Wall clock time and date at job start Mon Mar 30 2020 20:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47145 * 2 1 4 4 C 1.52998 * 109.46879 * 240.00111 * 2 1 3 5 5 N 1.46501 * 109.47064 * 65.00274 * 4 2 1 6 6 S 1.65603 * 120.00010 * 164.60250 * 5 4 2 7 7 O 1.42094 * 106.40336 * 176.44843 * 6 5 4 8 8 O 1.42105 * 106.39665 * 309.36626 * 6 5 4 9 9 N 1.65599 * 107.22016 * 62.90408 * 6 5 4 10 10 C 1.46501 * 120.00054 * 273.30348 * 9 6 5 11 11 C 1.46501 * 119.99594 * 93.30918 * 9 6 5 12 12 C 1.50692 * 109.47356 * 95.64348 * 11 9 6 13 13 H 1.08002 * 120.00011 * 4.97457 * 12 11 9 14 14 C 1.37882 * 120.00377 * 184.97999 * 12 11 9 15 15 N 1.31506 * 120.00126 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99681 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.46878 * 90.00175 * 16 14 12 18 18 H 1.48496 * 109.47313 * 210.00408 * 16 14 12 19 19 H 1.48503 * 109.46975 * 330.00860 * 16 14 12 20 20 C 1.52998 * 109.46936 * 120.00343 * 2 1 3 21 21 C 1.52998 * 117.49699 * 248.61705 * 20 2 1 22 22 C 1.52998 * 60.00212 * 252.51364 * 21 20 2 23 23 H 1.09001 * 109.46542 * 300.00022 * 1 2 3 24 24 H 1.08990 * 109.47291 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47251 * 59.99648 * 1 2 3 26 26 H 1.08997 * 109.47148 * 184.99880 * 4 2 1 27 27 H 1.09003 * 109.47228 * 304.99852 * 4 2 1 28 28 H 0.97000 * 120.00053 * 344.59352 * 5 4 2 29 29 H 1.09005 * 109.46832 * 90.00296 * 10 9 6 30 30 H 1.09000 * 109.47029 * 209.99867 * 10 9 6 31 31 H 1.09002 * 109.47280 * 330.00145 * 10 9 6 32 32 H 1.09001 * 109.46530 * 215.63899 * 11 9 6 33 33 H 1.09001 * 109.47439 * 335.63583 * 11 9 6 34 34 H 0.97005 * 120.00058 * 179.97438 * 15 14 12 35 35 H 1.09000 * 115.55179 * 34.33014 * 20 2 1 36 36 H 1.09005 * 117.50204 * 0.02562 * 21 20 2 37 37 H 1.09008 * 117.50240 * 145.02341 * 21 20 2 38 38 H 1.08999 * 117.50061 * 252.51137 * 22 21 20 39 39 H 1.08997 * 117.49910 * 107.48886 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6524 0.0355 -2.4424 6 16 2.3769 -0.2838 -3.8969 7 8 1.7337 0.5443 -4.8559 8 8 3.7780 -0.2568 -3.6617 9 7 2.0004 -1.8453 -4.2998 10 6 2.8313 -2.9485 -3.8112 11 6 0.8365 -2.1234 -5.1450 12 6 1.2775 -2.2541 -6.5800 13 1 2.3283 -2.2215 -6.8271 14 6 0.3394 -2.4152 -7.5776 15 7 0.7243 -2.5297 -8.8299 16 14 -1.4782 -2.4721 -7.1501 17 1 -2.0386 -1.0974 -7.1871 18 1 -2.1918 -3.3243 -8.1347 19 1 -1.6488 -3.0396 -5.7885 20 6 2.0400 -0.7213 1.2492 21 6 2.7419 0.1225 2.3151 22 6 3.5550 -0.8282 1.4342 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 3.1262 -0.7995 -1.2057 27 1 1.6053 -1.7198 -1.2952 28 1 0.9714 0.7234 -2.3804 29 1 2.4467 -3.2959 -2.8522 30 1 2.8076 -3.7673 -4.5303 31 1 3.8578 -2.6032 -3.6874 32 1 0.3676 -3.0531 -4.8229 33 1 0.1206 -1.3061 -5.0578 34 1 0.0643 -2.6434 -9.5317 35 1 1.4310 -1.5586 1.5901 36 1 2.8401 1.1916 2.1265 37 1 2.5948 -0.1594 3.3577 38 1 3.9427 -1.7356 1.8972 39 1 4.1883 -0.3847 0.6659 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604399807.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:58 Heat of formation + Delta-G solvation = -58.906405 kcal Electronic energy + Delta-G solvation = -20394.394669 eV Core-core repulsion = 17271.551473 eV Total energy + Delta-G solvation = -3122.843196 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.129 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.65897 -36.63995 -35.63974 -35.27411 -35.19249 -32.37828 -31.45244 -28.38425 -26.28589 -25.14939 -23.03762 -22.43881 -21.90822 -20.20237 -18.91575 -17.34428 -16.98733 -16.60821 -16.14982 -15.70064 -15.09008 -14.71426 -14.31464 -14.18996 -13.68797 -13.24926 -13.08219 -12.73728 -12.55332 -12.34720 -11.88133 -11.80771 -11.75460 -11.65929 -11.46991 -11.39143 -11.30403 -11.20761 -10.96166 -10.64688 -10.44467 -10.41586 -10.27526 -10.12520 -9.55592 -9.33305 -8.58450 -8.11421 -6.07929 -4.07356 1.17402 3.27783 3.33417 3.35011 3.44098 3.58288 4.09525 4.38104 4.39307 4.60361 4.66000 4.84892 4.94750 5.03170 5.14660 5.23235 5.34101 5.42739 5.46331 5.55588 5.57813 5.67232 5.77813 5.83325 5.88454 5.92631 5.96240 6.09438 6.19193 6.24975 6.45804 6.73508 7.00614 7.15820 7.44635 7.58949 8.49374 8.96748 9.51478 11.05605 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.027368 B = 0.005000 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.852727 B = 5598.585628 C = 5936.643668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.068 4.068 3 H 0.078 0.922 4 C 0.125 3.875 5 N -1.136 6.136 6 S 2.783 3.217 7 O -0.964 6.964 8 O -0.993 6.993 9 N -0.990 5.990 10 C 0.093 3.907 11 C 0.229 3.771 12 C -0.535 4.535 13 H 0.078 0.922 14 C 0.074 3.926 15 N -0.895 5.895 16 Si 0.873 3.127 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.265 1.265 20 C -0.148 4.148 21 C -0.179 4.179 22 C -0.182 4.182 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.411 0.589 29 H 0.039 0.961 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.032 0.968 33 H 0.031 0.969 34 H 0.265 0.735 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.456 2.385 21.882 22.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.088 4.088 3 H 0.096 0.904 4 C -0.001 4.001 5 N -0.896 5.896 6 S 2.791 3.209 7 O -0.948 6.948 8 O -0.977 6.977 9 N -0.832 5.832 10 C -0.053 4.053 11 C 0.105 3.895 12 C -0.574 4.574 13 H 0.096 0.904 14 C -0.129 4.129 15 N -0.533 5.533 16 Si 0.700 3.300 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.190 1.190 20 C -0.166 4.166 21 C -0.216 4.216 22 C -0.219 4.219 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.244 0.756 29 H 0.058 0.942 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.125 0.875 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.073 2.798 21.163 21.374 hybrid contribution -1.526 -0.081 0.288 1.555 sum -0.453 2.717 21.452 21.628 Atomic orbital electron populations 1.21819 0.94310 1.02381 1.01825 1.20926 0.96377 0.99338 0.92140 0.90374 1.21263 1.00110 0.94717 0.84040 1.56299 1.57403 1.50509 1.25354 1.01916 0.73452 0.73266 0.72300 1.93640 1.76594 1.66635 1.57941 1.93530 1.31251 1.86811 1.86081 1.57356 1.40209 1.22881 1.62745 1.21410 0.94031 0.91380 0.98510 1.19414 0.82902 0.96622 0.90554 1.21395 0.96075 1.50651 0.89239 0.90405 1.24876 0.98855 0.94401 0.94795 1.69895 1.34330 1.49456 0.99618 0.86902 0.85734 0.78718 0.78650 1.19743 1.20977 1.19013 1.22298 0.95113 1.01998 0.97238 1.23000 1.04793 0.97649 0.96155 1.23012 0.93839 1.01797 1.03205 0.92449 0.92227 0.92235 0.90546 0.91760 0.75582 0.94226 0.90157 0.91318 0.95041 0.95125 0.92511 0.87539 0.88839 0.88975 0.88691 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.05 37.16 0.34 -0.91 16 2 C -0.07 -0.63 2.65 -90.62 -0.24 -0.87 16 3 H 0.08 0.72 7.90 -51.93 -0.41 0.31 16 4 C 0.13 1.44 5.56 -4.04 -0.02 1.42 16 5 N -1.14 -15.81 5.93 -10.61 -0.06 -15.87 16 6 S 2.78 53.98 6.09 -107.50 -0.65 53.32 16 7 O -0.96 -22.74 16.98 -57.17 -0.97 -23.71 16 8 O -0.99 -20.62 16.34 -57.17 -0.93 -21.55 16 9 N -0.99 -19.89 3.23 -123.05 -0.40 -20.29 16 10 C 0.09 1.54 10.69 59.85 0.64 2.18 16 11 C 0.23 5.38 4.17 -5.20 -0.02 5.36 16 12 C -0.53 -15.33 9.93 -34.44 -0.34 -15.67 16 13 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 14 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 15 N -0.89 -27.66 13.96 55.43 0.77 -26.89 16 16 Si 0.87 21.22 27.37 -169.99 -4.65 16.57 16 17 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.27 -5.97 6.69 56.52 0.38 -5.59 16 20 C -0.15 -1.20 5.15 -90.62 -0.47 -1.66 16 21 C -0.18 -1.33 10.18 -26.73 -0.27 -1.60 16 22 C -0.18 -1.47 9.67 -26.73 -0.26 -1.73 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.53 6.89 -51.93 -0.36 0.17 16 26 H 0.08 0.90 6.78 -51.93 -0.35 0.55 16 27 H 0.06 0.70 8.03 -51.93 -0.42 0.28 16 28 H 0.41 4.98 7.40 -34.47 -0.26 4.72 16 29 H 0.04 0.51 8.03 -51.93 -0.42 0.10 16 30 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 31 H 0.07 1.09 7.05 -51.93 -0.37 0.73 16 32 H 0.03 0.70 7.52 -51.93 -0.39 0.31 16 33 H 0.03 0.73 6.65 -51.93 -0.35 0.38 16 34 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 35 H 0.11 0.80 8.11 -51.93 -0.42 0.38 16 36 H 0.09 0.68 8.05 -51.93 -0.42 0.27 16 37 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.10 0.87 7.58 -51.93 -0.39 0.47 16 LS Contribution 330.31 15.07 4.98 4.98 Total: -1.00 -34.70 330.31 -8.90 -43.60 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -6.23 Total: 1.28 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -0.74 Total: -11.44 kcal Atomic # 7 Polarization: -63.37 SS G_CDS: 0.31 Total: -63.05 kcal Atomic # 8 Polarization: -43.36 SS G_CDS: -1.91 Total: -45.26 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.65 Total: 16.57 kcal Atomic # 16 Polarization: 53.98 SS G_CDS: -0.65 Total: 53.32 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.70 -8.90 -43.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604399807.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.305 kcal (2) G-P(sol) polarization free energy of solvation -34.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds