Wall clock time and date at job start Mon Mar 30 2020 20:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.50703 * 109.46967 * 294.99707 * 4 2 1 6 6 H 1.07996 * 119.99755 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00135 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99773 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99975 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47293 * 60.00361 * 9 7 5 11 11 H 1.48506 * 109.47160 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47416 * 300.00209 * 9 7 5 13 13 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 14 14 N 1.46905 * 109.47028 * 64.99820 * 13 2 1 15 15 C 1.47472 * 111.00476 * 265.97517 * 14 13 2 16 16 C 1.53508 * 87.93380 * 221.29519 * 15 14 13 17 17 N 1.46499 * 114.34466 * 139.68452 * 16 15 14 18 18 S 1.65596 * 120.00523 * 121.07501 * 17 16 15 19 19 C 1.81409 * 104.44700 * 64.99745 * 18 17 16 20 20 O 1.42095 * 104.28282 * 181.07072 * 18 17 16 21 21 O 1.42099 * 104.27530 * 308.93030 * 18 17 16 22 22 C 1.47478 * 111.00174 * 169.99782 * 14 13 2 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 27 27 H 1.09000 * 109.46904 * 175.00284 * 4 2 1 28 28 H 0.97000 * 120.00259 * 179.97438 * 8 7 5 29 29 H 1.08994 * 109.47465 * 185.00197 * 13 2 1 30 30 H 1.08998 * 109.47565 * 305.00629 * 13 2 1 31 31 H 1.09001 * 113.47571 * 336.06257 * 15 14 13 32 32 H 1.09006 * 113.47827 * 106.52637 * 15 14 13 33 33 H 1.09004 * 114.17175 * 272.37586 * 16 15 14 34 34 H 0.97005 * 119.99705 * 301.07517 * 17 16 15 35 35 H 1.08995 * 109.47171 * 60.00337 * 19 18 17 36 36 H 1.09006 * 109.46786 * 180.02562 * 19 18 17 37 37 H 1.08997 * 109.46989 * 299.99826 * 19 18 17 38 38 H 1.08994 * 113.47980 * 253.47171 * 22 14 13 39 39 H 1.09004 * 113.47657 * 23.88686 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 0.0570 2.4766 6 1 1.0800 0.9741 2.3757 7 6 1.9923 -0.4022 3.7284 8 7 2.6755 -1.5193 3.8512 9 14 1.4976 0.5622 5.2497 10 1 0.0176 0.6687 5.3087 11 1 1.9927 -0.1378 6.4622 12 1 2.0897 1.9227 5.1877 13 6 2.0400 -0.7213 -1.2492 14 7 1.6514 0.0373 -2.4456 15 6 0.3813 -0.4658 -3.0011 16 6 0.9957 -0.3110 -4.3993 17 7 0.6764 -1.4020 -5.3234 18 16 -0.1061 -1.0793 -6.7467 19 6 1.0670 -0.0655 -7.6885 20 8 -0.2653 -2.3532 -7.3559 21 8 -1.2339 -0.3065 -6.3592 22 6 2.3221 -0.4916 -3.6479 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.6054 -1.7199 1.2952 27 1 3.1263 -0.7995 1.2056 28 1 2.9227 -1.8423 4.7318 29 1 3.1263 -0.7996 -1.2055 30 1 1.6054 -1.7198 -1.2952 31 1 0.1693 -1.5006 -2.7321 32 1 -0.4643 0.1985 -2.8224 33 1 0.8626 0.6778 -4.8384 34 1 0.9233 -2.3135 -5.1016 35 1 1.9868 -0.6281 -7.8483 36 1 0.6291 0.1967 -8.6516 37 1 1.2898 0.8444 -7.1312 38 1 3.1214 0.1508 -4.0173 39 1 2.6290 -1.5331 -3.5511 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602723080.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:52 Heat of formation + Delta-G solvation = -45.681050 kcal Electronic energy + Delta-G solvation = -19627.478071 eV Core-core repulsion = 16505.208369 eV Total energy + Delta-G solvation = -3122.269702 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.129 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.32787 -37.37638 -36.24142 -35.64515 -33.78195 -32.10215 -29.87210 -28.44140 -26.98438 -25.73363 -24.43348 -22.32361 -20.49370 -19.74625 -19.04834 -17.96233 -16.86497 -16.55125 -16.20678 -15.67791 -15.45893 -14.96961 -14.45892 -13.91389 -13.64582 -13.53919 -13.31462 -12.93736 -12.73809 -12.41758 -12.35157 -12.28652 -12.18307 -11.82313 -11.68659 -11.49938 -11.32317 -10.96630 -10.84725 -10.53039 -10.30921 -10.22281 -9.70516 -9.59694 -9.10734 -9.01920 -8.74683 -8.32539 -5.97608 -3.98647 -0.06879 2.35577 3.35028 3.39195 3.41963 3.46391 3.85414 4.04518 4.27873 4.36898 4.48545 4.52656 4.58309 4.90076 5.16383 5.25414 5.26969 5.38260 5.45371 5.56688 5.73071 5.82020 5.99696 6.10737 6.23645 6.29693 6.59608 6.60507 6.66762 6.91251 7.14517 7.17060 7.30185 7.68843 7.84845 8.02479 8.46698 9.07507 9.64790 11.13970 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.052315 B = 0.002981 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.092629 B = 9391.418046 C = 9511.567211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.077 4.077 3 H 0.064 0.936 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.028 3.972 14 N -0.464 5.464 15 C -0.008 4.008 16 C 0.118 3.882 17 N -1.105 6.105 18 S 2.613 3.387 19 C -0.673 4.673 20 O -0.963 6.963 21 O -0.953 6.953 22 C -0.013 4.013 23 H 0.038 0.962 24 H 0.059 0.941 25 H 0.038 0.962 26 H 0.013 0.987 27 H 0.013 0.987 28 H 0.260 0.740 29 H 0.069 0.931 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.124 0.876 34 H 0.419 0.581 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.089 0.911 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.260 1.538 -23.072 23.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.096 4.096 3 H 0.083 0.917 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.101 4.101 14 N -0.187 5.187 15 C -0.139 4.139 16 C 0.009 3.991 17 N -0.863 5.863 18 S 2.705 3.295 19 C -0.823 4.823 20 O -0.953 6.953 21 O -0.943 6.943 22 C -0.144 4.144 23 H 0.057 0.943 24 H 0.078 0.922 25 H 0.057 0.943 26 H 0.032 0.968 27 H 0.032 0.968 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.141 0.859 34 H 0.254 0.746 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.107 0.893 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.010 2.015 -23.013 23.188 hybrid contribution 0.596 -0.526 0.904 1.204 sum -1.415 1.488 -22.108 22.204 Atomic orbital electron populations 1.21778 0.96425 1.00301 1.00564 1.21130 0.95211 0.99810 0.93435 0.91741 1.19122 0.95974 0.95383 0.90504 1.21202 1.34658 1.08295 0.90972 0.92581 1.25018 0.95329 0.95091 0.99110 1.69951 1.39089 1.21247 1.23495 0.86682 0.78899 0.80123 0.82431 1.20279 1.21394 1.20270 1.22888 1.00541 0.95300 0.91328 1.68941 1.03213 1.45375 1.01125 1.24429 0.96145 1.00869 0.92455 1.22513 0.96914 0.89989 0.89641 1.55595 1.78658 1.16211 1.35844 1.04783 0.75474 0.75146 0.74134 1.30548 1.19016 1.17025 1.15732 1.93620 1.85684 1.39081 1.76911 1.93645 1.46567 1.73331 1.80717 1.24281 0.97115 1.00476 0.92516 0.94267 0.92216 0.94314 0.96824 0.96828 0.93047 0.91231 0.94035 0.90602 0.88796 0.85864 0.74624 0.85224 0.85438 0.85304 0.89286 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.38 37.16 0.31 -2.22 16 2 C -0.08 -1.56 2.55 -90.62 -0.23 -1.79 16 3 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.35 8.41 -34.44 -0.29 -14.64 16 6 H 0.06 1.53 7.05 -52.49 -0.37 1.16 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 9 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.03 0.45 4.38 -3.82 -0.02 0.43 16 14 N -0.46 -6.24 6.15 -244.67 -1.51 -7.74 16 15 C -0.01 -0.10 5.99 -7.55 -0.05 -0.14 16 16 C 0.12 1.02 4.56 -67.72 -0.31 0.71 16 17 N -1.11 -7.97 5.72 -4.66 -0.03 -7.99 16 18 S 2.61 19.75 6.05 -107.50 -0.65 19.10 16 19 C -0.67 -2.64 10.89 101.05 1.10 -1.53 16 20 O -0.96 -10.61 18.08 -57.54 -1.04 -11.65 16 21 O -0.95 -11.06 17.82 -57.54 -1.03 -12.09 16 22 C -0.01 -0.12 7.49 -7.55 -0.06 -0.18 16 23 H 0.04 0.65 5.86 -51.93 -0.30 0.34 16 24 H 0.06 1.23 6.95 -51.93 -0.36 0.87 16 25 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 30 H 0.04 0.67 7.30 -51.93 -0.38 0.29 16 31 H 0.08 0.91 7.42 -51.93 -0.39 0.52 16 32 H 0.09 1.17 7.12 -51.93 -0.37 0.80 16 33 H 0.12 0.87 7.82 -51.93 -0.41 0.46 16 34 H 0.42 2.60 8.91 -34.47 -0.31 2.30 16 35 H 0.13 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.13 0.37 8.14 -51.92 -0.42 -0.06 16 37 H 0.13 0.37 7.91 -51.93 -0.41 -0.04 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.67 7.91 -51.93 -0.41 0.26 16 LS Contribution 328.15 15.07 4.95 4.95 Total: -1.00 -35.68 328.15 -9.56 -45.24 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -6.22 Total: -3.01 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: 0.24 Total: -17.30 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: -0.80 Total: -41.96 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -2.07 Total: -23.73 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 19.75 SS G_CDS: -0.65 Total: 19.10 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.68 -9.56 -45.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602723080.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.441 kcal (2) G-P(sol) polarization free energy of solvation -35.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds