Wall clock time and date at job start Mon Mar 30 2020 20:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46896 * 2 1 4 4 N 1.46501 * 109.47201 * 119.99242 * 2 1 3 5 5 C 1.36942 * 120.00139 * 275.00521 * 4 2 1 6 6 H 1.07993 * 119.99792 * 359.97438 * 5 4 2 7 7 C 1.38813 * 120.00004 * 180.02562 * 5 4 2 8 8 N 1.31620 * 119.99651 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00090 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47403 * 89.99904 * 9 7 5 11 11 H 1.48500 * 109.47424 * 209.99829 * 9 7 5 12 12 H 1.48499 * 109.47009 * 329.99782 * 9 7 5 13 13 C 1.50694 * 109.47291 * 239.99633 * 2 1 3 14 14 C 1.38279 * 119.93228 * 100.00109 * 13 2 1 15 15 C 1.38110 * 120.07199 * 180.02562 * 14 13 2 16 16 C 1.38865 * 119.93189 * 359.97438 * 15 14 13 17 17 N 1.39947 * 120.07348 * 179.72553 * 16 15 14 18 18 C 1.47095 * 125.55867 * 179.72566 * 17 16 15 19 19 C 1.54092 * 103.77473 * 179.87140 * 18 17 16 20 20 O 1.45699 * 104.01129 * 0.37083 * 19 18 17 21 21 C 1.33782 * 109.47508 * 359.75692 * 20 19 18 22 22 O 1.21511 * 123.07368 * 180.02562 * 21 20 19 23 23 C 1.38868 * 119.85607 * 0.02562 * 16 15 14 24 24 C 1.38111 * 119.93158 * 359.97438 * 23 16 15 25 25 H 1.09000 * 109.47340 * 300.00185 * 1 2 3 26 26 H 1.08988 * 109.47014 * 60.00715 * 1 2 3 27 27 H 1.09001 * 109.46611 * 180.02562 * 1 2 3 28 28 H 0.97001 * 120.00077 * 94.99958 * 4 2 1 29 29 H 0.97010 * 119.99641 * 179.97438 * 8 7 5 30 30 H 1.08003 * 119.96410 * 359.97438 * 14 13 2 31 31 H 1.07996 * 120.03714 * 179.97438 * 15 14 13 32 32 H 1.09000 * 110.56012 * 298.56955 * 18 17 16 33 33 H 1.09000 * 110.57057 * 61.42427 * 18 17 16 34 34 H 1.09002 * 110.72846 * 241.63246 * 19 18 17 35 35 H 1.09005 * 110.43196 * 118.95905 * 19 18 17 36 36 H 1.08007 * 120.03134 * 179.97438 * 23 16 15 37 37 H 1.08008 * 119.96429 * 180.02562 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 2.1491 -0.0072 2.3758 6 1 1.8925 1.0407 2.4241 7 6 2.6123 -0.6613 3.5092 8 7 2.9254 -1.9384 3.4501 9 14 2.7913 0.2708 5.1180 10 1 1.5239 0.1797 5.8866 11 1 3.8962 -0.3221 5.9134 12 1 3.0960 1.6960 4.8330 13 6 2.0324 -0.7105 -1.2304 14 6 2.4586 0.0209 -2.3237 15 6 2.9190 -0.6272 -3.4530 16 6 2.9542 -2.0149 -3.4896 17 7 3.4149 -2.6749 -4.6345 18 6 3.5087 -4.1333 -4.8018 19 6 4.0663 -4.3039 -6.2281 20 8 4.2349 -2.9381 -6.7066 21 6 3.8477 -2.0811 -5.7552 22 8 3.8846 -0.8745 -5.8945 23 6 2.5255 -2.7466 -2.3899 24 6 2.0661 -2.0924 -1.2636 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 2.2491 -1.6316 1.1528 29 1 3.2495 -2.3954 4.2421 30 1 2.4306 1.1002 -2.2949 31 1 3.2514 -0.0554 -4.3068 32 1 4.1926 -4.5595 -4.0677 33 1 2.5235 -4.5923 -4.7204 34 1 3.3587 -4.8444 -6.8568 35 1 5.0255 -4.8210 -6.2024 36 1 2.5513 -3.8260 -2.4154 37 1 1.7329 -2.6610 -0.4078 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181266838.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:10:28 Heat of formation + Delta-G solvation = -42.797410 kcal Electronic energy + Delta-G solvation = -20807.592121 eV Core-core repulsion = 17550.003512 eV Total energy + Delta-G solvation = -3257.588609 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.95436 -40.44710 -38.57813 -37.62740 -36.04519 -33.95307 -31.98259 -31.47556 -30.39840 -29.25353 -26.10501 -25.20610 -24.94603 -22.90796 -22.54071 -21.22719 -19.40440 -19.12179 -18.49200 -18.00303 -17.23596 -16.48927 -16.37857 -15.78926 -15.53031 -15.18726 -15.18217 -15.02053 -14.83641 -14.45215 -14.25662 -14.13925 -13.48493 -13.40844 -13.22194 -13.02400 -12.77408 -12.52221 -12.47028 -12.16345 -11.83783 -11.72889 -11.60021 -11.29981 -11.15546 -10.92166 -9.90560 -9.03071 -8.88907 -7.92043 -5.19731 0.24935 0.44532 1.18476 1.49255 1.50229 1.53862 1.58661 2.42948 2.57932 2.84797 3.22846 3.42507 3.48594 3.89877 3.93035 4.02238 4.04559 4.15569 4.35259 4.47467 4.49394 4.57098 4.66436 4.68671 4.76399 4.80442 5.03188 5.07649 5.20543 5.30760 5.35764 5.45072 5.52793 5.54237 5.81840 6.03428 6.21804 6.30773 6.73670 7.37311 8.11481 8.36898 9.31497 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.032516 B = 0.003654 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.914081 B = 7661.332217 C = 8002.607544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.203 3.797 3 H 0.050 0.950 4 N -0.733 5.733 5 C -0.239 4.239 6 H 0.075 0.925 7 C -0.073 4.073 8 N -0.968 5.968 9 Si 0.970 3.030 10 H -0.287 1.287 11 H -0.297 1.297 12 H -0.272 1.272 13 C -0.101 4.101 14 C -0.090 4.090 15 C -0.165 4.165 16 C 0.163 3.837 17 N -0.566 5.566 18 C 0.049 3.951 19 C 0.040 3.960 20 O -0.336 6.336 21 C 0.638 3.362 22 O -0.551 6.551 23 C -0.137 4.137 24 C -0.088 4.088 25 H 0.043 0.957 26 H 0.066 0.934 27 H 0.045 0.955 28 H 0.376 0.624 29 H 0.250 0.750 30 H 0.136 0.864 31 H 0.143 0.857 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.142 0.858 35 H 0.138 0.862 36 H 0.158 0.842 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.520 -8.482 -19.340 21.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.095 3.905 3 H 0.068 0.932 4 N -0.375 5.375 5 C -0.371 4.371 6 H 0.093 0.907 7 C -0.266 4.266 8 N -0.619 5.619 9 Si 0.799 3.201 10 H -0.214 1.214 11 H -0.223 1.223 12 H -0.197 1.197 13 C -0.103 4.103 14 C -0.109 4.109 15 C -0.185 4.185 16 C 0.070 3.930 17 N -0.303 5.303 18 C -0.071 4.071 19 C -0.033 4.033 20 O -0.246 6.246 21 C 0.394 3.606 22 O -0.439 6.439 23 C -0.157 4.157 24 C -0.107 4.107 25 H 0.062 0.938 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.210 0.790 29 H 0.059 0.941 30 H 0.154 0.846 31 H 0.160 0.840 32 H 0.138 0.862 33 H 0.144 0.856 34 H 0.160 0.840 35 H 0.156 0.844 36 H 0.175 0.825 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.372 -7.736 -19.610 21.084 hybrid contribution 0.234 0.111 1.246 1.273 sum -0.138 -7.625 -18.364 19.884 Atomic orbital electron populations 1.22248 0.96636 1.01138 1.00754 1.19331 0.93081 0.94509 0.83557 0.93177 1.42693 1.78527 1.10487 1.05773 1.19633 1.34940 0.94305 0.88239 0.90697 1.25482 1.02920 0.96923 1.01229 1.69805 1.52630 1.10117 1.29350 0.85188 0.76863 0.78027 0.79984 1.21426 1.22321 1.19671 1.20267 0.99826 0.94547 0.95635 1.20994 0.97587 1.00521 0.91838 1.21489 1.03439 0.93330 1.00222 1.17386 0.98920 0.91247 0.85437 1.45417 1.62730 1.09340 1.12800 1.23458 1.06550 0.78008 0.99133 1.24878 1.06616 0.78863 0.92939 1.87291 1.78995 1.20228 1.38068 1.18634 0.76653 0.85652 0.79657 1.90906 1.60056 1.11614 1.81339 1.20823 1.02658 1.00835 0.91406 1.20857 0.98355 0.94002 0.97444 0.93823 0.91537 0.93591 0.79030 0.94073 0.84619 0.83994 0.86194 0.85623 0.84027 0.84413 0.82479 0.86043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.31 9.47 71.98 0.68 -4.63 16 2 C 0.20 8.22 3.09 44.24 0.14 8.35 16 3 H 0.05 2.06 7.94 -2.39 -0.02 2.04 16 4 N -0.73 -36.87 5.07 -326.50 -1.66 -38.52 16 5 C -0.24 -13.27 9.93 84.03 0.83 -12.44 16 6 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 7 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 8 N -0.97 -58.56 13.06 21.65 0.28 -58.28 16 9 Si 0.97 46.10 29.55 68.60 2.03 48.12 16 10 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 11 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 13 C -0.10 -3.60 4.96 -19.85 -0.10 -3.70 16 14 C -0.09 -2.95 9.66 22.25 0.21 -2.74 16 15 C -0.16 -5.27 9.31 22.39 0.21 -5.06 16 16 C 0.16 4.53 6.63 38.15 0.25 4.78 16 17 N -0.57 -12.61 3.16 -759.79 -2.40 -15.02 16 18 C 0.05 0.46 6.49 86.64 0.56 1.02 16 19 C 0.04 0.26 8.23 72.35 0.60 0.86 16 20 O -0.34 -6.72 11.09 -47.42 -0.53 -7.24 16 21 C 0.64 17.16 8.77 129.91 1.14 18.30 16 22 O -0.55 -19.50 14.75 19.65 0.29 -19.21 16 23 C -0.14 -3.60 9.49 22.39 0.21 -3.38 16 24 C -0.09 -2.89 9.05 22.25 0.20 -2.69 16 25 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.38 19.88 6.06 -92.71 -0.56 19.32 16 29 H 0.25 14.70 8.31 -92.70 -0.77 13.93 16 30 H 0.14 3.99 8.03 -2.91 -0.02 3.97 16 31 H 0.14 4.86 5.24 -2.91 -0.02 4.85 16 32 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.14 0.05 8.14 -2.39 -0.02 0.03 16 35 H 0.14 0.15 8.14 -2.38 -0.02 0.13 16 36 H 0.16 2.89 7.31 -2.91 -0.02 2.87 16 37 H 0.12 4.27 6.91 -2.91 -0.02 4.25 16 Total: -1.00 -75.02 313.19 3.96 -71.07 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.53 Total: 24.12 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 5.41 Total: -5.04 kcal Atomic # 7 Polarization: -108.04 SS G_CDS: -3.78 Total: -111.82 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.24 Total: -26.45 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.12 kcal Total: -75.02 3.96 -71.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181266838.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.269 kcal (2) G-P(sol) polarization free energy of solvation -75.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds