Wall clock time and date at job start Mon Mar 30 2020 20:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47022 * 2 1 4 4 N 1.46498 * 109.47120 * 240.00144 * 2 1 3 5 5 C 1.36935 * 120.00239 * 84.99640 * 4 2 1 6 6 H 1.08004 * 120.00069 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00368 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99540 * 359.72375 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72253 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72375 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72186 * 9 7 5 13 13 C 1.50700 * 109.47215 * 119.99986 * 2 1 3 14 14 C 1.38278 * 119.92924 * 79.72479 * 13 2 1 15 15 C 1.38113 * 120.07050 * 179.76691 * 14 13 2 16 16 C 1.38869 * 119.92791 * 0.48239 * 15 14 13 17 17 N 1.39947 * 120.07218 * 179.78925 * 16 15 14 18 18 C 1.47095 * 125.55729 * 359.69903 * 17 16 15 19 19 C 1.54085 * 103.77935 * 179.87237 * 18 17 16 20 20 O 1.45704 * 104.01099 * 0.37415 * 19 18 17 21 21 C 1.33790 * 109.47039 * 359.75523 * 20 19 18 22 22 O 1.21516 * 123.06909 * 180.02562 * 21 20 19 23 23 C 1.38868 * 119.86006 * 359.77229 * 16 15 14 24 24 C 1.38114 * 119.92977 * 359.97438 * 23 16 15 25 25 H 1.09003 * 109.46933 * 300.00179 * 1 2 3 26 26 H 1.09004 * 109.47411 * 59.99789 * 1 2 3 27 27 H 1.08996 * 109.47329 * 180.02562 * 1 2 3 28 28 H 0.97004 * 119.99747 * 265.00379 * 4 2 1 29 29 H 0.97000 * 120.00481 * 0.27542 * 8 7 5 30 30 H 1.08001 * 119.96416 * 359.97438 * 14 13 2 31 31 H 1.07994 * 120.03768 * 180.27410 * 15 14 13 32 32 H 1.09007 * 110.56537 * 298.57217 * 18 17 16 33 33 H 1.09005 * 110.56546 * 61.42091 * 18 17 16 34 34 H 1.09000 * 110.72878 * 241.64215 * 19 18 17 35 35 H 1.08995 * 110.43271 * 118.96422 * 19 18 17 36 36 H 1.07994 * 120.03401 * 179.97438 * 23 16 15 37 37 H 1.07992 * 119.96613 * 180.02562 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1490 -0.0075 -2.3758 6 1 1.8925 1.0405 -2.4242 7 6 2.6112 -0.6619 -3.5093 8 7 2.9290 -1.9378 -3.4489 9 14 2.7902 0.2701 -5.1183 10 1 3.3049 -0.6469 -6.1669 11 1 1.4669 0.8022 -5.5320 12 1 3.7411 1.3958 -4.9350 13 6 2.0323 -0.7104 1.2305 14 6 2.0608 -2.0924 1.2659 15 6 2.5251 -2.7465 2.3903 16 6 2.9543 -2.0147 3.4897 17 7 3.4212 -2.6744 4.6322 18 6 3.5046 -4.1329 4.8038 19 6 4.0816 -4.3032 6.2223 20 8 4.2525 -2.9373 6.7000 21 6 3.8598 -2.0804 5.7504 22 8 3.8980 -0.8739 5.8893 23 6 2.9195 -0.6269 3.4529 24 6 2.4590 0.0212 2.3236 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 2.2489 -1.6318 -1.1526 29 1 2.8364 -2.4217 -2.6134 30 1 1.7226 -2.6610 0.4122 31 1 2.5512 -3.8258 2.4157 32 1 2.5146 -4.5838 4.7344 33 1 4.1771 -4.5676 4.0642 34 1 5.0412 -4.8192 6.1891 35 1 3.3795 -4.8446 6.8562 36 1 3.2522 -0.0551 4.3065 37 1 2.4320 1.1003 2.2942 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181266819.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:10:26 Heat of formation + Delta-G solvation = -20.534891 kcal Electronic energy + Delta-G solvation = -20852.420400 eV Core-core repulsion = 17595.797167 eV Total energy + Delta-G solvation = -3256.623234 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.11932 -39.31164 -37.57227 -36.42655 -34.81913 -32.33959 -30.85594 -30.46477 -28.84459 -27.81872 -24.63371 -24.20566 -23.41325 -21.86749 -21.43468 -20.00783 -18.27914 -17.77707 -17.43664 -17.10464 -16.13407 -15.39038 -14.97151 -14.60101 -14.53155 -14.23780 -14.11291 -13.69033 -13.47988 -13.18342 -13.04768 -12.99455 -12.68236 -12.17906 -12.06692 -11.34387 -11.32659 -11.10698 -10.73979 -10.62440 -10.26532 -10.22346 -10.17087 -9.95226 -9.18677 -8.95118 -8.75338 -7.81043 -7.05367 -6.10789 -3.10141 1.39646 1.60794 2.03793 2.52862 3.03734 3.52254 3.55788 3.66425 3.72914 3.98492 4.23852 4.25715 4.67679 4.76049 4.87201 5.00073 5.04482 5.26651 5.31908 5.49563 5.54913 5.63908 5.66165 5.84395 6.05112 6.21419 6.27820 6.36808 6.46170 6.49240 6.56936 6.69543 6.89543 7.04726 7.12713 7.22180 7.71109 7.81170 8.74896 9.21435 10.07755 10.22757 11.37513 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.032635 B = 0.003665 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.772625 B = 7638.272353 C = 7972.627009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.212 3.788 3 H 0.057 0.943 4 N -0.733 5.733 5 C -0.329 4.329 6 H 0.066 0.934 7 C -0.045 4.045 8 N -0.944 5.944 9 Si 1.080 2.920 10 H -0.285 1.285 11 H -0.295 1.295 12 H -0.295 1.295 13 C -0.083 4.083 14 C -0.081 4.081 15 C -0.149 4.149 16 C 0.157 3.843 17 N -0.565 5.565 18 C 0.058 3.942 19 C 0.042 3.958 20 O -0.324 6.324 21 C 0.642 3.358 22 O -0.503 6.503 23 C -0.150 4.150 24 C -0.089 4.089 25 H 0.039 0.961 26 H 0.057 0.943 27 H 0.046 0.954 28 H 0.367 0.633 29 H 0.254 0.746 30 H 0.129 0.871 31 H 0.122 0.878 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.152 0.848 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.561 -6.672 18.367 19.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.103 3.897 3 H 0.075 0.925 4 N -0.377 5.377 5 C -0.460 4.460 6 H 0.084 0.916 7 C -0.242 4.242 8 N -0.589 5.589 9 Si 0.911 3.089 10 H -0.211 1.211 11 H -0.223 1.223 12 H -0.223 1.223 13 C -0.085 4.085 14 C -0.100 4.100 15 C -0.170 4.170 16 C 0.066 3.934 17 N -0.303 5.303 18 C -0.065 4.065 19 C -0.033 4.033 20 O -0.234 6.234 21 C 0.397 3.603 22 O -0.388 6.388 23 C -0.170 4.170 24 C -0.108 4.108 25 H 0.058 0.942 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.202 0.798 29 H 0.065 0.935 30 H 0.147 0.853 31 H 0.140 0.860 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.170 0.830 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.000 -5.928 17.090 18.089 hybrid contribution -0.429 -0.453 1.539 1.661 sum -0.429 -6.382 18.630 19.697 Atomic orbital electron populations 1.22399 0.98210 1.00999 1.00243 1.19136 0.92033 0.94974 0.83581 0.92485 1.42523 1.79373 1.09819 1.05942 1.20060 1.41846 0.95224 0.88888 0.91640 1.25761 0.99328 0.97512 1.01617 1.70890 1.51291 1.08440 1.28314 0.83243 0.75900 0.74299 0.75505 1.21065 1.22260 1.22257 1.20496 0.97878 0.93946 0.96184 1.20800 0.98032 0.94325 0.96823 1.20618 1.04278 0.99192 0.92908 1.17315 0.99961 0.91524 0.84577 1.45315 1.63563 1.07004 1.14382 1.22970 1.04276 0.81327 0.97885 1.24346 1.03948 0.81427 0.93540 1.87318 1.79341 1.17948 1.38830 1.18446 0.77048 0.85810 0.78990 1.90955 1.58327 1.09309 1.80162 1.21472 1.02680 0.92218 1.00604 1.20942 0.97784 0.99990 0.92072 0.94166 0.92387 0.93516 0.79829 0.93534 0.85301 0.86048 0.88119 0.88048 0.87139 0.87214 0.83041 0.85518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.47 37.16 0.35 -2.57 16 2 C 0.21 4.33 3.09 -69.09 -0.21 4.11 16 3 H 0.06 1.19 7.94 -51.93 -0.41 0.78 16 4 N -0.73 -18.25 5.07 -54.55 -0.28 -18.53 16 5 C -0.33 -9.22 9.93 -15.06 -0.15 -9.36 16 6 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 7 C -0.04 -1.30 5.50 -17.43 -0.10 -1.39 16 8 N -0.94 -28.96 13.70 55.49 0.76 -28.20 16 9 Si 1.08 25.86 29.92 -169.99 -5.09 20.78 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.30 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.30 -6.79 7.11 56.52 0.40 -6.39 16 13 C -0.08 -1.49 4.96 -104.59 -0.52 -2.01 16 14 C -0.08 -1.35 9.04 -39.61 -0.36 -1.70 16 15 C -0.15 -2.10 9.49 -39.39 -0.37 -2.47 16 16 C 0.16 2.29 6.63 -83.69 -0.56 1.74 16 17 N -0.57 -6.85 3.16 -118.26 -0.37 -7.23 16 18 C 0.06 0.38 6.49 -3.15 -0.02 0.36 16 19 C 0.04 0.22 8.23 37.72 0.31 0.53 16 20 O -0.32 -3.55 11.09 -37.88 -0.42 -3.97 16 21 C 0.64 8.90 8.77 53.71 0.47 9.37 16 22 O -0.50 -8.73 14.75 -19.12 -0.28 -9.01 16 23 C -0.15 -2.40 9.31 -39.39 -0.37 -2.77 16 24 C -0.09 -1.45 9.66 -39.61 -0.38 -1.84 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.37 9.29 4.91 -40.82 -0.20 9.09 16 29 H 0.25 7.64 6.77 -40.82 -0.28 7.36 16 30 H 0.13 2.20 6.93 -52.49 -0.36 1.84 16 31 H 0.12 1.32 7.31 -52.49 -0.38 0.94 16 32 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.11 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.11 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.15 2.52 5.24 -52.49 -0.28 2.25 16 37 H 0.13 1.87 8.03 -52.49 -0.42 1.44 16 LS Contribution 311.52 15.07 4.69 4.69 Total: -1.00 -35.00 311.52 -7.38 -42.39 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -4.50 Total: 7.08 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -1.90 Total: -8.00 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.11 Total: -53.96 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -0.70 Total: -12.98 kcal Atomic # 14 Polarization: 25.86 SS G_CDS: -5.09 Total: 20.78 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -35.00 -7.38 -42.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181266819.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.851 kcal (2) G-P(sol) polarization free energy of solvation -35.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds