Wall clock time and date at job start Mon Mar 30 2020 20:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.47019 * 2 1 4 4 C 1.46497 * 120.00194 * 275.00190 * 3 2 1 5 5 S 1.65602 * 119.99931 * 95.00159 * 3 2 1 6 6 O 1.42095 * 106.40010 * 336.45837 * 5 3 2 7 7 O 1.42098 * 106.40092 * 203.54041 * 5 3 2 8 8 N 1.65597 * 107.21619 * 89.99936 * 5 3 2 9 9 C 1.46506 * 120.00079 * 90.00287 * 8 5 3 10 10 C 1.50701 * 109.46970 * 264.72396 * 9 8 5 11 11 H 1.08005 * 119.99694 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00052 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00110 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00229 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47250 * 89.99260 * 14 12 10 16 16 H 1.48497 * 109.47067 * 209.99831 * 14 12 10 17 17 H 1.48502 * 109.46618 * 329.99589 * 14 12 10 18 18 C 1.46499 * 119.99926 * 269.72326 * 8 5 3 19 19 C 1.53001 * 109.47277 * 265.27680 * 18 8 5 20 20 C 1.53004 * 117.50021 * 243.62427 * 19 18 8 21 21 C 1.53002 * 60.00018 * 252.50784 * 20 19 18 22 22 H 1.08998 * 109.47009 * 59.99678 * 1 2 3 23 23 H 1.08996 * 109.46654 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46871 * 300.00169 * 1 2 3 25 25 H 1.09001 * 109.46846 * 240.00618 * 2 1 3 26 26 H 1.08998 * 109.47009 * 120.00322 * 2 1 3 27 27 H 1.09007 * 109.47243 * 270.00183 * 4 3 2 28 28 H 1.09002 * 109.47421 * 30.00064 * 4 3 2 29 29 H 1.08996 * 109.47455 * 149.99961 * 4 3 2 30 30 H 1.08999 * 109.46864 * 24.71745 * 9 8 5 31 31 H 1.08999 * 109.46950 * 144.72128 * 9 8 5 32 32 H 0.97000 * 119.99969 * 180.02562 * 13 12 10 33 33 H 1.08991 * 109.47463 * 25.27752 * 18 8 5 34 34 H 1.09000 * 109.46878 * 145.27981 * 18 8 5 35 35 H 1.09004 * 115.54893 * 29.32696 * 19 18 8 36 36 H 1.09004 * 117.49613 * 0.02562 * 20 19 18 37 37 H 1.08997 * 117.49860 * 145.01883 * 20 19 18 38 38 H 1.08998 * 117.49692 * 252.51427 * 21 20 19 39 39 H 1.08997 * 117.49881 * 107.48345 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 -1.2638 5 16 2.4122 2.1202 1.4287 6 8 1.6869 1.4415 2.4448 7 8 2.3057 3.5186 1.1999 8 7 4.0144 1.8137 1.7137 9 6 5.0373 2.7325 1.2078 10 6 5.5532 2.2302 -0.1161 11 1 5.1589 1.3176 -0.5382 12 6 6.5293 2.9351 -0.7879 13 7 7.0098 4.0461 -0.2736 14 14 7.1683 2.3130 -2.4292 15 1 6.3489 2.8841 -3.5281 16 1 8.5836 2.7290 -2.5993 17 1 7.0803 0.8310 -2.4650 18 6 4.4087 0.6270 2.4768 19 6 4.5889 1.0038 3.9487 20 6 5.9896 0.8620 4.5479 21 6 4.8880 -0.1264 4.9359 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3632 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 3.1582 1.9479 -1.6670 28 1 1.4169 1.7461 -1.9759 29 1 2.0038 3.1735 -1.0892 30 1 4.6025 3.7233 1.0760 31 1 5.8599 2.7885 1.9208 32 1 7.6962 4.5422 -0.7464 33 1 3.6346 -0.1352 2.3891 34 1 5.3480 0.2378 2.0838 35 1 3.9716 1.8300 4.3015 36 1 6.7828 0.5007 3.8934 37 1 6.2940 1.5950 5.2950 38 1 4.4676 -0.0434 5.9381 39 1 4.9563 -1.1383 4.5366 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072709607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:13:26 Heat of formation + Delta-G solvation = -73.535720 kcal Electronic energy + Delta-G solvation = -21165.894254 eV Core-core repulsion = 18042.416683 eV Total energy + Delta-G solvation = -3123.477571 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.129 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.88755 -38.32836 -37.53331 -36.86431 -36.37341 -34.34854 -31.55302 -29.67907 -27.13392 -26.90530 -24.28264 -23.50010 -23.16241 -21.68592 -19.84390 -18.70541 -18.51190 -18.21166 -17.53348 -16.74322 -16.26861 -15.75587 -15.49421 -15.13502 -14.78182 -14.76111 -14.38787 -14.08957 -13.61015 -13.56224 -13.33444 -13.14323 -13.10788 -12.96990 -12.86852 -12.75306 -12.59323 -12.38503 -12.29881 -12.28113 -11.98258 -11.77914 -11.68502 -11.24252 -10.75909 -10.55773 -9.99563 -9.73436 -8.14214 -6.27957 -0.29666 1.44930 1.45191 1.55374 1.99280 2.44093 2.54223 2.97439 3.17524 3.39861 3.79029 3.84744 4.00777 4.16326 4.25694 4.32036 4.38123 4.49149 4.61417 4.74872 4.80129 4.81492 4.86845 4.93144 4.98976 5.07791 5.08494 5.26007 5.28869 5.31372 5.33978 5.37536 5.52146 5.70648 5.78834 6.01131 6.13423 6.84167 7.41977 8.94179 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.013011 B = 0.009271 C = 0.006432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.514751 B = 3019.401205 C = 4352.080596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.113 3.887 3 N -1.005 6.005 4 C 0.088 3.912 5 S 2.791 3.209 6 O -0.998 6.998 7 O -1.020 7.020 8 N -0.994 5.994 9 C 0.264 3.736 10 C -0.536 4.536 11 H 0.073 0.927 12 C 0.010 3.990 13 N -0.930 5.930 14 Si 0.959 3.041 15 H -0.273 1.273 16 H -0.288 1.288 17 H -0.260 1.260 18 C 0.162 3.838 19 C -0.193 4.193 20 C -0.180 4.180 21 C -0.150 4.150 22 H 0.065 0.935 23 H 0.091 0.909 24 H 0.039 0.961 25 H 0.100 0.900 26 H 0.077 0.923 27 H 0.054 0.946 28 H 0.102 0.898 29 H 0.057 0.943 30 H 0.012 0.988 31 H 0.018 0.982 32 H 0.264 0.736 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.778 -11.527 1.406 13.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.011 4.011 3 N -0.846 5.846 4 C -0.057 4.057 5 S 2.800 3.200 6 O -0.982 6.982 7 O -1.004 7.004 8 N -0.833 5.833 9 C 0.141 3.859 10 C -0.575 4.575 11 H 0.091 0.909 12 C -0.189 4.189 13 N -0.570 5.570 14 Si 0.784 3.216 15 H -0.198 1.198 16 H -0.214 1.214 17 H -0.184 1.184 18 C 0.036 3.964 19 C -0.213 4.213 20 C -0.217 4.217 21 C -0.188 4.188 22 H 0.084 0.916 23 H 0.110 0.890 24 H 0.059 0.941 25 H 0.118 0.882 26 H 0.095 0.905 27 H 0.073 0.927 28 H 0.121 0.879 29 H 0.076 0.924 30 H 0.030 0.970 31 H 0.036 0.964 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.124 0.876 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.238 -10.881 1.904 13.780 hybrid contribution 0.920 0.365 -0.891 1.331 sum -7.319 -10.516 1.013 12.852 Atomic orbital electron populations 1.22220 0.95132 1.03596 1.01920 1.21471 0.95215 0.80339 1.04102 1.57671 1.79956 1.24509 1.22510 1.21577 1.02887 0.95990 0.85246 1.01432 0.72856 0.72414 0.73262 1.93518 1.71543 1.76083 1.57020 1.93500 1.86899 1.33584 1.86436 1.57649 1.24329 1.34919 1.66412 1.18675 0.86119 0.87348 0.93782 1.21798 1.21249 1.09461 1.04978 0.90891 1.25823 0.96669 0.94889 1.01526 1.70082 1.29357 1.17004 1.40566 0.85538 0.77292 0.79171 0.79587 1.19827 1.21428 1.18371 1.20779 1.01893 0.85789 0.87900 1.22764 1.00714 1.02533 0.95301 1.23054 0.91847 1.03231 1.03584 1.23032 1.01318 0.95076 0.99370 0.91566 0.89032 0.94137 0.88220 0.90482 0.92706 0.87947 0.92425 0.96969 0.96384 0.92673 0.89412 0.90148 0.90037 0.88720 0.88844 0.87551 0.86937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.62 10.24 71.98 0.74 -2.89 16 2 C 0.11 2.80 6.04 86.38 0.52 3.32 16 3 N -1.01 -33.12 3.24 -539.12 -1.75 -34.87 16 4 C 0.09 2.79 10.68 127.77 1.36 4.16 16 5 S 2.79 114.44 6.02 -56.49 -0.34 114.10 16 6 O -1.00 -40.39 16.08 -128.00 -2.06 -42.45 16 7 O -1.02 -50.17 15.29 -128.00 -1.96 -52.13 16 8 N -0.99 -41.86 2.83 -519.85 -1.47 -43.33 16 9 C 0.26 13.57 5.44 85.63 0.47 14.03 16 10 C -0.54 -27.72 9.24 25.60 0.24 -27.48 16 11 H 0.07 3.55 7.75 -2.91 -0.02 3.52 16 12 C 0.01 0.54 5.46 84.65 0.46 1.00 16 13 N -0.93 -54.04 13.29 21.45 0.28 -53.76 16 14 Si 0.96 41.45 29.54 68.60 2.03 43.48 16 15 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 16 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 17 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 18 C 0.16 5.64 5.62 86.38 0.49 6.13 16 19 C -0.19 -6.33 6.01 -10.79 -0.06 -6.40 16 20 C -0.18 -5.18 10.18 30.60 0.31 -4.87 16 21 C -0.15 -3.67 10.25 30.60 0.31 -3.35 16 22 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.10 1.98 8.11 -2.39 -0.02 1.96 16 26 H 0.08 1.86 7.34 -2.39 -0.02 1.85 16 27 H 0.05 1.87 7.93 -2.38 -0.02 1.85 16 28 H 0.10 2.35 8.07 -2.39 -0.02 2.34 16 29 H 0.06 2.05 7.02 -2.39 -0.02 2.04 16 30 H 0.01 0.72 6.91 -2.39 -0.02 0.70 16 31 H 0.02 0.99 8.11 -2.39 -0.02 0.97 16 32 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 33 H 0.09 2.62 7.34 -2.39 -0.02 2.60 16 34 H 0.08 2.79 7.84 -2.39 -0.02 2.77 16 35 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 36 H 0.09 2.74 8.03 -2.38 -0.02 2.73 16 37 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -67.46 336.51 0.58 -66.88 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 1.01 Total: 18.43 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: 4.83 Total: -16.35 kcal Atomic # 7 Polarization: -129.02 SS G_CDS: -2.93 Total: -131.95 kcal Atomic # 8 Polarization: -90.56 SS G_CDS: -4.01 Total: -94.57 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Atomic # 16 Polarization: 114.44 SS G_CDS: -0.34 Total: 114.10 kcal Total: -67.46 0.58 -66.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072709607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.660 kcal (2) G-P(sol) polarization free energy of solvation -67.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds