Wall clock time and date at job start Mon Mar 30 2020 20:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47311 * 2 1 4 4 C 1.50694 * 109.47203 * 239.99566 * 2 1 3 5 5 N 1.28013 * 120.00266 * 119.99918 * 4 2 1 6 6 N 1.40101 * 120.00180 * 179.97438 * 5 4 2 7 7 C 1.34783 * 120.00095 * 179.97438 * 6 5 4 8 8 O 1.21611 * 119.99899 * 0.02562 * 7 6 5 9 9 C 1.47490 * 119.99717 * 180.02562 * 7 6 5 10 10 C 1.39721 * 120.19756 * 0.25473 * 9 7 6 11 11 C 1.37790 * 119.90386 * 180.23612 * 10 9 7 12 12 C 1.38549 * 120.30294 * 359.76196 * 11 10 9 13 13 C 1.38065 * 120.39464 * 0.02562 * 12 11 10 14 14 C 1.38693 * 120.08495 * 359.97438 * 13 12 11 15 15 O 1.35655 * 120.14947 * 179.97438 * 14 13 12 16 16 C 1.53002 * 109.47124 * 119.99410 * 2 1 3 17 17 C 1.50706 * 109.46991 * 295.00231 * 16 2 1 18 18 H 1.07995 * 120.00188 * 359.97438 * 17 16 2 19 19 C 1.37876 * 119.99710 * 179.97438 * 17 16 2 20 20 N 1.31506 * 119.99727 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00217 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47070 * 89.99720 * 21 19 17 23 23 H 1.48497 * 109.47032 * 210.00003 * 21 19 17 24 24 H 1.48500 * 109.46934 * 329.99939 * 21 19 17 25 25 H 1.08996 * 109.47161 * 300.00764 * 1 2 3 26 26 H 1.09004 * 109.47171 * 60.00460 * 1 2 3 27 27 H 1.08994 * 109.47161 * 180.02562 * 1 2 3 28 28 H 1.08008 * 119.99863 * 300.00082 * 4 2 1 29 29 H 0.97001 * 120.00336 * 0.02562 * 6 5 4 30 30 H 1.07991 * 120.04707 * 0.02562 * 10 9 7 31 31 H 1.08000 * 119.84813 * 179.79454 * 11 10 9 32 32 H 1.08006 * 119.80220 * 180.02562 * 12 11 10 33 33 H 1.07996 * 119.95511 * 179.97438 * 13 12 11 34 34 H 0.96700 * 114.00230 * 90.00007 * 15 14 13 35 35 H 1.09001 * 109.46887 * 55.00073 * 16 2 1 36 36 H 1.08991 * 109.47067 * 174.99772 * 16 2 1 37 37 H 0.97009 * 119.99883 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 7 2.7683 -0.0884 -2.0731 6 7 3.2358 -0.7491 -3.2167 7 6 4.0102 -0.0941 -4.1042 8 8 4.3036 1.0704 -3.9121 9 6 4.5018 -0.7895 -5.3084 10 6 4.1628 -2.1258 -5.5358 11 6 4.6294 -2.7710 -6.6603 12 6 5.4299 -2.0995 -7.5701 13 6 5.7689 -0.7777 -7.3599 14 6 5.3082 -0.1124 -6.2336 15 8 5.6409 1.1861 -6.0255 16 6 2.0400 -0.7211 1.2493 17 6 1.6413 0.0573 2.4766 18 1 1.0806 0.9748 2.3756 19 6 1.9923 -0.4019 3.7284 20 7 1.6448 0.2777 4.7993 21 14 2.9615 -1.9892 3.9031 22 1 4.4152 -1.6868 3.8790 23 1 2.6131 -2.6427 5.1903 24 1 2.6266 -2.8999 2.7790 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.7714 -1.7445 -1.4012 29 1 3.0015 -1.6778 -3.3701 30 1 3.5388 -2.6531 -4.8295 31 1 4.3696 -3.8049 -6.8335 32 1 5.7908 -2.6130 -8.4490 33 1 6.3936 -0.2612 -8.0736 34 1 5.0183 1.8182 -6.4102 35 1 1.6054 -1.7197 1.2953 36 1 3.1262 -0.7994 1.2057 37 1 1.8920 -0.0452 5.6800 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765993125.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:10:54 Heat of formation + Delta-G solvation = -42.464478 kcal Electronic energy + Delta-G solvation = -19968.845756 eV Core-core repulsion = 16711.271584 eV Total energy + Delta-G solvation = -3257.574172 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.49520 -39.75223 -38.37760 -37.71221 -36.36844 -34.42640 -33.18176 -31.41280 -30.78748 -29.37371 -26.08845 -24.96705 -23.71118 -22.93485 -21.82361 -20.78873 -19.67639 -19.02737 -18.50196 -18.22322 -16.83216 -16.61564 -16.27986 -16.16523 -16.00945 -15.29199 -15.16779 -15.02211 -14.64049 -14.47686 -14.03305 -13.48406 -13.29734 -13.18368 -12.90557 -12.75412 -12.69982 -12.42767 -11.89236 -11.82617 -11.73073 -11.57204 -11.31766 -11.10278 -10.86410 -10.72063 -10.18310 -9.90457 -9.70378 -8.23476 -6.26607 -0.33369 0.22820 0.96665 1.39555 1.40664 1.41728 1.51553 1.91984 2.40049 2.69027 3.12139 3.20296 3.40934 3.76584 3.81691 3.97430 4.06817 4.30463 4.38146 4.40197 4.48050 4.63079 4.67722 4.84735 4.95019 5.06231 5.16692 5.20782 5.28272 5.35099 5.39429 5.48653 5.60529 5.70182 5.75542 6.07464 6.33819 6.51948 6.74518 6.80847 7.36595 7.38613 8.93041 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.028281 B = 0.003119 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.815728 B = 8975.527763 C = 9188.217837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.030 4.030 3 H 0.054 0.946 4 C 0.112 3.888 5 N -0.292 5.292 6 N -0.579 5.579 7 C 0.567 3.433 8 O -0.545 6.545 9 C -0.189 4.189 10 C -0.071 4.071 11 C -0.132 4.132 12 C -0.064 4.064 13 C -0.159 4.159 14 C 0.148 3.852 15 O -0.502 6.502 16 C 0.001 3.999 17 C -0.519 4.519 18 H 0.039 0.961 19 C 0.003 3.997 20 N -0.953 5.953 21 Si 0.945 3.055 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.235 1.235 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.145 0.855 29 H 0.399 0.601 30 H 0.149 0.851 31 H 0.168 0.832 32 H 0.169 0.831 33 H 0.154 0.846 34 H 0.407 0.593 35 H 0.042 0.958 36 H 0.009 0.991 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.123 -12.281 -29.287 32.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.051 4.051 3 H 0.073 0.927 4 C -0.102 4.102 5 N -0.094 5.094 6 N -0.323 5.323 7 C 0.357 3.643 8 O -0.421 6.421 9 C -0.194 4.194 10 C -0.089 4.089 11 C -0.149 4.149 12 C -0.082 4.082 13 C -0.177 4.177 14 C 0.101 3.899 15 O -0.315 6.315 16 C -0.037 4.037 17 C -0.558 4.558 18 H 0.057 0.943 19 C -0.193 4.193 20 N -0.594 5.594 21 Si 0.769 3.231 22 H -0.204 1.204 23 H -0.211 1.211 24 H -0.158 1.158 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.162 0.838 29 H 0.240 0.760 30 H 0.167 0.833 31 H 0.185 0.815 32 H 0.186 0.814 33 H 0.171 0.829 34 H 0.267 0.733 35 H 0.060 0.940 36 H 0.027 0.973 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.304 -10.869 -29.047 31.464 hybrid contribution -0.388 -0.797 0.806 1.198 sum 4.916 -11.666 -28.240 30.948 Atomic orbital electron populations 1.21594 0.92253 1.02902 1.01272 1.19943 0.97218 0.98511 0.89439 0.92704 1.26510 0.91473 0.99213 0.93033 1.74468 1.12271 1.26513 0.96196 1.46802 1.51199 1.14395 1.19862 1.18546 0.77118 0.86170 0.82508 1.90789 1.56737 1.18115 1.76426 1.20260 1.05395 0.97304 0.96442 1.21552 0.97602 0.91285 0.98490 1.21560 0.98017 1.02007 0.93355 1.21756 0.94060 0.92849 0.99533 1.21713 1.02578 0.96837 0.96584 1.18885 0.92833 0.85630 0.92528 1.84715 1.52484 1.13633 1.80658 1.19520 0.95709 0.96705 0.91813 1.21381 1.34663 1.08790 0.90929 0.94286 1.25963 0.96906 1.00969 0.95499 1.70066 1.48992 1.41584 0.98761 0.85734 0.78685 0.80165 0.78504 1.20400 1.21125 1.15817 0.93140 0.92293 0.90758 0.83810 0.75955 0.83332 0.81478 0.81378 0.82863 0.73341 0.94023 0.97270 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.06 8.99 71.98 0.65 -3.41 16 2 C -0.03 -1.14 2.75 -11.54 -0.03 -1.17 16 3 H 0.05 2.40 8.11 -2.39 -0.02 2.38 16 4 C 0.11 3.47 9.65 88.66 0.86 4.33 16 5 N -0.29 -10.38 10.93 -50.46 -0.55 -10.93 16 6 N -0.58 -16.39 6.20 -175.82 -1.09 -17.48 16 7 C 0.57 17.94 7.88 86.68 0.68 18.62 16 8 O -0.54 -22.55 15.50 16.85 0.26 -22.29 16 9 C -0.19 -4.27 5.89 -20.01 -0.12 -4.39 16 10 C -0.07 -0.97 9.54 22.52 0.21 -0.76 16 11 C -0.13 -1.12 10.02 22.24 0.22 -0.89 16 12 C -0.06 -0.53 10.03 22.30 0.22 -0.31 16 13 C -0.16 -2.15 9.98 22.34 0.22 -1.93 16 14 C 0.15 3.18 6.72 22.85 0.15 3.33 16 15 O -0.50 -12.61 11.58 -68.78 -0.80 -13.41 16 16 C 0.00 0.05 3.50 29.85 0.10 0.15 16 17 C -0.52 -29.18 8.96 25.60 0.23 -28.95 16 18 H 0.04 2.42 7.30 -2.91 -0.02 2.40 16 19 C 0.00 0.17 5.47 84.66 0.46 0.64 16 20 N -0.95 -59.77 13.96 21.45 0.30 -59.47 16 21 Si 0.95 43.54 27.47 68.60 1.88 45.42 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 24 H -0.24 -9.57 6.54 99.48 0.65 -8.92 16 25 H 0.05 1.96 6.95 -2.39 -0.02 1.94 16 26 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 27 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.15 3.15 8.00 -2.91 -0.02 3.13 16 29 H 0.40 7.47 6.66 -213.32 -1.42 6.05 16 30 H 0.15 1.29 6.40 -2.92 -0.02 1.27 16 31 H 0.17 0.30 8.06 -2.91 -0.02 0.28 16 32 H 0.17 0.21 8.06 -2.91 -0.02 0.19 16 33 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 34 H 0.41 7.21 9.06 -74.06 -0.67 6.54 16 35 H 0.04 1.70 7.20 -2.39 -0.02 1.68 16 36 H 0.01 0.41 7.57 -2.39 -0.02 0.39 16 37 H 0.26 15.53 8.31 -92.70 -0.77 14.76 16 Total: -1.00 -82.74 321.77 2.84 -79.90 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -1.04 Total: 12.99 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: 3.87 Total: -14.73 kcal Atomic # 7 Polarization: -86.54 SS G_CDS: -1.34 Total: -87.88 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -0.53 Total: -35.70 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.88 Total: 45.42 kcal Total: -82.74 2.84 -79.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765993125.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.439 kcal (2) G-P(sol) polarization free energy of solvation -82.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds