Wall clock time and date at job start Mon Mar 30 2020 20:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46660 * 2 1 4 4 C 1.52997 * 109.47283 * 240.00261 * 2 1 3 5 5 S 1.81401 * 109.47278 * 64.99611 * 4 2 1 6 6 C 1.81399 * 103.00032 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.46948 * 180.02562 * 6 5 4 8 8 C 1.50700 * 115.55484 * 65.32936 * 7 6 5 9 9 H 1.07999 * 120.00289 * 265.65793 * 8 7 6 10 10 C 1.37879 * 119.99763 * 85.64626 * 8 7 6 11 11 N 1.31513 * 120.00125 * 353.69382 * 10 8 7 12 12 Si 1.86803 * 119.99806 * 173.69133 * 10 8 7 13 13 H 1.48494 * 109.47269 * 90.00163 * 12 10 8 14 14 H 1.48501 * 109.47163 * 210.00140 * 12 10 8 15 15 H 1.48503 * 109.47034 * 330.00287 * 12 10 8 16 16 C 1.52999 * 117.49770 * 279.65813 * 7 6 5 17 17 C 1.52999 * 117.49685 * 210.99891 * 7 6 5 18 18 C 1.50700 * 109.46948 * 119.99688 * 2 1 3 19 19 C 1.38231 * 119.99857 * 59.73319 * 18 2 1 20 20 C 1.38237 * 119.99991 * 179.80311 * 19 18 2 21 21 C 1.38237 * 119.99619 * 0.40167 * 20 19 18 22 22 C 1.38235 * 120.00171 * 359.84737 * 21 20 19 23 23 C 1.38225 * 119.99966 * 359.96250 * 22 21 20 24 24 H 1.09004 * 109.47181 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47493 * 299.99802 * 1 2 3 26 26 H 1.09000 * 109.47558 * 59.99805 * 1 2 3 27 27 H 1.08998 * 109.47371 * 184.99503 * 4 2 1 28 28 H 1.09001 * 109.47050 * 304.99937 * 4 2 1 29 29 H 1.08999 * 109.47125 * 299.99857 * 6 5 4 30 30 H 1.09001 * 109.47159 * 60.00137 * 6 5 4 31 31 H 0.97010 * 119.99748 * 175.01354 * 11 10 8 32 32 H 1.08996 * 117.49974 * 359.97438 * 16 7 6 33 33 H 1.09005 * 117.49758 * 145.02284 * 16 7 6 34 34 H 1.09003 * 117.50020 * 214.97829 * 17 7 6 35 35 H 1.08997 * 117.50280 * 359.97438 * 17 7 6 36 36 H 1.07994 * 119.99968 * 359.97438 * 19 18 2 37 37 H 1.07999 * 120.00129 * 180.22848 * 20 19 18 38 38 H 1.08001 * 119.99735 * 179.83181 * 21 20 19 39 39 H 1.08002 * 119.99813 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.00014 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 16 1.5601 0.2157 -2.7266 6 6 2.2417 -0.7804 -4.0807 7 6 1.9171 -0.1127 -5.4185 8 6 2.5664 1.2272 -5.6508 9 1 2.0338 2.1348 -5.4080 10 6 3.8407 1.2944 -6.1730 11 7 4.5367 0.1931 -6.3525 12 14 4.5784 2.9498 -6.6257 13 1 5.2975 3.5087 -5.4528 14 1 5.5296 2.7763 -7.7529 15 1 3.4946 3.8805 -7.0314 16 6 0.5157 -0.3277 -5.9936 17 6 1.7206 -1.0225 -6.6328 18 6 2.0323 -0.7103 1.2305 19 6 1.6937 -2.0321 1.4521 20 6 2.1578 -2.6850 2.5788 21 6 2.9536 -2.0134 3.4880 22 6 3.2879 -0.6901 3.2690 23 6 2.8271 -0.0385 2.1404 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 3.1263 -0.7993 -1.2056 28 1 1.6054 -1.7197 -1.2952 29 1 3.3230 -0.8575 -3.9665 30 1 1.8017 -1.7774 -4.0556 31 1 5.4036 0.2325 -6.7863 32 1 -0.1748 -0.9452 -5.4192 33 1 0.0636 0.4999 -6.5403 34 1 2.0608 -0.6517 -7.5998 35 1 1.8231 -2.0966 -6.4788 36 1 1.0690 -2.5556 0.7436 37 1 1.8964 -3.7187 2.7500 38 1 3.3139 -2.5227 4.3696 39 1 3.9093 -0.1654 3.9797 40 1 3.0879 0.9955 1.9695 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594900621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:17 Heat of formation + Delta-G solvation = 17.694864 kcal Electronic energy + Delta-G solvation = -18335.193422 eV Core-core repulsion = 15626.521169 eV Total energy + Delta-G solvation = -2708.672253 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 276.124 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.36852 -38.40906 -36.32958 -33.98752 -31.78191 -30.60812 -29.54670 -28.17342 -27.27854 -24.32119 -23.35248 -22.92042 -21.35052 -20.77959 -18.14433 -17.84196 -16.87753 -16.61126 -16.21567 -16.10367 -15.65515 -15.17010 -15.04155 -14.91222 -14.39374 -14.21785 -13.97222 -13.77271 -13.42116 -13.12695 -12.93289 -12.88490 -12.82593 -12.36663 -12.29175 -12.25908 -12.02960 -11.71398 -11.65086 -11.45390 -10.84955 -10.64942 -10.44053 -9.84850 -9.79531 -9.58577 -8.34807 -8.10450 -6.20369 0.43236 0.52417 0.96675 1.40591 1.42745 1.52005 1.97634 2.44333 2.90023 3.18532 3.54648 3.72169 3.83806 4.02363 4.15065 4.19225 4.21293 4.31959 4.41739 4.43023 4.58341 4.61569 4.64397 4.69266 4.70626 4.79422 4.95348 5.00405 5.00790 5.11512 5.16373 5.20984 5.23399 5.35490 5.60226 5.61121 5.63102 5.64674 5.76334 5.78534 6.14645 6.39897 6.84002 7.47623 8.97815 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.022586 B = 0.003981 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.410423 B = 7032.567528 C = 7559.599390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.027 4.027 3 H 0.076 0.924 4 C -0.074 4.074 5 S -0.264 6.264 6 C -0.020 4.020 7 C 0.029 3.971 8 C -0.495 4.495 9 H 0.048 0.952 10 C 0.029 3.971 11 N -0.907 5.907 12 Si 0.943 3.057 13 H -0.279 1.279 14 H -0.282 1.282 15 H -0.270 1.270 16 C -0.181 4.181 17 C -0.153 4.153 18 C -0.081 4.081 19 C -0.125 4.125 20 C -0.126 4.126 21 C -0.131 4.131 22 C -0.125 4.125 23 C -0.131 4.131 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.084 0.916 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.259 0.741 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.126 0.874 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.022 -5.086 17.871 19.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.047 4.047 3 H 0.095 0.905 4 C -0.223 4.223 5 S -0.036 6.036 6 C -0.168 4.168 7 C 0.028 3.972 8 C -0.533 4.533 9 H 0.066 0.934 10 C -0.171 4.171 11 N -0.545 5.545 12 Si 0.769 3.231 13 H -0.205 1.205 14 H -0.208 1.208 15 H -0.195 1.195 16 C -0.218 4.218 17 C -0.193 4.193 18 C -0.083 4.083 19 C -0.143 4.143 20 C -0.143 4.143 21 C -0.148 4.148 22 C -0.143 4.143 23 C -0.149 4.149 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.144 0.856 37 H 0.159 0.841 38 H 0.161 0.839 39 H 0.158 0.842 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.386 -4.190 17.800 19.063 hybrid contribution 1.513 -0.343 -0.708 1.705 sum -3.873 -4.533 17.093 18.103 Atomic orbital electron populations 1.21833 0.92778 1.02711 1.02196 1.19811 0.97212 0.98505 0.89151 0.90511 1.23453 1.02811 1.01473 0.94550 1.86715 1.74757 1.41232 1.00848 1.22804 1.00824 0.97519 0.95668 1.18534 0.94729 0.95200 0.88778 1.20578 0.99239 0.91041 1.42442 0.93415 1.25567 0.96787 0.99123 0.95652 1.70104 1.12969 1.28574 1.42880 0.85802 0.78352 0.81162 0.77811 1.20492 1.20777 1.19488 1.22992 0.91365 1.02535 1.04931 1.22506 1.02366 0.96437 0.97953 1.19855 0.98123 0.94839 0.95490 1.21194 1.00562 0.94186 0.98375 1.21444 0.97841 1.00836 0.94213 1.21485 0.98376 0.94857 1.00128 1.21427 0.99966 0.95444 0.97477 1.21310 0.98082 1.00587 0.94958 0.91735 0.91610 0.92222 0.91808 0.89786 0.93162 0.91997 0.93204 0.89060 0.90478 0.91940 0.90552 0.85607 0.84129 0.83890 0.84180 0.85647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.83 71.98 0.64 -2.62 16 2 C -0.03 -0.71 2.56 -11.54 -0.03 -0.74 16 3 H 0.08 2.13 7.88 -2.38 -0.02 2.11 16 4 C -0.07 -2.30 5.13 71.98 0.37 -1.93 16 5 S -0.26 -10.46 20.24 -56.49 -1.14 -11.61 16 6 C -0.02 -0.89 5.80 71.98 0.42 -0.47 16 7 C 0.03 1.42 1.34 -52.93 -0.07 1.35 16 8 C -0.50 -27.31 8.49 25.60 0.22 -27.09 16 9 H 0.05 2.70 7.82 -2.91 -0.02 2.68 16 10 C 0.03 1.59 5.39 84.66 0.46 2.05 16 11 N -0.91 -51.81 12.90 21.45 0.28 -51.53 16 12 Si 0.94 44.09 29.55 68.60 2.03 46.11 16 13 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 14 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 15 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 16 C -0.18 -7.77 9.96 30.62 0.30 -7.47 16 17 C -0.15 -7.11 9.40 30.62 0.29 -6.83 16 18 C -0.08 -1.91 4.78 -19.87 -0.09 -2.01 16 19 C -0.13 -2.66 8.76 22.27 0.20 -2.46 16 20 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 21 C -0.13 -2.22 10.05 22.27 0.22 -1.99 16 22 C -0.13 -2.31 10.05 22.27 0.22 -2.08 16 23 C -0.13 -2.87 9.67 22.27 0.22 -2.66 16 24 H 0.06 1.38 7.37 -2.39 -0.02 1.37 16 25 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.06 1.59 7.13 -2.39 -0.02 1.57 16 27 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.08 2.36 7.59 -2.39 -0.02 2.35 16 29 H 0.05 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.06 2.52 8.09 -2.39 -0.02 2.50 16 31 H 0.26 14.19 8.32 -92.70 -0.77 13.42 16 32 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 33 H 0.08 3.31 8.14 -2.38 -0.02 3.29 16 34 H 0.06 3.13 8.14 -2.39 -0.02 3.11 16 35 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 36 H 0.13 2.46 7.16 -2.91 -0.02 2.44 16 37 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 38 H 0.14 1.66 8.06 -2.91 -0.02 1.63 16 39 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 40 H 0.13 2.54 7.95 -2.91 -0.02 2.52 16 Total: -1.00 -60.42 344.73 5.72 -54.70 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.99 Total: 19.32 kcal Atomic # 6 Polarization: -60.57 SS G_CDS: 3.57 Total: -56.99 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: 0.28 Total: -51.53 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: -10.46 SS G_CDS: -1.14 Total: -11.61 kcal Total: -60.42 5.72 -54.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594900621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.397 kcal (2) G-P(sol) polarization free energy of solvation -60.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds