Wall clock time and date at job start Mon Mar 30 2020 20:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46660 * 2 1 4 4 C 1.52997 * 109.47283 * 240.00261 * 2 1 3 5 5 S 1.81401 * 109.47278 * 64.99611 * 4 2 1 6 6 C 1.81399 * 103.00032 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.46948 * 180.02562 * 6 5 4 8 8 C 1.50700 * 115.55484 * 65.32936 * 7 6 5 9 9 H 1.07999 * 120.00289 * 265.65793 * 8 7 6 10 10 C 1.37879 * 119.99763 * 85.64626 * 8 7 6 11 11 N 1.31513 * 120.00125 * 353.69382 * 10 8 7 12 12 Si 1.86803 * 119.99806 * 173.69133 * 10 8 7 13 13 H 1.48494 * 109.47269 * 90.00163 * 12 10 8 14 14 H 1.48501 * 109.47163 * 210.00140 * 12 10 8 15 15 H 1.48503 * 109.47034 * 330.00287 * 12 10 8 16 16 C 1.52999 * 117.49770 * 279.65813 * 7 6 5 17 17 C 1.52999 * 117.49685 * 210.99891 * 7 6 5 18 18 C 1.50700 * 109.46948 * 119.99688 * 2 1 3 19 19 C 1.38231 * 119.99857 * 59.73319 * 18 2 1 20 20 C 1.38237 * 119.99991 * 179.80311 * 19 18 2 21 21 C 1.38237 * 119.99619 * 0.40167 * 20 19 18 22 22 C 1.38235 * 120.00171 * 359.84737 * 21 20 19 23 23 C 1.38225 * 119.99966 * 359.96250 * 22 21 20 24 24 H 1.09004 * 109.47181 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47493 * 299.99802 * 1 2 3 26 26 H 1.09000 * 109.47558 * 59.99805 * 1 2 3 27 27 H 1.08998 * 109.47371 * 184.99503 * 4 2 1 28 28 H 1.09001 * 109.47050 * 304.99937 * 4 2 1 29 29 H 1.08999 * 109.47125 * 299.99857 * 6 5 4 30 30 H 1.09001 * 109.47159 * 60.00137 * 6 5 4 31 31 H 0.97010 * 119.99748 * 175.01354 * 11 10 8 32 32 H 1.08996 * 117.49974 * 359.97438 * 16 7 6 33 33 H 1.09005 * 117.49758 * 145.02284 * 16 7 6 34 34 H 1.09003 * 117.50020 * 214.97829 * 17 7 6 35 35 H 1.08997 * 117.50280 * 359.97438 * 17 7 6 36 36 H 1.07994 * 119.99968 * 359.97438 * 19 18 2 37 37 H 1.07999 * 120.00129 * 180.22848 * 20 19 18 38 38 H 1.08001 * 119.99735 * 179.83181 * 21 20 19 39 39 H 1.08002 * 119.99813 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.00014 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 16 1.5601 0.2157 -2.7266 6 6 2.2417 -0.7804 -4.0807 7 6 1.9171 -0.1127 -5.4185 8 6 2.5664 1.2272 -5.6508 9 1 2.0338 2.1348 -5.4080 10 6 3.8407 1.2944 -6.1730 11 7 4.5367 0.1931 -6.3525 12 14 4.5784 2.9498 -6.6257 13 1 5.2975 3.5087 -5.4528 14 1 5.5296 2.7763 -7.7529 15 1 3.4946 3.8805 -7.0314 16 6 0.5157 -0.3277 -5.9936 17 6 1.7206 -1.0225 -6.6328 18 6 2.0323 -0.7103 1.2305 19 6 1.6937 -2.0321 1.4521 20 6 2.1578 -2.6850 2.5788 21 6 2.9536 -2.0134 3.4880 22 6 3.2879 -0.6901 3.2690 23 6 2.8271 -0.0385 2.1404 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 3.1263 -0.7993 -1.2056 28 1 1.6054 -1.7197 -1.2952 29 1 3.3230 -0.8575 -3.9665 30 1 1.8017 -1.7774 -4.0556 31 1 5.4036 0.2325 -6.7863 32 1 -0.1748 -0.9452 -5.4192 33 1 0.0636 0.4999 -6.5403 34 1 2.0608 -0.6517 -7.5998 35 1 1.8231 -2.0966 -6.4788 36 1 1.0690 -2.5556 0.7436 37 1 1.8964 -3.7187 2.7500 38 1 3.3139 -2.5227 4.3696 39 1 3.9093 -0.1654 3.9797 40 1 3.0879 0.9955 1.9695 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594900621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:17 Heat of formation + Delta-G solvation = 28.433804 kcal Electronic energy + Delta-G solvation = -18334.727747 eV Core-core repulsion = 15626.521169 eV Total energy + Delta-G solvation = -2708.206577 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 276.124 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.51678 -36.54252 -35.32949 -31.90969 -30.98248 -29.71444 -27.85357 -26.85973 -25.25327 -23.39525 -22.52914 -21.09466 -20.14455 -19.08785 -16.98569 -16.22530 -15.64985 -15.14362 -14.90180 -14.60334 -14.09853 -14.06021 -13.70167 -13.46466 -13.34986 -13.05837 -12.68183 -12.25896 -12.10780 -11.83349 -11.43188 -11.36833 -11.19667 -10.97321 -10.86391 -10.70421 -10.67076 -10.43390 -10.14226 -9.62410 -9.20642 -8.98404 -8.78822 -8.74309 -8.40965 -7.98461 -6.74203 -6.02217 -4.07127 1.28692 1.33531 2.45307 3.32369 3.39160 3.43358 3.55807 3.73103 4.44334 4.71082 4.77088 4.92282 5.04693 5.08518 5.19112 5.27146 5.40832 5.43586 5.47186 5.51377 5.75323 5.84819 5.95079 5.99442 6.00524 6.08334 6.20315 6.24502 6.32643 6.42473 6.43250 6.45068 6.55923 6.65442 6.75778 6.83951 6.94338 7.08447 7.42933 7.51056 7.91046 8.42697 8.94643 9.58881 11.06981 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.022586 B = 0.003981 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.410423 B = 7032.567528 C = 7559.599390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.034 4.034 3 H 0.086 0.914 4 C -0.091 4.091 5 S -0.244 6.244 6 C -0.027 4.027 7 C 0.056 3.944 8 C -0.483 4.483 9 H 0.062 0.938 10 C 0.072 3.928 11 N -0.882 5.882 12 Si 0.888 3.112 13 H -0.280 1.280 14 H -0.287 1.287 15 H -0.273 1.273 16 C -0.204 4.204 17 C -0.150 4.150 18 C -0.066 4.066 19 C -0.114 4.114 20 C -0.121 4.121 21 C -0.129 4.129 22 C -0.120 4.120 23 C -0.116 4.116 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.045 0.955 31 H 0.259 0.741 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.559 -4.509 16.105 17.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.054 4.054 3 H 0.105 0.895 4 C -0.240 4.240 5 S -0.015 6.015 6 C -0.175 4.175 7 C 0.055 3.945 8 C -0.521 4.521 9 H 0.080 0.920 10 C -0.131 4.131 11 N -0.519 5.519 12 Si 0.716 3.284 13 H -0.206 1.206 14 H -0.213 1.213 15 H -0.198 1.198 16 C -0.242 4.242 17 C -0.190 4.190 18 C -0.068 4.068 19 C -0.132 4.132 20 C -0.139 4.139 21 C -0.147 4.147 22 C -0.138 4.138 23 C -0.134 4.134 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.912 -3.619 16.044 17.165 hybrid contribution 1.375 -0.498 -0.270 1.487 sum -3.537 -4.117 15.774 16.682 Atomic orbital electron populations 1.21886 0.93608 1.02146 1.02401 1.19901 0.96559 0.99204 0.89690 0.89530 1.23420 1.03405 1.01204 0.95957 1.86746 1.75173 1.40017 0.99557 1.23083 1.02670 0.96449 0.95320 1.18437 0.92847 0.95728 0.87505 1.20388 0.98955 0.90181 1.42563 0.91983 1.24940 0.96384 0.96297 0.95489 1.70016 1.12749 1.27040 1.42135 0.86665 0.79080 0.84605 0.78096 1.20569 1.21312 1.19825 1.23012 0.92102 1.02919 1.06160 1.22576 1.01342 0.95808 0.99240 1.19941 0.96887 0.94250 0.95693 1.21041 1.00150 0.94414 0.97565 1.21129 0.98243 0.99752 0.94733 1.21111 0.99168 0.94957 0.99514 1.21125 1.00078 0.94981 0.97630 1.21130 0.97823 1.00111 0.94342 0.92687 0.92871 0.90658 0.90765 0.91128 0.89983 0.93599 0.93120 0.91468 0.90311 0.89833 0.91954 0.86096 0.86278 0.86412 0.86237 0.85961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.83 37.16 0.33 -1.45 16 2 C -0.03 -0.46 2.56 -91.77 -0.23 -0.69 16 3 H 0.09 1.20 7.88 -51.93 -0.41 0.79 16 4 C -0.09 -1.43 5.13 37.16 0.19 -1.24 16 5 S -0.24 -4.83 20.24 -107.50 -2.18 -7.01 16 6 C -0.03 -0.61 5.80 37.16 0.22 -0.39 16 7 C 0.06 1.38 1.34 -155.66 -0.21 1.17 16 8 C -0.48 -13.14 8.49 -34.44 -0.29 -13.44 16 9 H 0.06 1.73 7.82 -52.49 -0.41 1.32 16 10 C 0.07 1.96 5.39 -17.82 -0.10 1.86 16 11 N -0.88 -24.82 12.90 55.43 0.71 -24.10 16 12 Si 0.89 21.28 29.55 -169.99 -5.02 16.26 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 14 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 16 C -0.20 -4.49 9.96 -26.69 -0.27 -4.76 16 17 C -0.15 -3.49 9.40 -26.69 -0.25 -3.74 16 18 C -0.07 -0.82 4.78 -104.62 -0.50 -1.32 16 19 C -0.11 -1.31 8.76 -39.58 -0.35 -1.66 16 20 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 21 C -0.13 -1.28 10.05 -39.58 -0.40 -1.68 16 22 C -0.12 -1.24 10.05 -39.59 -0.40 -1.64 16 23 C -0.12 -1.34 9.67 -39.59 -0.38 -1.72 16 24 H 0.05 0.64 7.37 -51.93 -0.38 0.25 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 1.03 7.13 -51.93 -0.37 0.66 16 27 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 28 H 0.07 1.04 7.59 -51.92 -0.39 0.64 16 29 H 0.08 2.03 8.14 -51.92 -0.42 1.60 16 30 H 0.05 0.95 8.09 -51.92 -0.42 0.53 16 31 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 34 H 0.08 2.07 8.14 -51.93 -0.42 1.64 16 35 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 36 H 0.12 1.30 7.16 -52.49 -0.38 0.92 16 37 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.12 1.28 7.95 -52.49 -0.42 0.86 16 LS Contribution 344.73 15.07 5.19 5.19 Total: -1.00 -28.34 344.73 -10.87 -39.21 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -6.54 Total: 2.79 kcal Atomic # 6 Polarization: -29.31 SS G_CDS: -3.04 Total: -32.34 kcal Atomic # 7 Polarization: -24.82 SS G_CDS: 0.71 Total: -24.10 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -4.83 SS G_CDS: -2.18 Total: -7.01 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.34 -10.87 -39.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594900621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.642 kcal (2) G-P(sol) polarization free energy of solvation -28.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds