Wall clock time and date at job start Mon Mar 30 2020 20:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47189 * 2 1 4 4 C 1.50701 * 109.47183 * 240.00125 * 2 1 3 5 5 H 1.07999 * 119.99474 * 267.33291 * 4 2 1 6 6 C 1.37865 * 120.00042 * 87.33092 * 4 2 1 7 7 N 1.31518 * 120.00033 * 353.64230 * 6 4 2 8 8 Si 1.86804 * 120.00055 * 173.64228 * 6 4 2 9 9 H 1.48498 * 109.47111 * 90.00101 * 8 6 4 10 10 H 1.48507 * 109.46935 * 210.00145 * 8 6 4 11 11 H 1.48503 * 109.46911 * 329.99885 * 8 6 4 12 12 N 1.46498 * 109.46794 * 120.00181 * 2 1 3 13 13 C 1.46497 * 120.00370 * 60.00068 * 12 2 1 14 14 S 1.65603 * 119.99848 * 239.99988 * 12 2 1 15 15 O 1.42106 * 106.40226 * 203.54135 * 14 12 2 16 16 O 1.42104 * 106.40273 * 336.45804 * 14 12 2 17 17 N 1.65594 * 107.22133 * 90.00160 * 14 12 2 18 18 C 1.47069 * 136.05858 * 269.63301 * 17 14 12 19 19 C 1.53236 * 88.08409 * 207.19810 * 18 17 14 20 20 C 1.52996 * 114.32633 * 220.46502 * 19 18 17 21 21 C 1.53000 * 114.19560 * 87.72742 * 19 18 17 22 22 C 1.47071 * 136.06110 * 89.99368 * 17 14 12 23 23 H 1.08997 * 109.47270 * 54.35749 * 1 2 3 24 24 H 1.08999 * 109.47029 * 174.35563 * 1 2 3 25 25 H 1.09005 * 109.47492 * 294.35451 * 1 2 3 26 26 H 0.96998 * 119.99971 * 1.89442 * 7 6 4 27 27 H 1.08996 * 109.47375 * 89.99630 * 13 12 2 28 28 H 1.08996 * 109.47310 * 209.99886 * 13 12 2 29 29 H 1.08996 * 109.47162 * 329.99945 * 13 12 2 30 30 H 1.09005 * 113.46519 * 321.93787 * 18 17 14 31 31 H 1.09006 * 113.47059 * 92.36907 * 18 17 14 32 32 H 1.08997 * 109.46908 * 153.76125 * 20 19 18 33 33 H 1.09001 * 109.47430 * 273.76278 * 20 19 18 34 34 H 1.09002 * 109.47173 * 33.76460 * 20 19 18 35 35 H 1.08999 * 109.47303 * 326.30426 * 21 19 18 36 36 H 1.08997 * 109.47332 * 86.30165 * 21 19 18 37 37 H 1.09001 * 109.47258 * 206.30180 * 21 19 18 38 38 H 1.08997 * 113.46939 * 267.63452 * 22 17 14 39 39 H 1.09006 * 113.45881 * 38.06937 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.2534 -1.7668 -1.1916 6 6 2.2097 -0.0117 -2.4057 7 7 1.8239 1.2428 -2.4895 8 14 2.9980 -0.8469 -3.8790 9 1 1.9446 -1.4857 -4.7081 10 1 3.7228 0.1631 -4.6913 11 1 3.9534 -1.8820 -3.4086 12 7 2.0182 -0.6906 1.1962 13 6 1.6643 -2.0932 1.4280 14 16 2.9703 0.1141 2.2863 15 8 3.7117 -0.8790 2.9815 16 8 3.5794 1.1829 1.5749 17 7 1.9607 0.8090 3.3998 18 6 1.2661 2.0976 3.5408 19 6 1.3148 1.8993 5.0595 20 6 0.0374 2.3166 5.7908 21 6 2.5898 2.4271 5.7203 22 6 1.3689 0.4114 4.6862 23 1 -0.3634 0.5988 -0.8351 24 1 -0.3633 -1.0227 -0.1011 25 1 -0.3634 0.4238 0.9362 26 1 1.4397 1.6848 -1.7163 27 1 2.4156 -2.7377 0.9717 28 1 1.6237 -2.2852 2.5001 29 1 0.6904 -2.3002 0.9846 30 1 1.8548 2.9479 3.1963 31 1 0.2546 2.0924 3.1345 32 1 -0.0515 1.7509 6.7183 33 1 0.0800 3.3819 6.0176 34 1 -0.8264 2.1142 5.1576 35 1 3.4317 2.2987 5.0399 36 1 2.4679 3.4853 5.9516 37 1 2.7784 1.8735 6.6401 38 1 0.3852 -0.0476 4.5882 39 1 2.0450 -0.1693 5.3139 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619751639.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:10:10 Heat of formation + Delta-G solvation = -47.828157 kcal Electronic energy + Delta-G solvation = -21132.556849 eV Core-core repulsion = 18010.194042 eV Total energy + Delta-G solvation = -3122.362807 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.129 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.93212 -36.66022 -36.30644 -35.20884 -32.68697 -32.07795 -29.17452 -27.58226 -26.04074 -25.70097 -25.39509 -24.70272 -20.89888 -18.89429 -18.31757 -17.48629 -16.85930 -16.70352 -15.62906 -15.36143 -14.58603 -14.18012 -13.89196 -13.68704 -13.47386 -13.30033 -13.02804 -12.46805 -12.43342 -12.15954 -11.97670 -11.91867 -11.77383 -11.49704 -11.44508 -11.34631 -11.32538 -11.10298 -10.75872 -10.70350 -10.56245 -10.22979 -10.16129 -10.09098 -8.99815 -8.95107 -8.46234 -7.85901 -6.43857 -4.14847 1.10291 3.38463 3.42537 3.48114 3.62680 4.09127 4.13854 4.49722 4.67999 4.71950 4.76623 5.06294 5.29643 5.44353 5.46149 5.53795 5.55695 5.62883 5.64245 5.75466 5.86137 5.87799 5.94746 6.01982 6.07020 6.25528 6.28428 6.41766 6.42708 6.56343 6.66288 6.73415 7.05286 7.33711 7.63891 8.06662 8.40440 8.77511 9.55574 10.94569 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.029164 B = 0.005777 C = 0.005587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.843682 B = 4845.706828 C = 5010.832607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.249 3.751 3 H 0.059 0.941 4 C -0.597 4.597 5 H 0.057 0.943 6 C 0.024 3.976 7 N -0.901 5.901 8 Si 1.072 2.928 9 H -0.287 1.287 10 H -0.282 1.282 11 H -0.288 1.288 12 N -0.987 5.987 13 C 0.111 3.889 14 S 2.791 3.209 15 O -0.990 6.990 16 O -0.967 6.967 17 N -1.048 6.048 18 C 0.133 3.867 19 C -0.104 4.104 20 C -0.133 4.133 21 C -0.125 4.125 22 C 0.132 3.868 23 H 0.056 0.944 24 H 0.045 0.955 25 H 0.019 0.981 26 H 0.270 0.730 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.026 0.492 15.620 16.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.146 3.854 3 H 0.077 0.923 4 C -0.638 4.638 5 H 0.076 0.924 6 C -0.182 4.182 7 N -0.537 5.537 8 Si 0.900 3.100 9 H -0.214 1.214 10 H -0.208 1.208 11 H -0.214 1.214 12 N -0.829 5.829 13 C -0.035 4.035 14 S 2.803 3.197 15 O -0.975 6.975 16 O -0.952 6.952 17 N -0.886 5.886 18 C 0.007 3.993 19 C -0.106 4.106 20 C -0.191 4.191 21 C -0.182 4.182 22 C 0.006 3.994 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.038 0.962 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.448 0.671 13.857 14.295 hybrid contribution -0.930 -0.459 1.417 1.756 sum -4.378 0.211 15.273 15.890 Atomic orbital electron populations 1.22188 0.99089 1.00539 0.98525 1.18869 0.90452 0.93581 0.82474 0.92338 1.22115 1.48657 0.97349 0.95632 0.92449 1.25868 0.95106 0.95946 1.01307 1.70786 1.38116 1.11823 1.32977 0.83512 0.76420 0.75162 0.74940 1.21397 1.20787 1.21365 1.58006 1.70091 1.19627 1.35167 1.21101 1.01340 0.82379 0.98717 1.01742 0.73533 0.72813 0.71597 1.93524 1.68901 1.60127 1.74916 1.93597 1.73605 1.56264 1.71687 1.60925 1.64418 1.27866 1.35373 1.22531 0.97025 0.85953 0.93773 1.22270 0.96819 0.96351 0.95203 1.21671 0.95713 1.01536 1.00204 1.21511 0.95680 1.00749 1.00282 1.22540 0.97948 0.95994 0.82926 0.92537 0.93597 0.96179 0.91822 0.93205 0.93403 0.91383 0.90383 0.90140 0.92141 0.92117 0.92115 0.92251 0.91974 0.92062 0.90324 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.98 37.16 0.33 -2.76 16 2 C 0.25 6.16 2.26 -69.08 -0.16 6.01 16 3 H 0.06 1.60 5.67 -51.93 -0.29 1.31 16 4 C -0.60 -16.50 8.28 -34.44 -0.29 -16.78 16 5 H 0.06 1.57 7.36 -52.49 -0.39 1.19 16 6 C 0.02 0.67 5.45 -17.82 -0.10 0.58 16 7 N -0.90 -26.88 13.62 55.43 0.75 -26.12 16 8 Si 1.07 25.33 29.91 -169.99 -5.08 20.24 16 9 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.99 -21.45 3.12 -115.86 -0.36 -21.81 16 13 C 0.11 2.07 9.37 59.85 0.56 2.63 16 14 S 2.79 58.98 6.64 -107.50 -0.71 58.27 16 15 O -0.99 -22.08 17.21 -57.17 -0.98 -23.07 16 16 O -0.97 -24.21 16.70 -57.17 -0.95 -25.16 16 17 N -1.05 -16.82 4.11 -125.29 -0.51 -17.33 16 18 C 0.13 1.77 7.82 -8.65 -0.07 1.70 16 19 C -0.10 -1.09 1.53 -154.13 -0.24 -1.32 16 20 C -0.13 -1.03 9.30 37.16 0.35 -0.68 16 21 C -0.13 -1.28 9.22 37.16 0.34 -0.93 16 22 C 0.13 1.59 7.90 -8.51 -0.07 1.53 16 23 H 0.06 1.29 7.75 -51.93 -0.40 0.88 16 24 H 0.04 0.94 6.91 -51.93 -0.36 0.58 16 25 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.27 7.98 6.35 -40.82 -0.26 7.72 16 27 H 0.05 0.95 8.10 -51.93 -0.42 0.53 16 28 H 0.05 0.76 7.79 -51.93 -0.40 0.35 16 29 H 0.07 1.19 6.54 -51.93 -0.34 0.85 16 30 H 0.08 1.07 8.11 -51.93 -0.42 0.65 16 31 H 0.08 0.97 7.94 -51.93 -0.41 0.56 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 34 H 0.06 0.45 7.90 -51.93 -0.41 0.04 16 35 H 0.06 0.73 7.93 -51.93 -0.41 0.32 16 36 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 39 H 0.08 0.89 8.12 -51.93 -0.42 0.47 16 LS Contribution 327.99 15.07 4.94 4.94 Total: -1.00 -34.05 327.99 -8.51 -42.56 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -6.27 Total: -2.47 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: 0.67 Total: -10.05 kcal Atomic # 7 Polarization: -65.15 SS G_CDS: -0.12 Total: -65.27 kcal Atomic # 8 Polarization: -46.29 SS G_CDS: -1.94 Total: -48.23 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.08 Total: 20.24 kcal Atomic # 16 Polarization: 58.98 SS G_CDS: -0.71 Total: 58.27 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.05 -8.51 -42.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619751639.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.270 kcal (2) G-P(sol) polarization free energy of solvation -34.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds