Wall clock time and date at job start Mon Mar 30 2020 20:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21300 * 119.99797 * 2 1 4 4 C 1.46781 * 120.00070 * 179.97438 * 2 1 3 5 5 C 1.40658 * 120.50186 * 180.02562 * 4 2 1 6 6 C 1.36751 * 118.46688 * 179.70647 * 5 4 2 7 7 C 1.39492 * 119.41018 * 0.55696 * 6 5 4 8 8 N 1.38321 * 119.50967 * 179.70681 * 7 6 5 9 9 C 1.48716 * 111.01832 * 64.21346 * 8 7 6 10 10 C 1.54379 * 104.51622 * 158.96483 * 9 8 7 11 11 C 1.54260 * 105.15098 * 336.27495 * 10 9 8 12 12 O 1.42902 * 110.32596 * 118.84074 * 11 10 9 13 13 C 1.50704 * 110.32313 * 240.94543 * 11 10 9 14 14 H 1.07995 * 119.99816 * 24.93829 * 13 11 10 15 15 C 1.37869 * 120.00070 * 204.93739 * 13 11 10 16 16 N 1.31516 * 120.00065 * 173.97159 * 15 13 11 17 17 Si 1.86807 * 119.99908 * 353.96983 * 15 13 11 18 18 H 1.48497 * 109.47255 * 87.09827 * 17 15 13 19 19 H 1.48500 * 109.47100 * 207.09379 * 17 15 13 20 20 H 1.48494 * 109.47398 * 327.09340 * 17 15 13 21 21 C 1.48556 * 110.99871 * 179.73135 * 8 7 6 22 22 N 1.32662 * 120.97852 * 359.42834 * 7 6 5 23 23 C 1.31592 * 121.66719 * 0.27343 * 22 7 6 24 24 H 1.08998 * 109.46842 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47384 * 300.00251 * 1 2 3 26 26 H 1.08997 * 109.46687 * 60.00460 * 1 2 3 27 27 H 1.07991 * 120.76710 * 0.02562 * 5 4 2 28 28 H 1.08000 * 120.29484 * 180.25655 * 6 5 4 29 29 H 1.09005 * 110.38641 * 40.24704 * 9 8 7 30 30 H 1.08994 * 110.51251 * 277.75566 * 9 8 7 31 31 H 1.08998 * 110.32712 * 217.32077 * 10 9 8 32 32 H 1.09005 * 110.32106 * 95.21790 * 10 9 8 33 33 H 0.96706 * 114.00139 * 56.18403 * 12 11 10 34 34 H 0.97002 * 119.99926 * 179.97438 * 16 15 13 35 35 H 1.09001 * 110.41437 * 82.17836 * 21 8 7 36 36 H 1.09005 * 110.51324 * 319.78044 * 21 8 7 37 37 H 1.08001 * 119.76337 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2409 -1.2712 0.0006 5 6 3.6474 -1.2835 0.0011 6 6 4.2887 -2.4913 0.0078 7 6 3.5367 -3.6661 0.0020 8 7 4.1833 -4.8889 0.0026 9 6 4.9607 -5.0806 1.2558 10 6 5.1532 -6.6087 1.3618 11 6 4.0008 -7.2184 0.5374 12 8 4.5205 -7.9896 -0.5476 13 6 3.1255 -8.0753 1.4153 14 1 3.0805 -7.8899 2.4783 15 6 2.3822 -9.0959 0.8615 16 7 1.7117 -9.9178 1.6390 17 14 2.3274 -9.3112 -0.9933 18 1 3.4677 -10.1576 -1.4273 19 1 1.0509 -9.9652 -1.3782 20 1 2.4198 -7.9820 -1.6489 21 6 3.2061 -6.0078 0.0024 22 7 2.2107 -3.6281 0.0015 23 6 1.5522 -2.4887 0.0010 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 4.2080 -0.3604 0.0015 28 1 5.3678 -2.5351 0.0126 29 1 4.3985 -4.7080 2.1121 30 1 5.9262 -4.5796 1.1867 31 1 5.0849 -6.9277 2.4018 32 1 6.1154 -6.8992 0.9398 33 1 5.1307 -8.6891 -0.2763 34 1 1.1885 -10.6356 1.2493 35 1 2.8518 -6.2029 -1.0098 36 1 2.3673 -5.7826 0.6612 37 1 0.4722 -2.4936 0.0010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000645344729.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:10:18 Heat of formation + Delta-G solvation = -52.166876 kcal Electronic energy + Delta-G solvation = -21276.333540 eV Core-core repulsion = 18018.338641 eV Total energy + Delta-G solvation = -3257.994900 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.98430 -40.49984 -39.40855 -36.99420 -34.43944 -33.73125 -33.35521 -31.56075 -30.01718 -29.39626 -26.72413 -25.12212 -24.24133 -22.59863 -21.28568 -21.00997 -19.56972 -18.68527 -17.78678 -17.47507 -17.15285 -16.62582 -16.10102 -15.88717 -15.71877 -15.51388 -15.23743 -14.98587 -14.66616 -14.31349 -14.09634 -13.76508 -13.63193 -13.19862 -13.09707 -13.00977 -12.95689 -12.63042 -12.41592 -12.06129 -11.79982 -11.17353 -11.12376 -11.03884 -10.86099 -10.64359 -10.46775 -10.28770 -9.29378 -8.34985 -6.47489 -0.58837 0.25840 1.31437 1.46600 1.51408 1.72516 2.44403 2.52109 2.80487 2.98919 3.07145 3.31157 3.56664 3.77050 3.83952 3.91432 4.00571 4.08359 4.21479 4.33712 4.48779 4.59269 4.66685 4.66714 4.71941 4.79711 4.93827 5.01327 5.04824 5.08679 5.23792 5.25772 5.35296 5.40205 5.68575 6.06532 6.07387 6.47843 6.59513 6.88049 7.02736 7.32780 8.77942 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.026772 B = 0.004716 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.618439 B = 5936.369258 C = 6467.142218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.411 3.589 3 O -0.503 6.503 4 C -0.269 4.269 5 C -0.003 4.003 6 C -0.190 4.190 7 C 0.319 3.681 8 N -0.466 5.466 9 C 0.055 3.945 10 C -0.137 4.137 11 C 0.215 3.785 12 O -0.565 6.565 13 C -0.548 4.548 14 H 0.045 0.955 15 C 0.029 3.971 16 N -0.936 5.936 17 Si 1.003 2.997 18 H -0.279 1.279 19 H -0.337 1.337 20 H -0.270 1.270 21 C 0.069 3.931 22 N -0.557 5.557 23 C 0.175 3.825 24 H 0.100 0.900 25 H 0.108 0.892 26 H 0.109 0.891 27 H 0.158 0.842 28 H 0.162 0.838 29 H 0.048 0.952 30 H 0.119 0.881 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.382 0.618 34 H 0.266 0.734 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.867 17.103 -3.040 17.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.292 3.708 3 O -0.382 6.382 4 C -0.273 4.273 5 C -0.028 4.028 6 C -0.212 4.212 7 C 0.088 3.912 8 N -0.183 5.183 9 C -0.069 4.069 10 C -0.175 4.175 11 C 0.175 3.825 12 O -0.375 6.375 13 C -0.586 4.586 14 H 0.063 0.937 15 C -0.171 4.171 16 N -0.574 5.574 17 Si 0.838 3.162 18 H -0.205 1.205 19 H -0.270 1.270 20 H -0.196 1.196 21 C -0.059 4.059 22 N -0.271 5.271 23 C 0.016 3.984 24 H 0.119 0.881 25 H 0.127 0.873 26 H 0.127 0.873 27 H 0.175 0.825 28 H 0.180 0.820 29 H 0.066 0.934 30 H 0.137 0.863 31 H 0.091 0.909 32 H 0.111 0.889 33 H 0.231 0.769 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 2.667 17.048 -3.797 17.668 hybrid contribution -0.117 -0.373 0.284 0.483 sum 2.550 16.675 -3.513 17.231 Atomic orbital electron populations 1.22285 0.90451 1.06431 1.06217 1.22626 0.93203 0.86016 0.68933 1.90527 1.73121 1.35128 1.39418 1.21608 0.95648 0.96813 1.13244 1.21637 0.93611 0.98661 0.88882 1.21458 1.02519 0.90467 1.06735 1.20674 0.88707 0.91986 0.89855 1.62327 1.21322 1.00199 1.34441 1.23211 0.98777 0.97529 0.87419 1.23000 0.99500 0.93694 1.01298 1.19858 0.90807 0.88240 0.83592 1.86107 1.64396 1.49942 1.37009 1.21604 1.27166 1.15282 0.94553 0.93663 1.25801 0.93536 0.94595 1.03176 1.70076 1.31941 1.17564 1.37798 0.84808 0.73812 0.77895 0.79725 1.20526 1.26990 1.19645 1.23152 0.93566 0.88198 1.00939 1.67857 1.09278 1.31738 1.18275 1.23600 1.01505 0.85348 0.87972 0.88136 0.87327 0.87312 0.82482 0.82021 0.93389 0.86296 0.90890 0.88886 0.76880 0.92483 0.92246 0.91699 0.78840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.27 10.19 71.24 0.73 -1.54 16 2 C 0.41 8.26 7.22 27.92 0.20 8.46 16 3 O -0.50 -13.29 17.15 -3.09 -0.05 -13.34 16 4 C -0.27 -6.07 5.89 -20.05 -0.12 -6.19 16 5 C 0.00 -0.06 9.65 22.51 0.22 0.16 16 6 C -0.19 -4.70 9.42 22.22 0.21 -4.49 16 7 C 0.32 10.21 6.16 133.30 0.82 11.03 16 8 N -0.47 -16.38 5.37 -687.60 -3.70 -20.07 16 9 C 0.06 1.65 6.03 86.42 0.52 2.17 16 10 C -0.14 -4.71 6.40 31.49 0.20 -4.51 16 11 C 0.22 9.41 0.90 -10.64 -0.01 9.40 16 12 O -0.57 -23.95 8.38 -148.98 -1.25 -25.20 16 13 C -0.55 -29.53 8.58 25.60 0.22 -29.31 16 14 H 0.05 2.69 7.84 -2.91 -0.02 2.66 16 15 C 0.03 1.63 5.46 84.65 0.46 2.10 16 16 N -0.94 -56.98 13.96 21.44 0.30 -56.68 16 17 Si 1.00 49.43 24.85 68.60 1.71 51.13 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 19 H -0.34 -17.09 7.11 99.48 0.71 -16.38 16 20 H -0.27 -13.34 5.24 99.48 0.52 -12.82 16 21 C 0.07 2.96 4.71 86.45 0.41 3.37 16 22 N -0.56 -18.34 8.37 -192.11 -1.61 -19.95 16 23 C 0.18 4.26 10.62 85.13 0.90 5.16 16 24 H 0.10 0.83 5.62 -2.39 -0.01 0.81 16 25 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.16 3.06 7.72 -2.92 -0.02 3.03 16 28 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 29 H 0.05 1.47 7.97 -2.38 -0.02 1.45 16 30 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.07 2.61 7.57 -2.39 -0.02 2.59 16 32 H 0.09 2.74 7.98 -2.38 -0.02 2.72 16 33 H 0.38 13.75 8.99 -74.05 -0.67 13.08 16 34 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 35 H 0.06 2.82 6.48 -2.39 -0.02 2.80 16 36 H 0.06 3.04 6.84 -2.38 -0.02 3.03 16 37 H 0.20 3.24 5.93 -2.91 -0.02 3.22 16 Total: -1.00 -72.32 302.51 0.42 -71.90 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.25 Total: 16.39 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: 4.76 Total: -4.19 kcal Atomic # 7 Polarization: -91.70 SS G_CDS: -5.00 Total: -96.70 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -1.30 Total: -38.54 kcal Atomic # 14 Polarization: 49.43 SS G_CDS: 1.71 Total: 51.13 kcal Total: -72.32 0.42 -71.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000645344729.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.735 kcal (2) G-P(sol) polarization free energy of solvation -72.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds