Wall clock time and date at job start Mon Mar 30 2020 20:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47189 * 2 1 4 4 C 1.50701 * 109.47183 * 240.00125 * 2 1 3 5 5 H 1.07999 * 119.99474 * 267.33291 * 4 2 1 6 6 C 1.37865 * 120.00042 * 87.33092 * 4 2 1 7 7 N 1.31518 * 120.00033 * 353.64230 * 6 4 2 8 8 Si 1.86804 * 120.00055 * 173.64228 * 6 4 2 9 9 H 1.48498 * 109.47111 * 90.00101 * 8 6 4 10 10 H 1.48507 * 109.46935 * 210.00145 * 8 6 4 11 11 H 1.48503 * 109.46911 * 329.99885 * 8 6 4 12 12 N 1.46498 * 109.46794 * 120.00181 * 2 1 3 13 13 C 1.46497 * 120.00370 * 60.00068 * 12 2 1 14 14 S 1.65603 * 119.99848 * 239.99988 * 12 2 1 15 15 O 1.42106 * 106.40226 * 203.54135 * 14 12 2 16 16 O 1.42104 * 106.40273 * 336.45804 * 14 12 2 17 17 N 1.65594 * 107.22133 * 90.00160 * 14 12 2 18 18 C 1.47069 * 136.05858 * 269.63301 * 17 14 12 19 19 C 1.53236 * 88.08409 * 207.19810 * 18 17 14 20 20 C 1.52996 * 114.32633 * 220.46502 * 19 18 17 21 21 C 1.53000 * 114.19560 * 87.72742 * 19 18 17 22 22 C 1.47071 * 136.06110 * 89.99368 * 17 14 12 23 23 H 1.08997 * 109.47270 * 54.35749 * 1 2 3 24 24 H 1.08999 * 109.47029 * 174.35563 * 1 2 3 25 25 H 1.09005 * 109.47492 * 294.35451 * 1 2 3 26 26 H 0.96998 * 119.99971 * 1.89442 * 7 6 4 27 27 H 1.08996 * 109.47375 * 89.99630 * 13 12 2 28 28 H 1.08996 * 109.47310 * 209.99886 * 13 12 2 29 29 H 1.08996 * 109.47162 * 329.99945 * 13 12 2 30 30 H 1.09005 * 113.46519 * 321.93787 * 18 17 14 31 31 H 1.09006 * 113.47059 * 92.36907 * 18 17 14 32 32 H 1.08997 * 109.46908 * 153.76125 * 20 19 18 33 33 H 1.09001 * 109.47430 * 273.76278 * 20 19 18 34 34 H 1.09002 * 109.47173 * 33.76460 * 20 19 18 35 35 H 1.08999 * 109.47303 * 326.30426 * 21 19 18 36 36 H 1.08997 * 109.47332 * 86.30165 * 21 19 18 37 37 H 1.09001 * 109.47258 * 206.30180 * 21 19 18 38 38 H 1.08997 * 113.46939 * 267.63452 * 22 17 14 39 39 H 1.09006 * 113.45881 * 38.06937 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.2534 -1.7668 -1.1916 6 6 2.2097 -0.0117 -2.4057 7 7 1.8239 1.2428 -2.4895 8 14 2.9980 -0.8469 -3.8790 9 1 1.9446 -1.4857 -4.7081 10 1 3.7228 0.1631 -4.6913 11 1 3.9534 -1.8820 -3.4086 12 7 2.0182 -0.6906 1.1962 13 6 1.6643 -2.0932 1.4280 14 16 2.9703 0.1141 2.2863 15 8 3.7117 -0.8790 2.9815 16 8 3.5794 1.1829 1.5749 17 7 1.9607 0.8090 3.3998 18 6 1.2661 2.0976 3.5408 19 6 1.3148 1.8993 5.0595 20 6 0.0374 2.3166 5.7908 21 6 2.5898 2.4271 5.7203 22 6 1.3689 0.4114 4.6862 23 1 -0.3634 0.5988 -0.8351 24 1 -0.3633 -1.0227 -0.1011 25 1 -0.3634 0.4238 0.9362 26 1 1.4397 1.6848 -1.7163 27 1 2.4156 -2.7377 0.9717 28 1 1.6237 -2.2852 2.5001 29 1 0.6904 -2.3002 0.9846 30 1 1.8548 2.9479 3.1963 31 1 0.2546 2.0924 3.1345 32 1 -0.0515 1.7509 6.7183 33 1 0.0800 3.3819 6.0176 34 1 -0.8264 2.1142 5.1576 35 1 3.4317 2.2987 5.0399 36 1 2.4679 3.4853 5.9516 37 1 2.7784 1.8735 6.6401 38 1 0.3852 -0.0476 4.5882 39 1 2.0450 -0.1693 5.3139 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619751639.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:10:09 Heat of formation + Delta-G solvation = -72.721720 kcal Electronic energy + Delta-G solvation = -21133.636315 eV Core-core repulsion = 18010.194042 eV Total energy + Delta-G solvation = -3123.442273 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.129 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.94609 -38.45505 -38.11016 -37.00115 -34.69170 -33.03692 -31.00532 -28.30626 -27.32273 -27.04559 -26.86597 -26.40790 -22.78479 -20.21010 -19.55999 -19.09132 -18.66293 -18.37243 -17.21103 -16.39164 -15.95614 -15.64105 -15.51509 -15.26845 -14.99783 -14.78658 -14.26874 -13.75285 -13.72537 -13.61315 -13.34710 -13.29376 -13.18269 -13.15455 -13.03045 -12.88124 -12.65045 -12.58208 -12.38691 -12.10821 -12.07039 -11.96110 -11.62563 -11.12875 -10.91037 -10.59074 -10.15914 -9.65981 -8.64917 -6.36719 -0.51006 1.50490 1.60312 1.76940 1.90554 2.48761 2.55646 3.05827 3.18394 3.34789 3.69851 3.88444 4.01461 4.28260 4.42451 4.51750 4.52852 4.56384 4.63392 4.72121 4.74902 4.83184 4.84193 4.87712 4.91278 4.95399 5.00895 5.10708 5.16355 5.28057 5.29887 5.45609 5.50823 5.66610 5.84351 6.02506 6.23870 6.57238 7.41553 8.73618 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.029164 B = 0.005777 C = 0.005587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.843682 B = 4845.706828 C = 5010.832607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.251 3.749 3 H 0.025 0.975 4 C -0.610 4.610 5 H 0.054 0.946 6 C -0.028 4.028 7 N -0.930 5.930 8 Si 1.112 2.888 9 H -0.265 1.265 10 H -0.286 1.286 11 H -0.278 1.278 12 N -0.997 5.997 13 C 0.106 3.894 14 S 2.805 3.195 15 O -1.007 7.007 16 O -1.018 7.018 17 N -1.052 6.052 18 C 0.121 3.879 19 C -0.084 4.084 20 C -0.126 4.126 21 C -0.130 4.130 22 C 0.126 3.874 23 H 0.037 0.963 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.260 0.740 27 H 0.037 0.963 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.028 0.972 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.105 0.895 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.645 -0.267 17.577 18.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.147 3.853 3 H 0.043 0.957 4 C -0.650 4.650 5 H 0.072 0.928 6 C -0.227 4.227 7 N -0.567 5.567 8 Si 0.934 3.066 9 H -0.190 1.190 10 H -0.211 1.211 11 H -0.203 1.203 12 N -0.838 5.838 13 C -0.040 4.040 14 S 2.819 3.181 15 O -0.992 6.992 16 O -1.002 7.002 17 N -0.894 5.894 18 C -0.005 4.005 19 C -0.087 4.087 20 C -0.184 4.184 21 C -0.187 4.187 22 C 0.002 3.998 23 H 0.056 0.944 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.048 0.952 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.123 0.877 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.076 -0.122 15.819 16.614 hybrid contribution -0.436 -0.206 0.991 1.102 sum -5.512 -0.328 16.810 17.694 Atomic orbital electron populations 1.21962 0.96480 1.01089 0.99358 1.18635 0.92270 0.91727 0.82686 0.95750 1.22479 1.48158 0.97387 0.96950 0.92770 1.27183 0.95224 0.95972 1.04368 1.70888 1.40237 1.12861 1.32730 0.83002 0.76419 0.74599 0.72573 1.19006 1.21136 1.20297 1.57837 1.70035 1.21012 1.34906 1.21297 1.01539 0.80410 1.00749 1.00872 0.73765 0.71934 0.71572 1.93487 1.69962 1.60700 1.75015 1.93527 1.75486 1.57818 1.73385 1.60542 1.64461 1.29061 1.35367 1.22916 0.97119 0.84088 0.96337 1.22215 0.98470 0.94849 0.93204 1.21653 0.93779 1.02452 1.00550 1.21583 0.94542 1.02306 1.00248 1.22976 0.98891 0.97479 0.80478 0.94416 0.92516 0.93105 0.92992 0.94374 0.90411 0.90088 0.91833 0.88484 0.90386 0.91086 0.91447 0.95241 0.90266 0.90342 0.87702 0.90243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.47 8.98 71.98 0.65 -4.82 16 2 C 0.25 12.57 2.26 44.25 0.10 12.67 16 3 H 0.02 1.40 5.67 -2.39 -0.01 1.39 16 4 C -0.61 -34.13 8.28 25.60 0.21 -33.92 16 5 H 0.05 2.99 7.36 -2.91 -0.02 2.97 16 6 C -0.03 -1.60 5.45 84.65 0.46 -1.14 16 7 N -0.93 -56.99 13.62 21.44 0.29 -56.69 16 8 Si 1.11 51.25 29.91 68.60 2.05 53.31 16 9 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 10 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 11 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 12 N -1.00 -43.08 3.12 -520.48 -1.62 -44.71 16 13 C 0.11 3.78 9.37 127.77 1.20 4.97 16 14 S 2.81 119.62 6.64 -56.49 -0.37 119.25 16 15 O -1.01 -44.83 17.21 -128.00 -2.20 -47.04 16 16 O -1.02 -53.13 16.70 -128.00 -2.14 -55.27 16 17 N -1.05 -32.61 4.11 -550.31 -2.26 -34.87 16 18 C 0.12 3.03 7.82 83.09 0.65 3.68 16 19 C -0.08 -1.53 1.53 -51.94 -0.08 -1.61 16 20 C -0.13 -1.41 9.30 71.98 0.67 -0.74 16 21 C -0.13 -2.38 9.22 71.98 0.66 -1.72 16 22 C 0.13 2.67 7.90 83.17 0.66 3.33 16 23 H 0.04 1.71 7.75 -2.39 -0.02 1.69 16 24 H 0.06 2.24 6.91 -2.39 -0.02 2.22 16 25 H 0.05 1.79 8.14 -2.38 -0.02 1.78 16 26 H 0.26 15.96 6.35 -92.71 -0.59 15.37 16 27 H 0.04 1.43 8.10 -2.39 -0.02 1.41 16 28 H 0.08 2.29 7.79 -2.39 -0.02 2.27 16 29 H 0.08 2.66 6.54 -2.39 -0.02 2.64 16 30 H 0.06 1.76 8.11 -2.38 -0.02 1.74 16 31 H 0.10 2.11 7.94 -2.38 -0.02 2.09 16 32 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.07 0.70 8.13 -2.39 -0.02 0.68 16 34 H 0.07 0.71 7.90 -2.39 -0.02 0.69 16 35 H 0.03 0.71 7.93 -2.39 -0.02 0.69 16 36 H 0.08 1.18 8.13 -2.39 -0.02 1.16 16 37 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.10 1.71 8.10 -2.39 -0.02 1.69 16 39 H 0.08 1.64 8.12 -2.38 -0.02 1.62 16 Total: -1.00 -76.01 327.99 0.12 -75.89 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 1.20 Total: 9.43 kcal Atomic # 6 Polarization: -24.47 SS G_CDS: 5.18 Total: -19.29 kcal Atomic # 7 Polarization: -132.68 SS G_CDS: -3.59 Total: -136.28 kcal Atomic # 8 Polarization: -97.96 SS G_CDS: -4.34 Total: -102.30 kcal Atomic # 14 Polarization: 51.25 SS G_CDS: 2.05 Total: 53.31 kcal Atomic # 16 Polarization: 119.62 SS G_CDS: -0.37 Total: 119.25 kcal Total: -76.01 0.12 -75.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619751639.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.167 kcal (2) G-P(sol) polarization free energy of solvation -76.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds