Wall clock time and date at job start Mon Mar 30 2020 20:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21314 * 120.00113 * 2 1 4 4 C 1.46657 * 120.00019 * 179.97438 * 2 1 3 5 5 C 1.40067 * 120.23560 * 354.19973 * 4 2 1 6 6 C 1.37626 * 119.89223 * 180.02562 * 5 4 2 7 7 C 1.38702 * 120.39628 * 359.97438 * 6 5 4 8 8 C 1.37932 * 120.49475 * 0.02587 * 7 6 5 9 9 C 1.38959 * 120.08523 * 359.97438 * 8 7 6 10 10 N 1.38704 * 120.19361 * 179.97438 * 9 8 7 11 11 C 1.46497 * 119.99775 * 5.44180 * 10 9 8 12 12 C 1.50701 * 109.46600 * 179.97438 * 11 10 9 13 13 O 1.21277 * 120.00262 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99753 * 179.97438 * 12 11 10 15 15 C 1.46507 * 120.00134 * 179.97438 * 14 12 11 16 16 C 1.50701 * 109.46992 * 180.02562 * 15 14 12 17 17 H 1.07998 * 120.00262 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99649 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99965 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99854 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.46930 * 89.99888 * 20 18 16 22 22 H 1.48508 * 109.46585 * 209.99550 * 20 18 16 23 23 H 1.48495 * 109.47186 * 329.99451 * 20 18 16 24 24 H 1.09000 * 109.47288 * 270.00342 * 1 2 3 25 25 H 1.09005 * 109.46863 * 30.00250 * 1 2 3 26 26 H 1.08998 * 109.47328 * 150.00176 * 1 2 3 27 27 H 1.07997 * 120.05284 * 359.97438 * 5 4 2 28 28 H 1.07997 * 119.79987 * 179.97438 * 6 5 4 29 29 H 1.08000 * 119.74789 * 180.02562 * 7 6 5 30 30 H 1.07990 * 119.95488 * 179.71953 * 8 7 6 31 31 H 0.96997 * 119.99584 * 185.44787 * 10 9 8 32 32 H 1.08998 * 109.47265 * 299.99521 * 11 10 9 33 33 H 1.08994 * 109.47127 * 60.00585 * 11 10 9 34 34 H 0.97003 * 120.00059 * 0.02562 * 14 12 11 35 35 H 1.08998 * 109.46864 * 300.00234 * 15 14 12 36 36 H 1.08999 * 109.46637 * 60.00226 * 15 14 12 37 37 H 0.97001 * 120.00248 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2403 -1.2701 0.0006 5 6 1.5503 -2.4828 0.1234 6 6 2.2456 -3.6705 0.1236 7 6 3.6273 -3.6749 0.0023 8 6 4.3230 -2.4902 -0.1196 9 6 3.6414 -1.2792 -0.1222 10 7 4.3388 -0.0865 -0.2441 11 6 5.7829 -0.1042 -0.4901 12 6 6.2942 1.3104 -0.5815 13 8 5.5279 2.2417 -0.4534 14 7 7.6032 1.5407 -0.8047 15 6 8.1003 2.9160 -0.8942 16 6 9.5858 2.8977 -1.1470 17 1 10.1075 1.9560 -1.2330 18 6 10.2788 4.0834 -1.2697 19 7 11.5751 4.0675 -1.4909 20 14 9.3763 5.7123 -1.1218 21 1 9.3727 6.1490 0.2975 22 1 10.0615 6.7349 -1.9527 23 1 7.9777 5.5478 -1.5928 24 1 -0.3634 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3634 -0.8900 -0.5138 27 1 0.4745 -2.4858 0.2186 28 1 1.7121 -4.6047 0.2189 29 1 4.1623 -4.6131 0.0033 30 1 5.3991 -2.5035 -0.2090 31 1 3.8704 0.7593 -0.1665 32 1 6.2846 -0.6200 0.3286 33 1 5.9857 -0.6246 -1.4261 34 1 8.2162 0.7959 -0.9068 35 1 7.5989 3.4309 -1.7136 36 1 7.8969 3.4373 0.0412 37 1 12.0626 4.9017 -1.5776 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755448824.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:10:40 Heat of formation + Delta-G solvation = -69.553595 kcal Electronic energy + Delta-G solvation = -20314.159680 eV Core-core repulsion = 17055.410836 eV Total energy + Delta-G solvation = -3258.748844 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.43208 -40.61191 -39.08611 -36.64330 -36.08361 -34.49694 -32.90972 -31.40778 -30.26805 -29.86610 -27.37045 -24.74353 -24.13328 -22.44449 -21.72187 -20.96467 -19.33191 -18.43256 -18.05714 -17.32553 -17.06756 -16.88318 -16.64479 -16.04193 -16.02241 -15.40248 -15.18497 -15.07345 -14.99768 -14.59551 -14.45085 -14.07317 -14.01282 -13.32595 -13.13996 -13.01889 -12.98522 -12.77387 -12.75265 -12.05152 -11.98494 -11.70670 -11.18243 -11.08133 -10.96226 -10.56063 -10.07658 -9.88911 -8.46938 -8.44061 -6.51099 -0.14832 0.72406 1.28692 1.31513 1.43709 1.50106 1.52840 1.99936 2.24208 2.66243 2.91168 2.99497 3.24918 3.70170 3.91128 4.15755 4.20258 4.26403 4.27344 4.49905 4.53086 4.66524 4.67686 4.68097 4.74482 4.95000 5.08330 5.14064 5.19801 5.30715 5.37963 5.51272 5.68789 5.91471 6.03174 6.30587 6.46795 6.49891 6.69252 6.90168 7.08751 7.25702 8.70471 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.029731 B = 0.003478 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.543429 B = 8047.913925 C = 8958.109321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.385 3.615 3 O -0.524 6.524 4 C -0.290 4.290 5 C -0.016 4.016 6 C -0.199 4.199 7 C -0.031 4.031 8 C -0.231 4.231 9 C 0.250 3.750 10 N -0.733 5.733 11 C 0.106 3.894 12 C 0.492 3.508 13 O -0.592 6.592 14 N -0.695 5.695 15 C 0.231 3.769 16 C -0.547 4.547 17 H 0.065 0.935 18 C 0.029 3.971 19 N -0.928 5.928 20 Si 0.934 3.066 21 H -0.265 1.265 22 H -0.271 1.271 23 H -0.265 1.265 24 H 0.115 0.885 25 H 0.081 0.919 26 H 0.116 0.884 27 H 0.163 0.837 28 H 0.155 0.845 29 H 0.154 0.846 30 H 0.139 0.861 31 H 0.413 0.587 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.414 0.586 35 H 0.012 0.988 36 H 0.011 0.989 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.696 -19.721 3.307 29.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.271 3.729 3 O -0.405 6.405 4 C -0.296 4.296 5 C -0.035 4.035 6 C -0.219 4.219 7 C -0.050 4.050 8 C -0.254 4.254 9 C 0.140 3.860 10 N -0.372 5.372 11 C -0.022 4.022 12 C 0.278 3.722 13 O -0.473 6.473 14 N -0.345 5.345 15 C 0.107 3.893 16 C -0.585 4.585 17 H 0.083 0.917 18 C -0.171 4.171 19 N -0.567 5.567 20 Si 0.758 3.242 21 H -0.190 1.190 22 H -0.196 1.196 23 H -0.189 1.189 24 H 0.133 0.867 25 H 0.100 0.900 26 H 0.134 0.866 27 H 0.180 0.820 28 H 0.172 0.828 29 H 0.171 0.829 30 H 0.157 0.843 31 H 0.262 0.738 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.251 0.749 35 H 0.030 0.970 36 H 0.029 0.971 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -21.550 -18.331 3.325 28.486 hybrid contribution 0.521 1.254 -0.059 1.359 sum -21.029 -17.076 3.266 27.285 Atomic orbital electron populations 1.22206 0.90292 1.05991 1.06082 1.23122 0.93931 0.86940 0.68880 1.90320 1.72079 1.36415 1.41685 1.20153 0.91993 0.96418 1.21005 1.21554 1.01055 0.89776 0.91076 1.21275 0.94358 0.98830 1.07449 1.21546 0.94905 0.97736 0.90813 1.21005 1.00984 0.90847 1.12539 1.18488 0.90839 0.86759 0.89870 1.45554 1.07066 1.08805 1.75739 1.21251 0.83064 0.92503 1.05365 1.21207 0.82486 0.92261 0.76211 1.90679 1.57027 1.47014 1.52603 1.45890 1.07968 1.10172 1.70513 1.19139 0.93596 0.80954 0.95612 1.21258 0.91346 0.94839 1.51008 0.91724 1.25547 0.95401 1.02548 0.93645 1.69964 1.08376 1.29065 1.49255 0.85909 0.79295 0.79705 0.79282 1.19023 1.19557 1.18933 0.86701 0.90046 0.86573 0.81978 0.82777 0.82854 0.84338 0.73788 0.86217 0.86363 0.74927 0.97027 0.97094 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.61 9.63 71.24 0.69 -1.93 16 2 C 0.39 9.71 7.20 27.89 0.20 9.91 16 3 O -0.52 -18.90 14.40 -3.14 -0.05 -18.95 16 4 C -0.29 -6.58 5.88 -20.05 -0.12 -6.70 16 5 C -0.02 -0.23 9.31 22.57 0.21 -0.02 16 6 C -0.20 -2.36 10.02 22.24 0.22 -2.13 16 7 C -0.03 -0.42 10.02 22.31 0.22 -0.20 16 8 C -0.23 -4.44 9.30 22.37 0.21 -4.23 16 9 C 0.25 6.47 6.66 38.82 0.26 6.73 16 10 N -0.73 -23.31 5.55 -342.42 -1.90 -25.21 16 11 C 0.11 2.92 5.42 85.63 0.46 3.38 16 12 C 0.49 19.17 7.90 87.66 0.69 19.87 16 13 O -0.59 -28.97 15.67 -3.02 -0.05 -29.02 16 14 N -0.70 -27.86 5.55 -466.78 -2.59 -30.45 16 15 C 0.23 11.54 4.50 85.63 0.38 11.93 16 16 C -0.55 -30.25 9.83 25.60 0.25 -30.00 16 17 H 0.06 3.70 7.84 -2.91 -0.02 3.68 16 18 C 0.03 1.67 5.47 84.66 0.46 2.13 16 19 N -0.93 -55.46 13.96 21.45 0.30 -55.16 16 20 Si 0.93 44.85 27.47 68.60 1.88 46.74 16 21 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 22 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.26 -12.81 6.54 99.48 0.65 -12.15 16 24 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.08 1.22 8.14 -2.38 -0.02 1.21 16 26 H 0.12 0.83 6.71 -2.39 -0.02 0.82 16 27 H 0.16 1.04 6.52 -2.91 -0.02 1.02 16 28 H 0.15 0.86 8.06 -2.91 -0.02 0.84 16 29 H 0.15 1.15 8.06 -2.91 -0.02 1.12 16 30 H 0.14 2.22 6.72 -2.92 -0.02 2.20 16 31 H 0.41 16.12 3.96 -94.56 -0.37 15.74 16 32 H 0.12 2.59 7.73 -2.39 -0.02 2.57 16 33 H 0.12 2.59 8.12 -2.39 -0.02 2.57 16 34 H 0.41 13.87 8.32 -92.71 -0.77 13.10 16 35 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 36 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 37 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -78.87 315.88 1.66 -77.21 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: -0.09 Total: 26.11 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 4.15 Total: 8.73 kcal Atomic # 7 Polarization: -106.64 SS G_CDS: -4.19 Total: -110.83 kcal Atomic # 8 Polarization: -47.88 SS G_CDS: -0.09 Total: -47.97 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.74 kcal Total: -78.87 1.66 -77.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755448824.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.660 kcal (2) G-P(sol) polarization free energy of solvation -78.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds