Wall clock time and date at job start Mon Mar 30 2020 20:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47145 * 2 1 4 4 C 1.52998 * 109.46879 * 240.00111 * 2 1 3 5 5 N 1.46501 * 109.47064 * 65.00274 * 4 2 1 6 6 S 1.65603 * 120.00010 * 164.60250 * 5 4 2 7 7 O 1.42094 * 106.40336 * 176.44843 * 6 5 4 8 8 O 1.42105 * 106.39665 * 309.36626 * 6 5 4 9 9 N 1.65599 * 107.22016 * 62.90408 * 6 5 4 10 10 C 1.46501 * 120.00054 * 273.30348 * 9 6 5 11 11 C 1.46501 * 119.99594 * 93.30918 * 9 6 5 12 12 C 1.50692 * 109.47356 * 95.64348 * 11 9 6 13 13 H 1.08002 * 120.00011 * 4.97457 * 12 11 9 14 14 C 1.37882 * 120.00377 * 184.97999 * 12 11 9 15 15 N 1.31506 * 120.00126 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99681 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.46878 * 90.00175 * 16 14 12 18 18 H 1.48496 * 109.47313 * 210.00408 * 16 14 12 19 19 H 1.48503 * 109.46975 * 330.00860 * 16 14 12 20 20 C 1.52998 * 109.46936 * 120.00343 * 2 1 3 21 21 C 1.52998 * 117.49699 * 248.61705 * 20 2 1 22 22 C 1.52998 * 60.00212 * 252.51364 * 21 20 2 23 23 H 1.09001 * 109.46542 * 300.00022 * 1 2 3 24 24 H 1.08990 * 109.47291 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47251 * 59.99648 * 1 2 3 26 26 H 1.08997 * 109.47148 * 184.99880 * 4 2 1 27 27 H 1.09003 * 109.47228 * 304.99852 * 4 2 1 28 28 H 0.97000 * 120.00053 * 344.59352 * 5 4 2 29 29 H 1.09005 * 109.46832 * 90.00296 * 10 9 6 30 30 H 1.09000 * 109.47029 * 209.99867 * 10 9 6 31 31 H 1.09002 * 109.47280 * 330.00145 * 10 9 6 32 32 H 1.09001 * 109.46530 * 215.63899 * 11 9 6 33 33 H 1.09001 * 109.47439 * 335.63583 * 11 9 6 34 34 H 0.97005 * 120.00058 * 179.97438 * 15 14 12 35 35 H 1.09000 * 115.55179 * 34.33014 * 20 2 1 36 36 H 1.09005 * 117.50204 * 0.02562 * 21 20 2 37 37 H 1.09008 * 117.50240 * 145.02341 * 21 20 2 38 38 H 1.08999 * 117.50061 * 252.51137 * 22 21 20 39 39 H 1.08997 * 117.49910 * 107.48886 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6524 0.0355 -2.4424 6 16 2.3769 -0.2838 -3.8969 7 8 1.7337 0.5443 -4.8559 8 8 3.7780 -0.2568 -3.6617 9 7 2.0004 -1.8453 -4.2998 10 6 2.8313 -2.9485 -3.8112 11 6 0.8365 -2.1234 -5.1450 12 6 1.2775 -2.2541 -6.5800 13 1 2.3283 -2.2215 -6.8271 14 6 0.3394 -2.4152 -7.5776 15 7 0.7243 -2.5297 -8.8299 16 14 -1.4782 -2.4721 -7.1501 17 1 -2.0386 -1.0974 -7.1871 18 1 -2.1918 -3.3243 -8.1347 19 1 -1.6488 -3.0396 -5.7885 20 6 2.0400 -0.7213 1.2492 21 6 2.7419 0.1225 2.3151 22 6 3.5550 -0.8282 1.4342 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 3.1262 -0.7995 -1.2057 27 1 1.6053 -1.7198 -1.2952 28 1 0.9714 0.7234 -2.3804 29 1 2.4467 -3.2959 -2.8522 30 1 2.8076 -3.7673 -4.5303 31 1 3.8578 -2.6032 -3.6874 32 1 0.3676 -3.0531 -4.8229 33 1 0.1206 -1.3061 -5.0578 34 1 0.0643 -2.6434 -9.5317 35 1 1.4310 -1.5586 1.5901 36 1 2.8401 1.1916 2.1265 37 1 2.5948 -0.1594 3.3577 38 1 3.9427 -1.7356 1.8972 39 1 4.1883 -0.3847 0.6659 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604399807.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:58 Heat of formation + Delta-G solvation = -85.027412 kcal Electronic energy + Delta-G solvation = -20395.527361 eV Core-core repulsion = 17271.551473 eV Total energy + Delta-G solvation = -3123.975888 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.129 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.36937 -38.29259 -37.29248 -36.86963 -36.21095 -34.50565 -32.30788 -30.26950 -27.16901 -26.74582 -23.83215 -23.75065 -23.03695 -20.99357 -20.27476 -19.16190 -18.70874 -18.20750 -17.49072 -16.63552 -16.36042 -16.01642 -15.57786 -15.35568 -15.04034 -14.59732 -14.49641 -14.11054 -13.99630 -13.47514 -13.41703 -13.18947 -13.10911 -13.04552 -12.98191 -12.55582 -12.35334 -12.31114 -12.21971 -12.13903 -12.01630 -11.70902 -11.67391 -11.02860 -10.80936 -10.77992 -10.44423 -9.76553 -8.29192 -6.35234 -0.35372 1.37093 1.41792 1.49883 2.03457 2.36086 2.63865 2.93392 3.05404 3.43465 3.74861 3.89796 4.00356 4.06026 4.19871 4.26178 4.44202 4.57442 4.64575 4.68817 4.74877 4.80994 4.87444 4.90344 4.94735 5.05764 5.08068 5.17460 5.27815 5.31941 5.34022 5.37063 5.48625 5.53666 5.73006 6.13150 6.31364 6.68098 7.28278 8.88389 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.027368 B = 0.005000 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.852727 B = 5598.585628 C = 5936.643668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.063 4.063 3 H 0.076 0.924 4 C 0.116 3.884 5 N -1.116 6.116 6 S 2.797 3.203 7 O -1.012 7.012 8 O -1.013 7.013 9 N -0.998 5.998 10 C 0.086 3.914 11 C 0.236 3.764 12 C -0.548 4.548 13 H 0.028 0.972 14 C 0.006 3.994 15 N -0.949 5.949 16 Si 0.945 3.055 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.227 1.227 20 C -0.148 4.148 21 C -0.174 4.174 22 C -0.190 4.190 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.421 0.579 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.036 0.964 34 H 0.268 0.732 35 H 0.117 0.883 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.408 1.866 25.012 25.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.083 4.083 3 H 0.094 0.906 4 C -0.009 4.009 5 N -0.881 5.881 6 S 2.805 3.195 7 O -0.996 6.996 8 O -0.996 6.996 9 N -0.839 5.839 10 C -0.059 4.059 11 C 0.111 3.889 12 C -0.587 4.587 13 H 0.046 0.954 14 C -0.191 4.191 15 N -0.589 5.589 16 Si 0.766 3.234 17 H -0.196 1.196 18 H -0.204 1.204 19 H -0.150 1.150 20 C -0.167 4.167 21 C -0.211 4.211 22 C -0.227 4.227 23 H 0.087 0.913 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.258 0.742 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.135 0.865 36 H 0.111 0.889 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.764 2.271 24.324 24.441 hybrid contribution -0.792 0.103 -0.639 1.023 sum -1.556 2.375 23.684 23.854 Atomic orbital electron populations 1.21832 0.93554 1.02765 1.02199 1.20884 0.96943 0.99060 0.91402 0.90589 1.21568 1.00251 0.95435 0.83680 1.55774 1.57316 1.50846 1.24158 1.01205 0.72949 0.72620 0.72686 1.93569 1.77321 1.68054 1.60695 1.93501 1.32643 1.86917 1.86504 1.57277 1.39857 1.23927 1.62887 1.21646 0.94069 0.90068 1.00152 1.19201 0.84036 0.97780 0.87912 1.21752 0.94006 1.50315 0.92597 0.95352 1.25961 1.04936 0.93826 0.94407 1.70072 1.36435 1.51225 1.01154 0.85772 0.78164 0.79007 0.80437 1.19587 1.20402 1.14959 1.22297 0.95069 1.02442 0.96894 1.23068 1.03818 0.97520 0.96646 1.23047 0.93806 1.02475 1.03402 0.91306 0.91824 0.92697 0.90935 0.90320 0.74209 0.89738 0.91315 0.91175 0.92514 0.94640 0.92337 0.86474 0.88916 0.87714 0.87803 0.89500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.05 71.98 0.65 -1.39 16 2 C -0.06 -0.98 2.65 -10.79 -0.03 -1.01 16 3 H 0.08 1.23 7.90 -2.38 -0.02 1.21 16 4 C 0.12 2.37 5.56 86.38 0.48 2.85 16 5 N -1.12 -28.98 5.93 -187.49 -1.11 -30.10 16 6 S 2.80 107.23 6.09 -56.49 -0.34 106.88 16 7 O -1.01 -48.27 16.98 -128.00 -2.17 -50.45 16 8 O -1.01 -41.94 16.34 -128.00 -2.09 -44.03 16 9 N -1.00 -39.09 3.23 -543.22 -1.75 -40.85 16 10 C 0.09 2.70 10.69 127.77 1.37 4.07 16 11 C 0.24 10.76 4.17 85.63 0.36 11.12 16 12 C -0.55 -32.04 9.93 25.60 0.25 -31.79 16 13 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 14 C 0.01 0.38 5.47 84.66 0.46 0.84 16 15 N -0.95 -60.50 13.96 21.45 0.30 -60.21 16 16 Si 0.94 42.93 27.37 68.60 1.88 44.81 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 18 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 19 H -0.23 -8.86 6.69 99.48 0.67 -8.20 16 20 C -0.15 -1.97 5.15 -10.79 -0.06 -2.02 16 21 C -0.17 -2.13 10.18 30.59 0.31 -1.81 16 22 C -0.19 -2.66 9.67 30.59 0.30 -2.37 16 23 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.05 0.81 6.89 -2.39 -0.02 0.80 16 26 H 0.07 1.56 6.78 -2.39 -0.02 1.55 16 27 H 0.08 1.41 8.03 -2.39 -0.02 1.39 16 28 H 0.42 9.40 7.40 -96.74 -0.72 8.68 16 29 H 0.08 1.90 8.03 -2.38 -0.02 1.88 16 30 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 31 H 0.07 2.17 7.05 -2.39 -0.02 2.15 16 32 H 0.06 2.33 7.52 -2.39 -0.02 2.31 16 33 H 0.04 1.60 6.65 -2.39 -0.02 1.59 16 34 H 0.27 15.82 8.31 -92.70 -0.77 15.05 16 35 H 0.12 1.34 8.11 -2.39 -0.02 1.32 16 36 H 0.09 1.15 8.05 -2.38 -0.02 1.13 16 37 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.09 1.42 7.58 -2.39 -0.02 1.40 16 Total: -1.00 -77.35 330.31 -0.93 -78.28 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.28 Total: 17.18 kcal Atomic # 6 Polarization: -25.61 SS G_CDS: 4.09 Total: -21.52 kcal Atomic # 7 Polarization: -128.58 SS G_CDS: -2.57 Total: -131.15 kcal Atomic # 8 Polarization: -90.22 SS G_CDS: -4.27 Total: -94.48 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 1.88 Total: 44.81 kcal Atomic # 16 Polarization: 107.23 SS G_CDS: -0.34 Total: 106.88 kcal Total: -77.35 -0.93 -78.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604399807.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.750 kcal (2) G-P(sol) polarization free energy of solvation -77.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds