Wall clock time and date at job start Mon Mar 30 2020 20:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47495 * 2 1 4 4 C 1.50700 * 109.47423 * 239.99560 * 2 1 3 5 5 H 1.07992 * 120.00337 * 275.00537 * 4 2 1 6 6 C 1.37883 * 119.99343 * 95.00252 * 4 2 1 7 7 N 1.31516 * 119.99561 * 184.91566 * 6 4 2 8 8 Si 1.86800 * 120.00399 * 4.92038 * 6 4 2 9 9 H 1.48497 * 109.47065 * 84.83170 * 8 6 4 10 10 H 1.48503 * 109.46904 * 204.83268 * 8 6 4 11 11 H 1.48505 * 109.46721 * 324.82855 * 8 6 4 12 12 N 1.46506 * 109.47313 * 120.00105 * 2 1 3 13 13 C 1.34776 * 119.99711 * 275.00500 * 12 2 1 14 14 O 1.21474 * 120.00358 * 359.97438 * 13 12 2 15 15 C 1.48459 * 120.00117 * 179.97438 * 13 12 2 16 16 C 1.38295 * 120.53965 * 179.97438 * 15 13 12 17 17 C 1.40960 * 119.01452 * 180.02562 * 16 15 13 18 18 O 1.22008 * 119.96186 * 180.02562 * 17 16 15 19 19 N 1.34593 * 120.07220 * 0.02861 * 17 16 15 20 20 H 0.96999 * 119.44301 * 179.97438 * 19 17 16 21 21 C 1.35706 * 121.12317 * 359.97396 * 19 17 16 22 22 C 1.50696 * 119.50240 * 179.97438 * 21 19 17 23 23 C 1.52998 * 117.49933 * 351.25335 * 22 21 19 24 24 C 1.53000 * 117.49732 * 59.91477 * 22 21 19 25 25 C 1.35268 * 120.99440 * 0.27701 * 21 19 17 26 26 H 1.08997 * 109.47227 * 55.04164 * 1 2 3 27 27 H 1.09003 * 109.47166 * 175.03519 * 1 2 3 28 28 H 1.08993 * 109.47329 * 295.03565 * 1 2 3 29 29 H 0.97007 * 120.00024 * 180.02562 * 7 6 4 30 30 H 0.96996 * 120.00283 * 94.99537 * 12 2 1 31 31 H 1.07996 * 120.49386 * 0.05367 * 16 15 13 32 32 H 1.09001 * 115.54902 * 205.58439 * 22 21 19 33 33 H 1.09001 * 117.50083 * 214.99999 * 23 22 21 34 34 H 1.09003 * 117.49769 * 0.02562 * 23 22 21 35 35 H 1.08995 * 117.50105 * 359.97328 * 24 22 21 36 36 H 1.09002 * 117.49549 * 144.99650 * 24 22 21 37 37 H 1.08002 * 120.06090 * 179.70323 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1354 -1.7855 -1.2290 6 6 2.3603 0.0121 -2.3580 7 7 2.7060 -0.6132 -3.4621 8 14 2.3137 1.8791 -2.3174 9 1 3.5992 2.3948 -1.7821 10 1 2.1059 2.3991 -3.6928 11 1 1.1986 2.3275 -1.4450 12 7 2.0183 -0.6907 1.1962 13 6 2.1469 -0.0183 2.3572 14 8 1.8584 1.1604 2.4117 15 6 2.6413 -0.7182 3.5695 16 6 2.7781 -0.0390 4.7664 17 6 3.2509 -0.7350 5.8973 18 8 3.3777 -0.1529 6.9620 19 7 3.5626 -2.0410 5.8038 20 1 3.8875 -2.5109 6.5877 21 6 3.4301 -2.7116 4.6315 22 6 3.7904 -4.1735 4.5680 23 6 4.4850 -4.7835 5.7871 24 6 3.0250 -5.1301 5.4845 25 6 2.9853 -2.0862 3.5177 26 1 -0.3633 0.5888 -0.8422 27 1 -0.3634 -1.0238 -0.0889 28 1 -0.3633 0.4349 0.9310 29 1 2.9372 -0.1049 -4.2554 30 1 2.2490 -1.6318 1.1527 31 1 2.5259 1.0090 4.8337 32 1 4.0820 -4.5435 3.5851 33 1 5.2335 -5.5549 5.6063 34 1 4.6809 -4.1275 6.6353 35 1 2.2612 -4.7021 6.1337 36 1 2.8131 -6.1296 5.1044 37 1 2.8901 -2.6334 2.5914 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184340897.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:10:42 Heat of formation + Delta-G solvation = -44.835502 kcal Electronic energy + Delta-G solvation = -20798.006654 eV Core-core repulsion = 17540.329666 eV Total energy + Delta-G solvation = -3257.676987 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.59042 -40.68032 -39.09982 -37.09114 -36.78042 -34.76118 -34.26901 -31.65804 -31.05681 -27.34546 -26.74461 -24.91875 -23.38849 -23.11189 -22.13997 -21.42715 -19.72101 -19.43336 -18.32341 -18.08567 -17.31053 -16.95149 -16.76366 -16.15621 -16.05591 -15.83857 -15.37635 -15.05791 -14.53802 -14.38541 -14.17469 -13.61805 -13.52292 -13.30314 -13.04401 -12.92180 -12.79125 -12.46530 -12.44294 -11.88153 -11.66852 -11.57652 -11.45952 -11.40394 -11.23271 -10.97259 -10.81134 -9.92547 -9.08701 -8.38143 -6.43988 -0.73173 0.47896 1.30288 1.36288 1.45584 1.68978 1.73619 2.17070 2.28130 2.52200 2.91777 3.02596 3.13853 3.55476 3.68200 3.82870 3.97057 4.00844 4.12128 4.15036 4.45265 4.69885 4.74114 4.75162 4.81844 4.94603 5.02992 5.06014 5.09530 5.12164 5.20279 5.35431 5.45232 5.51287 5.64444 5.74100 6.10927 6.60426 6.75050 6.77733 7.18078 7.30431 8.76189 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.021954 B = 0.004510 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.100247 B = 6207.130349 C = 7013.622954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.230 3.770 3 H 0.031 0.969 4 C -0.523 4.523 5 H 0.066 0.934 6 C 0.039 3.961 7 N -0.925 5.925 8 Si 0.919 3.081 9 H -0.276 1.276 10 H -0.278 1.278 11 H -0.257 1.257 12 N -0.682 5.682 13 C 0.536 3.464 14 O -0.582 6.582 15 C -0.006 4.006 16 C -0.214 4.214 17 C 0.522 3.478 18 O -0.590 6.590 19 N -0.583 5.583 20 H 0.425 0.575 21 C 0.218 3.782 22 C -0.144 4.144 23 C -0.168 4.168 24 C -0.152 4.152 25 C -0.213 4.213 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.036 0.964 29 H 0.271 0.729 30 H 0.410 0.590 31 H 0.142 0.858 32 H 0.159 0.841 33 H 0.128 0.872 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.127 0.873 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.455 -12.978 16.456 21.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.127 3.873 3 H 0.049 0.951 4 C -0.562 4.562 5 H 0.084 0.916 6 C -0.162 4.162 7 N -0.564 5.564 8 Si 0.744 3.256 9 H -0.202 1.202 10 H -0.203 1.203 11 H -0.181 1.181 12 N -0.332 5.332 13 C 0.323 3.677 14 O -0.464 6.464 15 C -0.013 4.013 16 C -0.238 4.238 17 C 0.324 3.676 18 O -0.476 6.476 19 N -0.217 5.217 20 H 0.267 0.733 21 C 0.108 3.892 22 C -0.163 4.163 23 C -0.205 4.205 24 C -0.189 4.189 25 C -0.235 4.235 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.248 0.752 31 H 0.159 0.841 32 H 0.177 0.823 33 H 0.147 0.853 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.145 0.855 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 2.312 -11.687 16.770 20.571 hybrid contribution 0.227 0.773 -0.263 0.847 sum 2.539 -10.914 16.507 19.952 Atomic orbital electron populations 1.22121 0.96715 1.01709 0.99573 1.19019 0.92288 0.93255 0.82753 0.95126 1.21132 1.44327 0.95096 0.95611 0.91611 1.25509 0.93768 1.01840 0.95097 1.69955 1.46406 1.37588 1.02417 0.86177 0.79646 0.82086 0.77683 1.20187 1.20307 1.18116 1.46321 1.63577 1.14649 1.08635 1.18822 0.78386 0.86401 0.84119 1.90711 1.52590 1.17405 1.85649 1.20490 0.93559 0.94786 0.92511 1.22475 1.07468 1.02154 0.91674 1.16819 0.80024 0.81487 0.89286 1.90965 1.58632 1.67034 1.31001 1.43408 1.54457 1.10644 1.13195 0.73349 1.19877 0.91424 0.93727 0.84222 1.21499 1.08574 0.85747 1.00448 1.23257 0.96868 1.03540 0.96849 1.23254 0.94902 1.00302 1.00489 1.20615 1.09810 0.92657 1.00392 0.93168 0.91770 0.94533 0.91993 0.75201 0.84056 0.82301 0.85345 0.88457 0.88595 0.85468 0.80855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.88 9.47 71.98 0.68 -5.20 16 2 C 0.23 10.45 2.22 44.24 0.10 10.55 16 3 H 0.03 1.55 4.73 -2.39 -0.01 1.53 16 4 C -0.52 -26.78 9.05 25.60 0.23 -26.55 16 5 H 0.07 3.50 8.06 -2.91 -0.02 3.48 16 6 C 0.04 2.11 5.47 84.66 0.46 2.57 16 7 N -0.93 -53.09 13.96 21.45 0.30 -52.79 16 8 Si 0.92 43.48 26.99 68.60 1.85 45.33 16 9 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.26 -11.94 6.82 99.48 0.68 -11.26 16 12 N -0.68 -25.60 5.03 -448.39 -2.25 -27.85 16 13 C 0.54 20.46 7.77 86.97 0.68 21.13 16 14 O -0.58 -27.02 16.06 -3.63 -0.06 -27.07 16 15 C -0.01 -0.19 5.91 -19.82 -0.12 -0.31 16 16 C -0.21 -6.83 9.61 22.95 0.22 -6.61 16 17 C 0.52 15.14 7.70 84.94 0.65 15.80 16 18 O -0.59 -21.19 17.93 -5.34 -0.10 -21.28 16 19 N -0.58 -11.08 5.18 -307.51 -1.59 -12.67 16 20 H 0.42 5.81 6.60 -92.71 -0.61 5.19 16 21 C 0.22 3.50 6.46 41.27 0.27 3.76 16 22 C -0.14 -1.21 6.00 -11.54 -0.07 -1.28 16 23 C -0.17 -0.87 9.94 30.62 0.30 -0.57 16 24 C -0.15 -0.89 10.24 30.62 0.31 -0.57 16 25 C -0.21 -4.42 9.15 22.30 0.20 -4.22 16 26 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.27 14.66 8.31 -92.70 -0.77 13.89 16 30 H 0.41 12.65 6.70 -92.71 -0.62 12.03 16 31 H 0.14 5.02 7.69 -2.91 -0.02 5.00 16 32 H 0.16 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.10 0.47 6.37 -2.39 -0.02 0.45 16 35 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.17 2.83 6.50 -2.91 -0.02 2.82 16 Total: -1.00 -72.94 317.08 1.94 -71.00 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -0.14 Total: 16.83 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 3.93 Total: 8.51 kcal Atomic # 7 Polarization: -89.76 SS G_CDS: -3.55 Total: -93.31 kcal Atomic # 8 Polarization: -48.20 SS G_CDS: -0.15 Total: -48.36 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.85 Total: 45.33 kcal Total: -72.94 1.94 -71.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184340897.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.162 kcal (2) G-P(sol) polarization free energy of solvation -72.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds