Wall clock time and date at job start Mon Mar 30 2020 20:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46631 * 2 1 4 4 N 1.46492 * 109.47394 * 119.99670 * 2 1 3 5 5 C 1.34776 * 119.99985 * 275.00306 * 4 2 1 6 6 O 1.21280 * 120.00275 * 359.97438 * 5 4 2 7 7 C 1.50705 * 120.00159 * 180.02562 * 5 4 2 8 8 C 1.50701 * 109.47269 * 179.97438 * 7 5 4 9 9 C 1.37641 * 120.12426 * 264.99743 * 8 7 5 10 10 C 1.38614 * 120.24436 * 179.97438 * 9 8 7 11 11 C 1.38662 * 120.50282 * 0.02665 * 10 9 8 12 12 C 1.37597 * 120.24848 * 0.02562 * 11 10 9 13 13 C 1.40696 * 120.12518 * 84.72367 * 8 7 5 14 14 C 1.41395 * 120.24898 * 359.97438 * 13 8 7 15 15 H 1.08000 * 119.99881 * 333.90030 * 14 13 8 16 16 C 1.39946 * 120.00305 * 153.89713 * 14 13 8 17 17 N 1.30826 * 119.99699 * 343.71046 * 16 14 13 18 18 Si 1.86798 * 120.00094 * 163.70826 * 16 14 13 19 19 H 1.48500 * 109.46937 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47083 * 120.00191 * 18 16 14 21 21 H 1.48501 * 109.46984 * 240.00581 * 18 16 14 22 22 C 1.50695 * 109.47071 * 240.00231 * 2 1 3 23 23 N 1.34776 * 120.00319 * 59.99778 * 22 2 1 24 24 O 1.21288 * 119.99731 * 239.99540 * 22 2 1 25 25 H 1.09000 * 109.47234 * 299.99989 * 1 2 3 26 26 H 1.08998 * 109.46797 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47315 * 60.00400 * 1 2 3 28 28 H 0.96999 * 120.00051 * 95.00466 * 4 2 1 29 29 H 1.09001 * 109.47016 * 299.99762 * 7 5 4 30 30 H 1.09001 * 109.46914 * 59.99775 * 7 5 4 31 31 H 1.07988 * 119.87652 * 0.02562 * 9 8 7 32 32 H 1.07992 * 119.75281 * 180.02562 * 10 9 8 33 33 H 1.07995 * 119.87781 * 180.02562 * 11 10 9 34 34 H 1.07996 * 120.12906 * 179.97438 * 12 11 10 35 35 H 0.97000 * 119.99308 * 179.97438 * 17 16 14 36 36 H 0.96994 * 120.00388 * 359.97438 * 23 22 2 37 37 H 0.97007 * 119.99886 * 180.02562 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.1470 -0.0181 2.3571 6 8 1.8590 1.1588 2.4114 7 6 2.6500 -0.7282 3.5875 8 6 2.7011 0.2403 4.7409 9 6 3.8738 0.8952 5.0415 10 6 3.9235 1.7870 6.1016 11 6 2.7956 2.0294 6.8708 12 6 1.6129 1.3851 6.5891 13 6 1.5489 0.4827 5.5110 14 6 0.3370 -0.1795 5.2076 15 1 0.1462 -0.5223 4.2013 16 6 -0.6152 -0.3909 6.2111 17 7 -0.2760 -0.2756 7.4693 18 14 -2.3704 -0.8378 5.7540 19 1 -2.4952 -0.9048 4.2758 20 1 -2.7138 -2.1581 6.3406 21 1 -3.2976 0.1949 6.2822 22 6 2.0323 -0.7103 -1.2305 23 7 1.7067 -0.2499 -2.4546 24 8 2.7297 -1.6964 -1.1192 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 -0.8900 28 1 2.2491 -1.6316 1.1526 29 1 1.9778 -1.5506 3.8326 30 1 3.6494 -1.1200 3.3978 31 1 4.7582 0.7143 4.4488 32 1 4.8477 2.2968 6.3301 33 1 2.8456 2.7265 7.6941 34 1 0.7357 1.5751 7.1898 35 1 -0.9362 -0.4218 8.1649 36 1 1.1487 0.5385 -2.5436 37 1 2.0298 -0.7074 -3.2466 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776755050.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:04 Heat of formation + Delta-G solvation = -67.218240 kcal Electronic energy + Delta-G solvation = -21147.982844 eV Core-core repulsion = 17889.335268 eV Total energy + Delta-G solvation = -3258.647576 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.17596 -38.80988 -37.25956 -34.67075 -33.91926 -33.57780 -31.80508 -30.17669 -29.38680 -26.70593 -25.08855 -24.42441 -21.06380 -20.85607 -20.10071 -19.38750 -18.02995 -17.15072 -16.98194 -15.88256 -15.63022 -15.38756 -15.02662 -14.47620 -14.40333 -13.79520 -13.59743 -13.35165 -13.07801 -12.57559 -12.49945 -12.35049 -11.72869 -11.64057 -11.52774 -11.13073 -10.96892 -10.94282 -10.64290 -10.35407 -10.09873 -9.96700 -9.43852 -9.33108 -9.18678 -9.12312 -8.79522 -7.26478 -7.24738 -6.69701 -4.30079 2.39238 2.79845 2.95194 3.09162 3.14068 3.16424 3.30008 3.36315 3.76371 3.96454 4.60637 4.70311 5.03076 5.11860 5.41469 5.60019 5.76763 5.87895 6.08386 6.16434 6.19938 6.34298 6.47903 6.49968 6.56082 6.69101 6.85096 7.05535 7.13034 7.34358 7.46913 7.68788 7.91439 7.97478 8.01449 8.12323 8.17728 8.36199 8.69310 8.85761 8.96200 9.06128 10.24516 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.016122 B = 0.005859 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.356297 B = 4778.001300 C = 6081.994120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.125 3.875 3 H 0.112 0.888 4 N -0.729 5.729 5 C 0.520 3.480 6 O -0.522 6.522 7 C -0.070 4.070 8 C -0.180 4.180 9 C -0.081 4.081 10 C -0.239 4.239 11 C -0.108 4.108 12 C -0.159 4.159 13 C 0.129 3.871 14 C -0.456 4.456 15 H 0.075 0.925 16 C 0.076 3.924 17 N -0.796 5.796 18 Si 0.902 3.098 19 H -0.262 1.262 20 H -0.275 1.275 21 H -0.273 1.273 22 C 0.517 3.483 23 N -0.852 5.852 24 O -0.539 6.539 25 H 0.081 0.919 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.406 0.594 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.278 0.722 36 H 0.403 0.597 37 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.434 -1.064 -14.119 14.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.016 3.984 3 H 0.130 0.870 4 N -0.386 5.386 5 C 0.308 3.692 6 O -0.396 6.396 7 C -0.109 4.109 8 C -0.182 4.182 9 C -0.100 4.100 10 C -0.259 4.259 11 C -0.126 4.126 12 C -0.179 4.179 13 C 0.127 3.873 14 C -0.485 4.485 15 H 0.093 0.907 16 C -0.141 4.141 17 N -0.421 5.421 18 Si 0.727 3.273 19 H -0.185 1.185 20 H -0.201 1.201 21 H -0.198 1.198 22 C 0.301 3.699 23 N -0.416 5.416 24 O -0.415 6.415 25 H 0.100 0.900 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.242 0.758 29 H 0.116 0.884 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.135 0.865 35 H 0.089 0.911 36 H 0.232 0.768 37 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -0.300 -0.847 -13.546 13.576 hybrid contribution -0.882 -0.395 -0.602 1.139 sum -1.182 -1.242 -14.148 14.252 Atomic orbital electron populations 1.22163 0.93084 1.03052 1.03637 1.20629 0.95586 0.98213 0.83951 0.87009 1.45967 1.69618 1.14634 1.08364 1.21290 0.76554 0.87616 0.83770 1.90669 1.48284 1.16154 1.84447 1.20258 1.01142 0.98901 0.90647 1.19062 0.94202 1.04165 1.00777 1.20310 0.95916 0.96941 0.96784 1.20304 0.97637 1.06427 1.01492 1.20676 0.94153 0.99435 0.98339 1.21293 0.96947 0.98624 1.00986 1.17341 0.91048 0.88997 0.89960 1.19498 1.00017 1.32993 0.96034 0.90731 1.25877 1.00460 0.93260 0.94464 1.69834 1.35399 1.36530 1.00368 0.86358 0.82318 0.78567 0.80053 1.18540 1.20068 1.19780 1.20828 0.79282 0.84244 0.85513 1.43786 1.56034 1.33975 1.07826 1.90739 1.37667 1.26344 1.86763 0.90021 0.91898 0.91657 0.75835 0.88421 0.90406 0.89743 0.89700 0.89624 0.86540 0.91073 0.76776 0.76698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.38 37.16 0.35 -1.50 16 2 C 0.13 1.62 2.98 -69.09 -0.21 1.42 16 3 H 0.11 1.49 7.58 -51.93 -0.39 1.10 16 4 N -0.73 -11.38 4.95 -54.94 -0.27 -11.66 16 5 C 0.52 10.20 7.40 -10.98 -0.08 10.11 16 6 O -0.52 -12.12 15.70 5.56 0.09 -12.04 16 7 C -0.07 -1.40 5.18 -29.03 -0.15 -1.55 16 8 C -0.18 -4.39 4.43 -103.91 -0.46 -4.85 16 9 C -0.08 -1.90 9.66 -39.66 -0.38 -2.29 16 10 C -0.24 -5.64 10.05 -39.29 -0.39 -6.04 16 11 C -0.11 -2.65 10.02 -39.66 -0.40 -3.05 16 12 C -0.16 -4.28 8.69 -38.87 -0.34 -4.62 16 13 C 0.13 3.46 5.56 -106.82 -0.59 2.86 16 14 C -0.46 -11.97 8.14 -37.74 -0.31 -12.28 16 15 H 0.07 1.91 6.67 -52.49 -0.35 1.55 16 16 C 0.08 1.92 5.16 -17.34 -0.09 1.83 16 17 N -0.80 -20.60 10.96 55.55 0.61 -19.99 16 18 Si 0.90 18.83 29.59 -169.99 -5.03 13.80 16 19 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 20 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 C 0.52 6.05 7.49 -10.99 -0.08 5.96 16 23 N -0.85 -5.98 8.77 31.22 0.27 -5.70 16 24 O -0.54 -8.25 16.67 5.55 0.09 -8.15 16 25 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.52 7.56 -51.93 -0.39 0.13 16 28 H 0.41 5.85 7.79 -40.82 -0.32 5.53 16 29 H 0.10 1.93 7.08 -51.93 -0.37 1.56 16 30 H 0.08 1.34 8.05 -51.93 -0.42 0.93 16 31 H 0.08 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.08 1.78 8.06 -52.49 -0.42 1.35 16 33 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 34 H 0.12 3.21 6.20 -52.49 -0.33 2.89 16 35 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 36 H 0.40 1.74 8.25 -40.82 -0.34 1.41 16 37 H 0.40 2.30 8.93 -40.82 -0.36 1.94 16 LS Contribution 318.98 15.07 4.81 4.81 Total: -1.00 -32.84 318.98 -7.08 -39.93 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -4.52 Total: 12.99 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -3.14 Total: -13.98 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.61 Total: -37.36 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: 0.18 Total: -20.19 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.84 -7.08 -39.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776755050.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.289 kcal (2) G-P(sol) polarization free energy of solvation -32.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds