Wall clock time and date at job start Mon Mar 30 2020 20:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47311 * 2 1 4 4 C 1.50694 * 109.47203 * 239.99566 * 2 1 3 5 5 N 1.28013 * 120.00266 * 119.99918 * 4 2 1 6 6 N 1.40101 * 120.00180 * 179.97438 * 5 4 2 7 7 C 1.34783 * 120.00095 * 179.97438 * 6 5 4 8 8 O 1.21611 * 119.99899 * 0.02562 * 7 6 5 9 9 C 1.47490 * 119.99717 * 180.02562 * 7 6 5 10 10 C 1.39721 * 120.19756 * 0.25473 * 9 7 6 11 11 C 1.37790 * 119.90386 * 180.23612 * 10 9 7 12 12 C 1.38549 * 120.30294 * 359.76196 * 11 10 9 13 13 C 1.38065 * 120.39464 * 0.02562 * 12 11 10 14 14 C 1.38693 * 120.08495 * 359.97438 * 13 12 11 15 15 O 1.35655 * 120.14947 * 179.97438 * 14 13 12 16 16 C 1.53002 * 109.47124 * 119.99410 * 2 1 3 17 17 C 1.50706 * 109.46991 * 295.00231 * 16 2 1 18 18 H 1.07995 * 120.00188 * 359.97438 * 17 16 2 19 19 C 1.37876 * 119.99710 * 179.97438 * 17 16 2 20 20 N 1.31506 * 119.99727 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00217 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47070 * 89.99720 * 21 19 17 23 23 H 1.48497 * 109.47032 * 210.00003 * 21 19 17 24 24 H 1.48500 * 109.46934 * 329.99939 * 21 19 17 25 25 H 1.08996 * 109.47161 * 300.00764 * 1 2 3 26 26 H 1.09004 * 109.47171 * 60.00460 * 1 2 3 27 27 H 1.08994 * 109.47161 * 180.02562 * 1 2 3 28 28 H 1.08008 * 119.99863 * 300.00082 * 4 2 1 29 29 H 0.97001 * 120.00336 * 0.02562 * 6 5 4 30 30 H 1.07991 * 120.04707 * 0.02562 * 10 9 7 31 31 H 1.08000 * 119.84813 * 179.79454 * 11 10 9 32 32 H 1.08006 * 119.80220 * 180.02562 * 12 11 10 33 33 H 1.07996 * 119.95511 * 179.97438 * 13 12 11 34 34 H 0.96700 * 114.00230 * 90.00007 * 15 14 13 35 35 H 1.09001 * 109.46887 * 55.00073 * 16 2 1 36 36 H 1.08991 * 109.47067 * 174.99772 * 16 2 1 37 37 H 0.97009 * 119.99883 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 7 2.7683 -0.0884 -2.0731 6 7 3.2358 -0.7491 -3.2167 7 6 4.0102 -0.0941 -4.1042 8 8 4.3036 1.0704 -3.9121 9 6 4.5018 -0.7895 -5.3084 10 6 4.1628 -2.1258 -5.5358 11 6 4.6294 -2.7710 -6.6603 12 6 5.4299 -2.0995 -7.5701 13 6 5.7689 -0.7777 -7.3599 14 6 5.3082 -0.1124 -6.2336 15 8 5.6409 1.1861 -6.0255 16 6 2.0400 -0.7211 1.2493 17 6 1.6413 0.0573 2.4766 18 1 1.0806 0.9748 2.3756 19 6 1.9923 -0.4019 3.7284 20 7 1.6448 0.2777 4.7993 21 14 2.9615 -1.9892 3.9031 22 1 4.4152 -1.6868 3.8790 23 1 2.6131 -2.6427 5.1903 24 1 2.6266 -2.8999 2.7790 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.7714 -1.7445 -1.4012 29 1 3.0015 -1.6778 -3.3701 30 1 3.5388 -2.6531 -4.8295 31 1 4.3696 -3.8049 -6.8335 32 1 5.7908 -2.6130 -8.4490 33 1 6.3936 -0.2612 -8.0736 34 1 5.0183 1.8182 -6.4102 35 1 1.6054 -1.7197 1.2953 36 1 3.1262 -0.7994 1.2057 37 1 1.8920 -0.0452 5.6800 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765993125.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:10:54 Heat of formation + Delta-G solvation = -16.694742 kcal Electronic energy + Delta-G solvation = -19967.728296 eV Core-core repulsion = 16711.271584 eV Total energy + Delta-G solvation = -3256.456712 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.61641 -38.73294 -37.10196 -36.86708 -34.84040 -32.65974 -31.92600 -30.40275 -30.05677 -27.57001 -24.82985 -23.77155 -22.87486 -21.57399 -20.69791 -19.41058 -18.68623 -17.84637 -17.16592 -16.62915 -16.05522 -15.80613 -15.29861 -14.99118 -14.43917 -14.24222 -13.97157 -13.59082 -13.33620 -12.87132 -12.68601 -12.58773 -12.27361 -12.11203 -11.79515 -11.23633 -11.05513 -11.03098 -10.80810 -10.16210 -10.03915 -9.99450 -9.79020 -9.62448 -9.49468 -9.15836 -9.10275 -8.60899 -8.54191 -6.04655 -4.02812 0.40045 0.81148 2.17400 2.53566 2.85806 3.30778 3.38225 3.39304 3.48163 3.86436 4.29765 4.34092 4.44222 4.53487 4.82735 4.90974 5.05299 5.21502 5.27869 5.29429 5.39181 5.73130 5.81813 5.88465 5.93539 5.96988 6.05455 6.27070 6.37687 6.63970 6.77841 6.94605 7.14455 7.17494 7.32365 7.41806 7.70199 7.75501 8.50842 8.53165 9.00096 9.56999 11.08424 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.028281 B = 0.003119 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.815728 B = 8975.527763 C = 9188.217837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.032 4.032 3 H 0.086 0.914 4 C 0.101 3.899 5 N -0.250 5.250 6 N -0.591 5.591 7 C 0.572 3.428 8 O -0.488 6.488 9 C -0.160 4.160 10 C -0.073 4.073 11 C -0.138 4.138 12 C -0.078 4.078 13 C -0.156 4.156 14 C 0.172 3.828 15 O -0.477 6.477 16 C -0.003 4.003 17 C -0.516 4.516 18 H 0.077 0.923 19 C 0.068 3.932 20 N -0.901 5.901 21 Si 0.877 3.123 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.266 1.266 25 H 0.079 0.921 26 H 0.038 0.962 27 H 0.049 0.951 28 H 0.101 0.899 29 H 0.376 0.624 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.137 0.863 34 H 0.398 0.602 35 H 0.020 0.980 36 H 0.014 0.986 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.639 -8.126 -26.327 27.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.053 4.053 3 H 0.104 0.896 4 C -0.113 4.113 5 N -0.051 5.051 6 N -0.333 5.333 7 C 0.359 3.641 8 O -0.360 6.360 9 C -0.165 4.165 10 C -0.091 4.091 11 C -0.156 4.156 12 C -0.096 4.096 13 C -0.175 4.175 14 C 0.125 3.875 15 O -0.288 6.288 16 C -0.042 4.042 17 C -0.554 4.554 18 H 0.095 0.905 19 C -0.133 4.133 20 N -0.540 5.540 21 Si 0.705 3.295 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.191 1.191 25 H 0.098 0.902 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.119 0.881 29 H 0.215 0.785 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.155 0.845 34 H 0.256 0.744 35 H 0.039 0.961 36 H 0.032 0.968 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.848 -6.676 -26.055 27.330 hybrid contribution -0.225 -2.139 0.000 2.151 sum 4.623 -8.815 -26.055 27.892 Atomic orbital electron populations 1.21682 0.93853 1.01473 1.01712 1.20171 0.95827 1.00235 0.89080 0.89562 1.26777 0.92092 0.97844 0.94635 1.74593 1.11671 1.24133 0.94731 1.47011 1.51701 1.13483 1.21086 1.17755 0.78050 0.86546 0.81736 1.90830 1.54532 1.15653 1.74982 1.20386 1.03021 0.95725 0.97409 1.21282 0.97771 0.92748 0.97335 1.21116 0.99237 1.00593 0.94618 1.21259 0.95757 0.93774 0.98839 1.21485 1.02638 0.95935 0.97400 1.18493 0.91818 0.85910 0.91259 1.84765 1.51637 1.12441 1.79961 1.19610 0.95984 0.96204 0.92360 1.21043 1.35879 1.09682 0.88772 0.90453 1.24988 0.95540 0.96898 0.95908 1.69901 1.46885 1.39174 0.98062 0.86826 0.80801 0.84411 0.77494 1.20327 1.21397 1.19113 0.90193 0.94330 0.93204 0.88138 0.78518 0.85346 0.84973 0.84994 0.84512 0.74406 0.96141 0.96784 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.99 37.16 0.33 -1.86 16 2 C -0.03 -0.61 2.75 -91.77 -0.25 -0.87 16 3 H 0.09 1.81 8.11 -51.93 -0.42 1.39 16 4 C 0.10 1.68 9.65 -13.87 -0.13 1.54 16 5 N -0.25 -4.52 10.93 32.67 0.36 -4.16 16 6 N -0.59 -8.72 6.20 30.45 0.19 -8.53 16 7 C 0.57 8.98 7.88 -12.49 -0.10 8.88 16 8 O -0.49 -9.63 15.50 -16.61 -0.26 -9.88 16 9 C -0.16 -1.88 5.89 -104.85 -0.62 -2.50 16 10 C -0.07 -0.61 9.54 -39.19 -0.37 -0.99 16 11 C -0.14 -0.91 10.02 -39.63 -0.40 -1.30 16 12 C -0.08 -0.50 10.03 -39.53 -0.40 -0.89 16 13 C -0.16 -1.24 9.98 -39.48 -0.39 -1.63 16 14 C 0.17 1.89 6.72 -38.69 -0.26 1.63 16 15 O -0.48 -5.70 11.58 -40.54 -0.47 -6.17 16 16 C 0.00 -0.07 3.50 -27.88 -0.10 -0.17 16 17 C -0.52 -14.13 8.96 -34.44 -0.31 -14.44 16 18 H 0.08 2.26 7.30 -52.49 -0.38 1.88 16 19 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 20 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 21 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 25 H 0.08 1.52 6.95 -51.93 -0.36 1.15 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.10 1.33 8.00 -52.48 -0.42 0.91 16 29 H 0.38 4.04 6.66 -182.60 -1.22 2.83 16 30 H 0.13 0.81 6.40 -52.49 -0.34 0.48 16 31 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 32 H 0.13 0.47 8.06 -52.48 -0.42 0.05 16 33 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.40 3.14 9.06 45.56 0.41 3.56 16 35 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 36 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 321.77 15.07 4.85 4.85 Total: -1.00 -35.73 321.77 -7.09 -42.82 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -4.77 Total: 1.75 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -3.09 Total: -10.76 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 1.32 Total: -39.30 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.73 Total: -16.05 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.73 -7.09 -42.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765993125.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.127 kcal (2) G-P(sol) polarization free energy of solvation -35.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds