 10 33 33 H 1.08991 * 109.47463 * 25.27752 * 18 8 5 34 34 H 1.09000 * 109.46878 * 145.27981 * 18 8 5 35 35 H 1.09004 * 115.54893 * 29.32696 * 19 18 8 36 36 H 1.09004 * 117.49613 * 0.02562 * 20 19 18 37 37 H 1.08997 * 117.49860 * 145.01883 * 20 19 18 38 38 H 1.08998 * 117.49692 * 252.51427 * 21 20 19 39 39 H 1.08997 * 117.49881 * 107.48345 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 -1.2638 5 16 2.4122 2.1202 1.4287 6 8 1.6869 1.4415 2.4448 7 8 2.3057 3.5186 1.1999 8 7 4.0144 1.8137 1.7137 9 6 5.0373 2.7325 1.2078 10 6 5.5532 2.2302 -0.1161 11 1 5.1589 1.3176 -0.5382 12 6 6.5293 2.9351 -0.7879 13 7 7.0098 4.0461 -0.2736 14 14 7.1683 2.3130 -2.4292 15 1 6.3489 2.8841 -3.5281 16 1 8.5836 2.7290 -2.5993 17 1 7.0803 0.8310 -2.4650 18 6 4.4087 0.6270 2.4768 19 6 4.5889 1.0038 3.9487 20 6 5.9896 0.8620 4.5479 21 6 4.8880 -0.1264 4.9359 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3632 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 3.1582 1.9479 -1.6670 28 1 1.4169 1.7461 -1.9759 29 1 2.0038 3.1735 -1.0892 30 1 4.6025 3.7233 1.0760 31 1 5.8599 2.7885 1.9208 32 1 7.6962 4.5422 -0.7464 33 1 3.6346 -0.1352 2.3891 34 1 5.3480 0.2378 2.0838 35 1 3.9716 1.8300 4.3015 36 1 6.7828 0.5007 3.8934 37 1 6.2940 1.5950 5.2950 38 1 4.4676 -0.0434 5.9381 39 1 4.9563 -1.1383 4.5366 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072709607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:13:26 Heat of formation + Delta-G solvation = -53.615353 kcal Electronic energy + Delta-G solvation = -21165.030442 eV Core-core repulsion = 18042.416683 eV Total energy + Delta-G solvation = -3122.613759 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.129 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -37.54173 -36.66426 -36.23983 -35.16568 -34.73517 -32.40537 -30.42678 -27.86729 -25.77053 -25.30864 -22.48023 -22.28147 -22.00506 -20.35091 -18.30277 -17.11940 -16.83762 -16.38270 -15.92253 -15.36822 -14.57050 -14.34741 -14.15702 -13.80519 -13.60936 -13.14535 -12.62322 -12.47893 -12.27030 -12.14479 -11.87548 -11.79201 -11.48994 -11.43743 -11.26106 -11.15394 -11.08565 -11.01275 -10.87460 -10.66998 -10.54787 -10.16208 -10.02513 -9.75008 -9.50002 -8.64026 -8.48327 -8.03879 -6.10374 -4.16663 1.30009 3.23751 3.31272 3.32281 3.50937 4.06082 4.21047 4.36167 4.95172 5.02205 5.08120 5.23294 5.24172 5.31339 5.40032 5.43932 5.62475 5.70808 5.82608 5.88097 5.90917 5.92035 6.08295 6.16379 6.19767 6.33338 6.38969 6.41794 6.44870 6.60906 6.64034 6.98407 7.39732 7.47532 7.67925 7.87089 8.17210 8.88145 9.48847 10.97639 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.013011 B = 0.009271 C = 0.006432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.514751 B = 3019.401205 C = 4352.080596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.125 3.875 3 N -1.008 6.008 4 C 0.090 3.910 5 S 2.784 3.216 6 O -0.995 6.995 7 O -0.979 6.979 8 N -0.989 5.989 9 C 0.246 3.754 10 C -0.537 4.537 11 H 0.062 0.938 12 C 0.064 3.936 13 N -0.889 5.889 14 Si 0.892 3.108 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.166 3.834 19 C -0.160 4.160 20 C -0.175 4.175 21 C -0.182 4.182 22 H 0.056 0.944 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.039 0.961 32 H 0.264 0.736 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.208 -8.746 2.366 11.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.001 4.001 3 N -0.847 5.847 4 C -0.056 4.056 5 S 2.793 3.207 6 O -0.979 6.979 7 O -0.963 6.963 8 N -0.829 5.829 9 C 0.124 3.876 10 C -0.576 4.576 11 H 0.080 0.920 12 C -0.139 4.139 13 N -0.527 5.527 14 Si 0.720 3.280 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.199 1.199 18 C 0.039 3.961 19 C -0.180 4.180 20 C -0.212 4.212 21 C -0.219 4.219 22 H 0.075 0.925 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.119 0.881 36 H 0.115 0.885 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.649 -8.067 2.839 11.474 hybrid contribution 0.805 -0.469 -1.233 1.545 sum -6.844 -8.536 1.606 11.059 Atomic orbital electron populations 1.22224 0.96516 1.01872 1.02472 1.21092 0.94007 0.82366 1.02652 1.57861 1.80282 1.22977 1.23602 1.21517 1.02268 0.96842 0.84952 1.01847 0.73087 0.73182 0.72634 1.93535 1.71726 1.76365 1.56309 1.93557 1.86434 1.30614 1.85704 1.57747 1.25054 1.34471 1.65662 1.19188 0.86282 0.88003 0.94131 1.21545 1.21715 1.09435 1.04937 0.91973 1.24947 0.96298 0.94806 0.97825 1.69937 1.28521 1.15488 1.38780 0.86606 0.78260 0.79060 0.84121 1.20507 1.21195 1.19920 1.20579 1.01317 0.86600 0.87636 1.22818 0.99315 1.00775 0.95117 1.23000 0.92415 1.02239 1.03587 1.22899 1.04101 0.95266 0.99677 0.92500 0.91892 0.92064 0.90858 0.90729 0.91416 0.92125 0.90388 0.93293 0.94261 0.92631 0.91550 0.89972 0.88099 0.88506 0.89268 0.89223 0.88973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 10.24 37.16 0.38 -1.71 16 2 C 0.12 1.72 6.04 -4.04 -0.02 1.70 16 3 N -1.01 -17.26 3.24 -121.75 -0.39 -17.65 16 4 C 0.09 1.47 10.68 59.85 0.64 2.11 16 5 S 2.78 56.48 6.02 -107.50 -0.65 55.83 16 6 O -1.00 -20.29 16.08 -57.17 -0.92 -21.21 16 7 O -0.98 -23.13 15.29 -57.17 -0.87 -24.00 16 8 N -0.99 -20.49 2.83 -115.66 -0.33 -20.82 16 9 C 0.25 6.08 5.44 -5.19 -0.03 6.05 16 10 C -0.54 -13.79 9.24 -34.44 -0.32 -14.11 16 11 H 0.06 1.54 7.75 -52.48 -0.41 1.13 16 12 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 13 N -0.89 -25.20 13.29 55.43 0.74 -24.46 16 14 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 16 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 18 C 0.17 2.92 5.62 -4.04 -0.02 2.90 16 19 C -0.16 -2.65 6.01 -90.62 -0.54 -3.19 16 20 C -0.18 -2.58 10.18 -26.73 -0.27 -2.85 16 21 C -0.18 -2.42 10.25 -26.73 -0.27 -2.70 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.07 0.88 8.11 -51.93 -0.42 0.46 16 26 H 0.07 1.01 7.34 -51.93 -0.38 0.62 16 27 H 0.07 1.20 7.93 -51.93 -0.41 0.78 16 28 H 0.06 0.79 8.07 -51.93 -0.42 0.37 16 29 H 0.08 1.38 7.02 -51.93 -0.36 1.01 16 30 H 0.05 1.34 6.91 -51.93 -0.36 0.98 16 31 H 0.04 1.02 8.11 -51.93 -0.42 0.60 16 32 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.07 1.05 7.34 -51.93 -0.38 0.67 16 34 H 0.08 1.45 7.84 -51.93 -0.41 1.05 16 35 H 0.10 1.79 8.14 -51.93 -0.42 1.36 16 36 H 0.10 1.43 8.03 -51.93 -0.42 1.01 16 37 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 336.51 15.07 5.07 5.07 Total: -1.00 -30.67 336.51 -9.42 -40.09 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -6.48 Total: 1.98 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -0.56 Total: -10.19 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: 0.01 Total: -62.93 kcal Atomic # 8 Polarization: -43.42 SS G_CDS: -1.79 Total: -45.21 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 56.48 SS G_CDS: -0.65 Total: 55.83 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.67 -9.42 -40.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072709607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.528 kcal (2) G-P(sol) polarization free energy of solvation -30.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds