Wall clock time and date at job start Mon Mar 30 2020 20:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.46691 * 2 1 4 4 C 1.46498 * 120.00239 * 274.72301 * 3 2 1 5 5 C 1.53008 * 109.46912 * 85.00063 * 4 3 2 6 6 C 1.52996 * 117.49956 * 243.62412 * 5 4 3 7 7 C 1.52996 * 60.00042 * 252.51354 * 6 5 4 8 8 S 1.65597 * 119.99791 * 95.00526 * 3 2 1 9 9 O 1.42101 * 106.40154 * 203.53789 * 8 3 2 10 10 O 1.42106 * 106.40098 * 336.45446 * 8 3 2 11 11 N 1.65596 * 107.22389 * 89.99756 * 8 3 2 12 12 C 1.46498 * 120.00027 * 270.00475 * 11 8 3 13 13 C 1.46502 * 120.00149 * 89.99526 * 11 8 3 14 14 C 1.50702 * 109.46993 * 95.00515 * 13 11 8 15 15 H 1.08002 * 119.99502 * 359.97438 * 14 13 11 16 16 C 1.37873 * 119.99773 * 180.02562 * 14 13 11 17 17 N 1.31514 * 120.00239 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99744 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47140 * 89.99727 * 18 16 14 20 20 H 1.48501 * 109.47144 * 209.99756 * 18 16 14 21 21 H 1.48504 * 109.47067 * 329.99797 * 18 16 14 22 22 H 1.08995 * 109.47574 * 60.00208 * 1 2 3 23 23 H 1.09002 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47659 * 299.99430 * 1 2 3 25 25 H 1.08999 * 109.46983 * 240.00261 * 2 1 3 26 26 H 1.08998 * 109.47326 * 120.00250 * 2 1 3 27 27 H 1.08990 * 109.47572 * 205.00129 * 4 3 2 28 28 H 1.09003 * 109.47280 * 325.00485 * 4 3 2 29 29 H 1.08996 * 115.54495 * 29.33457 * 5 4 3 30 30 H 1.09000 * 117.50146 * 359.97438 * 6 5 4 31 31 H 1.08997 * 117.49805 * 145.02114 * 6 5 4 32 32 H 1.09001 * 117.50030 * 252.51432 * 7 6 5 33 33 H 1.08997 * 117.50531 * 107.48870 * 7 6 5 34 34 H 1.08996 * 109.47839 * 89.99157 * 12 11 8 35 35 H 1.09002 * 109.47537 * 209.99546 * 12 11 8 36 36 H 1.09005 * 109.47090 * 329.99442 * 12 11 8 37 37 H 1.09000 * 109.46966 * 215.00458 * 13 11 8 38 38 H 1.09003 * 109.47007 * 335.00155 * 13 11 8 39 39 H 0.96994 * 119.99621 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1639 2.1068 -1.2644 5 6 0.8230 2.7357 -1.6488 6 6 0.1573 2.2477 -2.9370 7 6 0.7943 3.6377 -2.8843 8 16 2.4121 2.1202 1.4287 9 8 2.3055 3.5186 1.1999 10 8 1.6868 1.4414 2.4448 11 7 4.0143 1.8138 1.7137 12 6 4.4090 0.6239 2.4717 13 6 5.0371 2.7326 1.2079 14 6 5.4043 3.7188 2.2866 15 1 4.9235 3.6666 3.2523 16 6 6.3532 4.6882 2.0404 17 7 6.9383 4.7521 0.8643 18 14 6.8078 5.9111 3.3774 19 1 7.9308 5.3685 4.1834 20 1 7.2203 7.1946 2.7548 21 1 5.6337 6.1422 4.2568 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.9130 2.8901 -1.1497 28 1 2.4781 1.4151 -2.0461 29 1 0.1729 3.0024 -0.8157 30 1 0.6747 1.4788 -3.5109 31 1 -0.9312 2.1931 -2.9515 32 1 0.1249 4.4977 -2.8641 33 1 1.7305 3.7831 -3.4232 34 1 4.5591 -0.2103 1.7863 35 1 5.3366 0.8254 3.0074 36 1 3.6248 0.3711 3.1854 37 1 5.9219 2.1666 0.9166 38 1 4.6477 3.2689 0.3425 39 1 7.6056 5.4344 0.6911 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766009287.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:02 Heat of formation + Delta-G solvation = -73.518672 kcal Electronic energy + Delta-G solvation = -20962.917725 eV Core-core repulsion = 17839.440894 eV Total energy + Delta-G solvation = -3123.476832 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.129 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.08542 -38.33425 -37.21797 -36.81660 -36.47958 -34.51490 -31.54714 -29.68153 -27.40264 -26.77840 -24.19278 -23.57808 -23.19720 -21.72252 -19.88652 -18.96947 -18.33665 -18.24772 -17.53232 -16.79484 -16.28489 -15.54242 -15.50130 -15.14672 -15.01095 -14.64030 -14.19145 -14.10743 -13.91880 -13.84078 -13.32337 -13.13632 -13.06873 -13.02324 -12.92855 -12.56193 -12.48257 -12.42045 -12.37238 -12.28509 -12.00452 -11.79983 -11.74240 -11.27930 -10.77170 -10.60516 -10.10022 -9.76138 -8.21772 -6.33670 -0.34909 1.37430 1.39864 1.50473 2.04160 2.38668 2.56694 2.94615 3.08904 3.39947 3.70546 3.86904 4.08177 4.11870 4.12295 4.35579 4.43544 4.49812 4.63445 4.69341 4.74889 4.81292 4.84264 4.87094 4.94996 5.04319 5.06613 5.17353 5.25692 5.29113 5.32564 5.41625 5.45582 5.66389 5.73127 5.97348 6.09723 6.74008 7.35116 8.85706 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.021240 B = 0.006342 C = 0.005433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.977657 B = 4413.865602 C = 5152.753292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.115 3.885 3 N -0.998 5.998 4 C 0.155 3.845 5 C -0.188 4.188 6 C -0.149 4.149 7 C -0.183 4.183 8 S 2.787 3.213 9 O -1.006 7.006 10 O -1.007 7.007 11 N -1.007 6.007 12 C 0.088 3.912 13 C 0.274 3.726 14 C -0.551 4.551 15 H 0.048 0.952 16 C 0.014 3.986 17 N -0.922 5.922 18 Si 0.955 3.045 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.277 1.277 22 H 0.070 0.930 23 H 0.088 0.912 24 H 0.033 0.967 25 H 0.107 0.893 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.109 0.891 29 H 0.082 0.918 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.028 0.972 38 H 0.017 0.983 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.464 -11.252 -7.551 17.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.009 4.009 3 N -0.838 5.838 4 C 0.030 3.970 5 C -0.208 4.208 6 C -0.186 4.186 7 C -0.221 4.221 8 S 2.797 3.203 9 O -0.990 6.990 10 O -0.991 6.991 11 N -0.848 5.848 12 C -0.057 4.057 13 C 0.150 3.850 14 C -0.591 4.591 15 H 0.066 0.934 16 C -0.186 4.186 17 N -0.562 5.562 18 Si 0.780 3.220 19 H -0.189 1.189 20 H -0.201 1.201 21 H -0.202 1.202 22 H 0.089 0.911 23 H 0.107 0.893 24 H 0.052 0.948 25 H 0.125 0.875 26 H 0.095 0.905 27 H 0.077 0.923 28 H 0.127 0.873 29 H 0.101 0.899 30 H 0.132 0.868 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.046 0.954 38 H 0.035 0.965 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.890 -10.687 -7.085 16.822 hybrid contribution 0.659 0.928 0.643 1.307 sum -10.231 -9.759 -6.442 15.537 Atomic orbital electron populations 1.22252 0.95537 1.03333 1.01933 1.21486 0.95187 0.79983 1.04249 1.57914 1.79535 1.24620 1.21748 1.20914 0.95178 0.95322 0.85593 1.22671 0.99329 1.05928 0.92883 1.23118 1.00615 0.96980 0.97894 1.23044 1.03572 0.95018 1.00447 1.01602 0.72794 0.72522 0.73423 1.93559 1.86537 1.32885 1.86038 1.93483 1.71713 1.76440 1.57460 1.57623 1.24587 1.34676 1.67906 1.21568 1.02150 0.85883 0.96104 1.18600 0.86424 0.86741 0.93241 1.21819 1.22296 1.15196 0.99750 0.93361 1.25720 0.95845 0.99048 0.97968 1.69996 1.27656 1.35596 1.22918 0.85604 0.78574 0.78591 0.79251 1.18889 1.20149 1.20168 0.91114 0.89318 0.94775 0.87471 0.90530 0.92345 0.87271 0.89925 0.86846 0.87872 0.88670 0.88160 0.90766 0.91185 0.90863 0.95406 0.96548 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.54 10.02 71.98 0.72 -2.82 16 2 C 0.12 2.57 6.09 86.38 0.53 3.09 16 3 N -1.00 -30.24 2.87 -515.78 -1.48 -31.71 16 4 C 0.16 4.38 5.65 86.38 0.49 4.87 16 5 C -0.19 -4.90 4.81 -10.79 -0.05 -4.95 16 6 C -0.15 -2.66 9.62 30.59 0.29 -2.37 16 7 C -0.18 -4.09 10.25 30.59 0.31 -3.78 16 8 S 2.79 115.22 5.96 -56.49 -0.34 114.88 16 9 O -1.01 -50.78 16.08 -128.00 -2.06 -52.84 16 10 O -1.01 -42.59 15.71 -128.00 -2.01 -44.60 16 11 N -1.01 -42.92 3.23 -543.21 -1.75 -44.67 16 12 C 0.09 3.01 10.68 127.77 1.36 4.38 16 13 C 0.27 14.13 5.08 85.63 0.43 14.56 16 14 C -0.55 -31.93 9.38 25.60 0.24 -31.69 16 15 H 0.05 2.83 7.81 -2.91 -0.02 2.80 16 16 C 0.01 0.80 5.46 84.65 0.46 1.26 16 17 N -0.92 -54.31 13.29 21.45 0.28 -54.02 16 18 Si 0.96 45.22 29.54 68.60 2.03 47.24 16 19 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 22 H 0.07 1.34 6.53 -2.39 -0.02 1.33 16 23 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.11 1.69 8.00 -2.39 -0.02 1.67 16 26 H 0.08 1.71 7.61 -2.39 -0.02 1.69 16 27 H 0.06 2.03 7.30 -2.39 -0.02 2.01 16 28 H 0.11 2.28 7.73 -2.39 -0.02 2.27 16 29 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.11 1.59 8.03 -2.39 -0.02 1.57 16 31 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.07 2.47 8.07 -2.39 -0.02 2.45 16 36 H 0.07 2.36 7.02 -2.38 -0.02 2.34 16 37 H 0.03 1.45 8.11 -2.39 -0.02 1.43 16 38 H 0.02 0.91 7.31 -2.39 -0.02 0.89 16 39 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -72.25 333.87 0.48 -71.77 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 1.01 Total: 11.40 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: 4.79 Total: -17.45 kcal Atomic # 7 Polarization: -127.46 SS G_CDS: -2.94 Total: -130.41 kcal Atomic # 8 Polarization: -93.37 SS G_CDS: -4.07 Total: -97.44 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Atomic # 16 Polarization: 115.22 SS G_CDS: -0.34 Total: 114.88 kcal Total: -72.25 0.48 -71.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766009287.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.749 kcal (2) G-P(sol) polarization free energy of solvation -72.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds