Wall clock time and date at job start Mon Mar 30 2020 20:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46896 * 2 1 4 4 N 1.46501 * 109.47201 * 119.99242 * 2 1 3 5 5 C 1.36942 * 120.00139 * 275.00521 * 4 2 1 6 6 H 1.07993 * 119.99792 * 359.97438 * 5 4 2 7 7 C 1.38813 * 120.00004 * 180.02562 * 5 4 2 8 8 N 1.31620 * 119.99651 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00090 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47403 * 89.99904 * 9 7 5 11 11 H 1.48500 * 109.47424 * 209.99829 * 9 7 5 12 12 H 1.48499 * 109.47009 * 329.99782 * 9 7 5 13 13 C 1.50694 * 109.47291 * 239.99633 * 2 1 3 14 14 C 1.38279 * 119.93228 * 100.00109 * 13 2 1 15 15 C 1.38110 * 120.07199 * 180.02562 * 14 13 2 16 16 C 1.38865 * 119.93189 * 359.97438 * 15 14 13 17 17 N 1.39947 * 120.07348 * 179.72553 * 16 15 14 18 18 C 1.47095 * 125.55867 * 179.72566 * 17 16 15 19 19 C 1.54092 * 103.77473 * 179.87140 * 18 17 16 20 20 O 1.45699 * 104.01129 * 0.37083 * 19 18 17 21 21 C 1.33782 * 109.47508 * 359.75692 * 20 19 18 22 22 O 1.21511 * 123.07368 * 180.02562 * 21 20 19 23 23 C 1.38868 * 119.85607 * 0.02562 * 16 15 14 24 24 C 1.38111 * 119.93158 * 359.97438 * 23 16 15 25 25 H 1.09000 * 109.47340 * 300.00185 * 1 2 3 26 26 H 1.08988 * 109.47014 * 60.00715 * 1 2 3 27 27 H 1.09001 * 109.46611 * 180.02562 * 1 2 3 28 28 H 0.97001 * 120.00077 * 94.99958 * 4 2 1 29 29 H 0.97010 * 119.99641 * 179.97438 * 8 7 5 30 30 H 1.08003 * 119.96410 * 359.97438 * 14 13 2 31 31 H 1.07996 * 120.03714 * 179.97438 * 15 14 13 32 32 H 1.09000 * 110.56012 * 298.56955 * 18 17 16 33 33 H 1.09000 * 110.57057 * 61.42427 * 18 17 16 34 34 H 1.09002 * 110.72846 * 241.63246 * 19 18 17 35 35 H 1.09005 * 110.43196 * 118.95905 * 19 18 17 36 36 H 1.08007 * 120.03134 * 179.97438 * 23 16 15 37 37 H 1.08008 * 119.96429 * 180.02562 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 2.1491 -0.0072 2.3758 6 1 1.8925 1.0407 2.4241 7 6 2.6123 -0.6613 3.5092 8 7 2.9254 -1.9384 3.4501 9 14 2.7913 0.2708 5.1180 10 1 1.5239 0.1797 5.8866 11 1 3.8962 -0.3221 5.9134 12 1 3.0960 1.6960 4.8330 13 6 2.0324 -0.7105 -1.2304 14 6 2.4586 0.0209 -2.3237 15 6 2.9190 -0.6272 -3.4530 16 6 2.9542 -2.0149 -3.4896 17 7 3.4149 -2.6749 -4.6345 18 6 3.5087 -4.1333 -4.8018 19 6 4.0663 -4.3039 -6.2281 20 8 4.2349 -2.9381 -6.7066 21 6 3.8477 -2.0811 -5.7552 22 8 3.8846 -0.8745 -5.8945 23 6 2.5255 -2.7466 -2.3899 24 6 2.0661 -2.0924 -1.2636 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 2.2491 -1.6316 1.1528 29 1 3.2495 -2.3954 4.2421 30 1 2.4306 1.1002 -2.2949 31 1 3.2514 -0.0554 -4.3068 32 1 4.1926 -4.5595 -4.0677 33 1 2.5235 -4.5923 -4.7204 34 1 3.3587 -4.8444 -6.8568 35 1 5.0255 -4.8210 -6.2024 36 1 2.5513 -3.8260 -2.4154 37 1 1.7329 -2.6610 -0.4078 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181266838.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:10:28 Heat of formation + Delta-G solvation = -20.949923 kcal Electronic energy + Delta-G solvation = -20806.644743 eV Core-core repulsion = 17550.003512 eV Total energy + Delta-G solvation = -3256.641231 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.07023 -39.22565 -37.52131 -36.32256 -34.63866 -32.14346 -30.77008 -30.44346 -28.96853 -27.88063 -24.61596 -24.21857 -23.46812 -21.80706 -21.31982 -19.83948 -18.21432 -17.73219 -17.36848 -17.07488 -15.86668 -15.11248 -14.92006 -14.71078 -14.48751 -14.18528 -14.00255 -13.79669 -13.40392 -13.11007 -12.92592 -12.63025 -12.57523 -12.11568 -11.98017 -11.33960 -11.25645 -11.06599 -10.84712 -10.75219 -10.32248 -10.23986 -10.12870 -9.95592 -9.64225 -8.94314 -8.66543 -7.73467 -6.97914 -5.77865 -3.06039 1.47379 1.69958 2.09166 2.58269 3.08291 3.43607 3.49039 3.50454 3.70811 4.06628 4.28499 4.30994 4.59556 4.80115 4.92681 5.04474 5.12518 5.35988 5.40267 5.55308 5.58507 5.70764 5.76262 5.95364 6.13509 6.29925 6.36019 6.45634 6.56440 6.58599 6.65305 6.78701 6.97391 7.11017 7.21536 7.30686 7.70280 7.76336 8.40913 9.52283 10.08414 10.43744 11.44994 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.032516 B = 0.003654 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.914081 B = 7661.332217 C = 8002.607544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.207 3.793 3 H 0.056 0.944 4 N -0.722 5.722 5 C -0.238 4.238 6 H 0.072 0.928 7 C -0.013 4.013 8 N -0.934 5.934 9 Si 0.907 3.093 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.082 4.082 14 C -0.090 4.090 15 C -0.151 4.151 16 C 0.156 3.844 17 N -0.565 5.565 18 C 0.058 3.942 19 C 0.042 3.958 20 O -0.325 6.325 21 C 0.642 3.358 22 O -0.504 6.504 23 C -0.150 4.150 24 C -0.077 4.077 25 H 0.056 0.944 26 H 0.038 0.962 27 H 0.047 0.953 28 H 0.384 0.616 29 H 0.255 0.745 30 H 0.126 0.874 31 H 0.151 0.849 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.121 0.879 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.442 -7.117 -18.204 19.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.097 3.903 3 H 0.074 0.926 4 N -0.364 5.364 5 C -0.369 4.369 6 H 0.090 0.910 7 C -0.209 4.209 8 N -0.582 5.582 9 Si 0.738 3.262 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.207 1.207 13 C -0.083 4.083 14 C -0.109 4.109 15 C -0.171 4.171 16 C 0.065 3.935 17 N -0.302 5.302 18 C -0.064 4.064 19 C -0.033 4.033 20 O -0.235 6.235 21 C 0.397 3.603 22 O -0.388 6.388 23 C -0.171 4.171 24 C -0.096 4.096 25 H 0.075 0.925 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.219 0.781 29 H 0.065 0.935 30 H 0.144 0.856 31 H 0.168 0.832 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.139 0.861 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.277 -6.349 -18.424 19.490 hybrid contribution 0.201 -0.227 1.066 1.109 sum -0.076 -6.577 -17.358 18.562 Atomic orbital electron populations 1.22415 0.98303 1.01080 1.00122 1.19203 0.92038 0.95009 0.84052 0.92588 1.42527 1.78232 1.10692 1.04962 1.19263 1.36442 0.94025 0.87150 0.91046 1.24725 1.02091 0.96018 0.98076 1.69660 1.50962 1.08719 1.28879 0.86186 0.77271 0.78859 0.83865 1.21741 1.21814 1.20730 1.20477 0.97809 0.93964 0.96089 1.20936 0.97888 0.99936 0.92126 1.21449 1.02868 0.92203 1.00607 1.17323 1.00135 0.91530 0.84529 1.45317 1.63788 1.06976 1.14143 1.22963 1.04350 0.81390 0.97738 1.24344 1.04030 0.81435 0.93465 1.87311 1.79572 1.17944 1.38682 1.18446 0.77038 0.85801 0.79040 1.90953 1.58229 1.09312 1.80314 1.20628 1.04345 0.99168 0.92922 1.20854 0.97630 0.94362 0.96763 0.92466 0.94284 0.93384 0.78072 0.93536 0.85592 0.83156 0.88036 0.88137 0.87217 0.87222 0.86114 0.84919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.47 37.16 0.35 -2.53 16 2 C 0.21 4.15 3.09 -69.08 -0.21 3.94 16 3 H 0.06 1.14 7.94 -51.93 -0.41 0.73 16 4 N -0.72 -17.90 5.07 -54.55 -0.28 -18.18 16 5 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 6 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -27.83 13.06 55.49 0.72 -27.11 16 9 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 13 C -0.08 -1.46 4.96 -104.59 -0.52 -1.98 16 14 C -0.09 -1.47 9.66 -39.61 -0.38 -1.85 16 15 C -0.15 -2.44 9.31 -39.40 -0.37 -2.80 16 16 C 0.16 2.29 6.63 -83.69 -0.56 1.74 16 17 N -0.57 -6.92 3.16 -118.27 -0.37 -7.30 16 18 C 0.06 0.39 6.49 -3.15 -0.02 0.37 16 19 C 0.04 0.22 8.23 37.73 0.31 0.53 16 20 O -0.32 -3.59 11.09 -37.86 -0.42 -4.01 16 21 C 0.64 8.97 8.77 53.71 0.47 9.44 16 22 O -0.50 -8.79 14.75 -19.12 -0.28 -9.07 16 23 C -0.15 -2.13 9.49 -39.39 -0.37 -2.51 16 24 C -0.08 -1.30 9.05 -39.61 -0.36 -1.66 16 25 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.04 0.61 8.14 -51.94 -0.42 0.18 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.38 9.94 6.06 -40.82 -0.25 9.70 16 29 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.13 1.84 8.03 -52.48 -0.42 1.42 16 31 H 0.15 2.52 5.24 -52.49 -0.28 2.25 16 32 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.11 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.12 1.34 7.31 -52.48 -0.38 0.96 16 37 H 0.13 2.32 6.91 -52.48 -0.36 1.96 16 LS Contribution 313.19 15.07 4.72 4.72 Total: -1.00 -33.80 313.19 -7.44 -41.24 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -4.61 Total: 6.92 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -1.90 Total: -4.46 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: 0.07 Total: -52.58 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.70 Total: -13.08 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.80 -7.44 -41.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181266838.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.290 kcal (2) G-P(sol) polarization free energy of solvation -33.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds