Wall clock time and date at job start Mon Mar 30 2020 20:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47393 * 2 1 4 4 C 1.46500 * 120.00094 * 274.51382 * 3 2 1 5 5 C 1.52998 * 109.47047 * 274.99631 * 4 3 2 6 6 C 1.52997 * 117.49736 * 243.62384 * 5 4 3 7 7 C 1.52995 * 117.49658 * 175.00144 * 5 4 3 8 8 S 1.65601 * 119.99741 * 94.51201 * 3 2 1 9 9 O 1.42100 * 106.40158 * 342.94143 * 8 3 2 10 10 O 1.42101 * 106.40172 * 210.02561 * 8 3 2 11 11 N 1.65597 * 107.22081 * 96.48159 * 8 3 2 12 12 C 1.46495 * 119.99941 * 296.69713 * 11 8 3 13 13 H 1.09006 * 109.47421 * 24.33882 * 12 11 8 14 14 C 1.53003 * 109.46998 * 264.33878 * 12 11 8 15 15 C 1.50709 * 109.47344 * 144.34167 * 12 11 8 16 16 H 1.07995 * 119.99688 * 4.18477 * 15 12 11 17 17 C 1.37871 * 120.00089 * 184.19149 * 15 12 11 18 18 N 1.31509 * 120.00184 * 196.26288 * 17 15 12 19 19 Si 1.86804 * 120.00005 * 16.26521 * 17 15 12 20 20 H 1.48500 * 109.47272 * 94.52453 * 19 17 15 21 21 H 1.48503 * 109.47209 * 214.51962 * 19 17 15 22 22 H 1.48500 * 109.47416 * 334.52203 * 19 17 15 23 23 H 1.09003 * 109.47117 * 185.04707 * 1 2 3 24 24 H 1.08995 * 109.47087 * 305.04459 * 1 2 3 25 25 H 1.09006 * 109.47006 * 65.04603 * 1 2 3 26 26 H 1.09005 * 109.47307 * 239.99956 * 2 1 3 27 27 H 1.08999 * 109.46726 * 120.00327 * 2 1 3 28 28 H 1.08998 * 109.46981 * 34.99911 * 4 3 2 29 29 H 1.08999 * 109.46756 * 154.99906 * 4 3 2 30 30 H 1.08998 * 115.54749 * 29.33092 * 5 4 3 31 31 H 1.08997 * 117.50287 * 0.02562 * 6 5 4 32 32 H 1.09004 * 117.49784 * 145.02538 * 6 5 4 33 33 H 1.09005 * 117.49578 * 214.97949 * 7 5 4 34 34 H 1.08994 * 117.50016 * 359.97438 * 7 5 4 35 35 H 0.97005 * 120.00302 * 116.68930 * 11 8 3 36 36 H 1.08997 * 109.47041 * 63.81951 * 14 12 11 37 37 H 1.09004 * 109.47128 * 183.81626 * 14 12 11 38 38 H 1.09004 * 109.47072 * 303.81576 * 14 12 11 39 39 H 0.97003 * 120.00330 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1685 2.1051 -1.2648 5 6 3.5304 1.7786 -1.8808 6 6 4.5291 2.9271 -2.0360 7 6 3.8325 2.3472 -3.2686 8 16 2.4008 2.1241 1.4297 9 8 1.7897 1.3559 2.4572 10 8 2.1493 3.5100 1.2416 11 7 4.0360 1.9699 1.6404 12 6 4.6329 0.6407 1.7921 13 1 3.9852 -0.1036 1.3285 14 6 4.7941 0.3207 3.2796 15 6 5.9836 0.6172 1.1240 16 1 6.3892 1.5211 0.6943 17 6 6.7012 -0.5584 1.0611 18 7 7.9853 -0.5306 0.7787 19 14 5.8496 -2.1907 1.3771 20 1 5.4227 -2.7846 0.0847 21 1 6.7895 -3.1154 2.0602 22 1 4.6595 -1.9698 2.2374 23 1 -0.3633 -1.0237 0.0904 24 1 -0.3633 0.5901 0.8413 25 1 -0.3633 0.4336 -0.9318 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.3774 1.8042 -1.9517 29 1 2.1009 3.1771 -1.0800 30 1 3.9297 0.7926 -1.6429 31 1 4.2161 3.9153 -1.6990 32 1 5.5859 2.6970 -1.9003 33 1 4.4310 1.7354 -3.9437 34 1 3.0609 2.9535 -3.7430 35 1 4.5988 2.7597 1.6632 36 1 3.8117 0.2709 3.7490 37 1 5.2997 -0.6383 3.3922 38 1 5.3858 1.1017 3.7571 39 1 8.4904 -1.3576 0.7348 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183857778.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:10:38 Heat of formation + Delta-G solvation = -77.166180 kcal Electronic energy + Delta-G solvation = -21427.339365 eV Core-core repulsion = 18303.704366 eV Total energy + Delta-G solvation = -3123.634999 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.129 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.98634 -38.40888 -37.30798 -36.93694 -36.55932 -34.20329 -31.50431 -30.76599 -27.38273 -27.09972 -23.83733 -23.10872 -22.72694 -21.60456 -20.34203 -19.25195 -18.67697 -18.01322 -17.58692 -16.94028 -16.13076 -15.76547 -15.40900 -15.22108 -14.87590 -14.71754 -14.35430 -13.96167 -13.85853 -13.64754 -13.52526 -13.29114 -13.18152 -13.09886 -12.91516 -12.54499 -12.53281 -12.42696 -12.24217 -12.17582 -11.85112 -11.48921 -11.37306 -11.22590 -10.76552 -10.57220 -10.25025 -10.01953 -8.29298 -6.27937 -0.30853 1.34927 1.41483 1.48297 1.93605 2.35848 2.58788 2.99163 3.04946 3.40468 3.78295 3.88060 4.08150 4.23602 4.30164 4.36501 4.38413 4.48113 4.60776 4.62551 4.80267 4.83080 4.86096 4.89184 4.94615 4.96823 5.12837 5.24354 5.34881 5.36162 5.37490 5.46962 5.52501 5.53131 5.73361 6.29653 6.36412 6.76288 7.34603 8.86294 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.015372 B = 0.009009 C = 0.007667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.110249 B = 3107.305186 C = 3651.239621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.108 3.892 3 N -0.997 5.997 4 C 0.152 3.848 5 C -0.180 4.180 6 C -0.192 4.192 7 C -0.152 4.152 8 S 2.794 3.206 9 O -1.005 7.005 10 O -1.010 7.010 11 N -1.105 6.105 12 C 0.260 3.740 13 H 0.039 0.961 14 C -0.166 4.166 15 C -0.517 4.517 16 H 0.049 0.951 17 C 0.030 3.970 18 N -0.932 5.932 19 Si 0.906 3.094 20 H -0.268 1.268 21 H -0.287 1.287 22 H -0.231 1.231 23 H 0.084 0.916 24 H 0.042 0.958 25 H 0.075 0.925 26 H 0.097 0.903 27 H 0.067 0.933 28 H 0.114 0.886 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.118 0.882 35 H 0.413 0.587 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.415 1.385 -6.051 14.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.017 4.017 3 N -0.837 5.837 4 C 0.027 3.973 5 C -0.200 4.200 6 C -0.229 4.229 7 C -0.190 4.190 8 S 2.803 3.197 9 O -0.989 6.989 10 O -0.995 6.995 11 N -0.865 5.865 12 C 0.153 3.847 13 H 0.057 0.943 14 C -0.225 4.225 15 C -0.556 4.556 16 H 0.067 0.933 17 C -0.169 4.169 18 N -0.571 5.571 19 Si 0.729 3.271 20 H -0.194 1.194 21 H -0.213 1.213 22 H -0.153 1.153 23 H 0.102 0.898 24 H 0.061 0.939 25 H 0.094 0.906 26 H 0.115 0.885 27 H 0.085 0.915 28 H 0.132 0.868 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.136 0.864 35 H 0.246 0.754 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.015 1.542 -5.472 15.124 hybrid contribution 1.171 -0.652 0.026 1.340 sum -12.844 0.890 -5.446 13.980 Atomic orbital electron populations 1.22175 0.94376 1.03368 1.02461 1.21479 0.95671 0.80821 1.03768 1.57698 1.79621 1.24313 1.22064 1.21051 0.95755 0.96168 0.84290 1.22792 0.97305 0.98789 1.01090 1.22982 0.97911 0.98001 1.04012 1.22979 1.03122 1.03079 0.89797 1.01347 0.72879 0.72132 0.73387 1.93543 1.76388 1.72741 1.56181 1.93521 1.85175 1.33883 1.86879 1.55597 1.26729 1.14911 1.89279 1.18518 0.93492 0.79884 0.92762 0.94307 1.22576 1.00358 1.01063 0.98549 1.21148 1.01087 0.96307 1.37046 0.93271 1.25552 0.94547 1.02263 0.94574 1.70086 1.07861 1.28699 1.50463 0.86478 0.80718 0.80318 0.79563 1.19389 1.21328 1.15345 0.89751 0.93882 0.90571 0.88463 0.91500 0.86765 0.89650 0.88851 0.88419 0.90869 0.88723 0.86426 0.75377 0.93215 0.93108 0.92829 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 10.24 71.98 0.74 -2.66 16 2 C 0.11 2.74 5.82 86.38 0.50 3.25 16 3 N -1.00 -28.86 2.84 -515.79 -1.47 -30.32 16 4 C 0.15 3.73 5.97 86.38 0.52 4.25 16 5 C -0.18 -4.93 6.01 -10.80 -0.06 -5.00 16 6 C -0.19 -5.54 10.18 30.59 0.31 -5.23 16 7 C -0.15 -3.42 10.25 30.59 0.31 -3.10 16 8 S 2.79 99.80 5.99 -56.49 -0.34 99.46 16 9 O -1.01 -39.89 16.34 -128.00 -2.09 -41.98 16 10 O -1.01 -38.66 16.84 -128.00 -2.16 -40.81 16 11 N -1.11 -42.53 5.51 -172.51 -0.95 -43.49 16 12 C 0.26 11.29 2.36 44.25 0.10 11.39 16 13 H 0.04 1.64 5.54 -2.38 -0.01 1.63 16 14 C -0.17 -7.02 8.82 71.98 0.63 -6.39 16 15 C -0.52 -26.55 9.19 25.60 0.24 -26.31 16 16 H 0.05 2.79 8.06 -2.91 -0.02 2.76 16 17 C 0.03 1.62 5.32 84.65 0.45 2.07 16 18 N -0.93 -54.23 13.96 21.44 0.30 -53.93 16 19 Si 0.91 39.92 25.78 68.60 1.77 41.69 16 20 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 21 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 22 H -0.23 -9.32 5.52 99.48 0.55 -8.77 16 23 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.08 1.26 8.14 -2.38 -0.02 1.25 16 26 H 0.10 2.11 8.11 -2.38 -0.02 2.09 16 27 H 0.07 1.93 6.68 -2.39 -0.02 1.91 16 28 H 0.11 2.04 8.11 -2.39 -0.02 2.02 16 29 H 0.09 2.16 6.74 -2.39 -0.02 2.15 16 30 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 31 H 0.10 2.65 8.03 -2.39 -0.02 2.63 16 32 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 34 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.41 15.36 8.84 -96.74 -0.85 14.50 16 36 H 0.05 1.97 7.78 -2.39 -0.02 1.95 16 37 H 0.05 2.15 5.00 -2.38 -0.01 2.14 16 38 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -64.47 327.49 -1.17 -65.64 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: 0.03 Total: 31.48 kcal Atomic # 6 Polarization: -31.47 SS G_CDS: 3.74 Total: -27.73 kcal Atomic # 7 Polarization: -125.62 SS G_CDS: -2.12 Total: -127.73 kcal Atomic # 8 Polarization: -78.55 SS G_CDS: -4.25 Total: -82.79 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 1.77 Total: 41.69 kcal Atomic # 16 Polarization: 99.80 SS G_CDS: -0.34 Total: 99.46 kcal Total: -64.47 -1.17 -65.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183857778.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.527 kcal (2) G-P(sol) polarization free energy of solvation -64.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds