Wall clock time and date at job start Mon Mar 30 2020 20:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46631 * 2 1 4 4 N 1.46492 * 109.47394 * 119.99670 * 2 1 3 5 5 C 1.34776 * 119.99985 * 275.00306 * 4 2 1 6 6 O 1.21280 * 120.00275 * 359.97438 * 5 4 2 7 7 C 1.50705 * 120.00159 * 180.02562 * 5 4 2 8 8 C 1.50701 * 109.47269 * 179.97438 * 7 5 4 9 9 C 1.37641 * 120.12426 * 264.99743 * 8 7 5 10 10 C 1.38614 * 120.24436 * 179.97438 * 9 8 7 11 11 C 1.38662 * 120.50282 * 0.02665 * 10 9 8 12 12 C 1.37597 * 120.24848 * 0.02562 * 11 10 9 13 13 C 1.40696 * 120.12518 * 84.72367 * 8 7 5 14 14 C 1.41395 * 120.24898 * 359.97438 * 13 8 7 15 15 H 1.08000 * 119.99881 * 333.90030 * 14 13 8 16 16 C 1.39946 * 120.00305 * 153.89713 * 14 13 8 17 17 N 1.30826 * 119.99699 * 343.71046 * 16 14 13 18 18 Si 1.86798 * 120.00094 * 163.70826 * 16 14 13 19 19 H 1.48500 * 109.46937 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47083 * 120.00191 * 18 16 14 21 21 H 1.48501 * 109.46984 * 240.00581 * 18 16 14 22 22 C 1.50695 * 109.47071 * 240.00231 * 2 1 3 23 23 N 1.34776 * 120.00319 * 59.99778 * 22 2 1 24 24 O 1.21288 * 119.99731 * 239.99540 * 22 2 1 25 25 H 1.09000 * 109.47234 * 299.99989 * 1 2 3 26 26 H 1.08998 * 109.46797 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47315 * 60.00400 * 1 2 3 28 28 H 0.96999 * 120.00051 * 95.00466 * 4 2 1 29 29 H 1.09001 * 109.47016 * 299.99762 * 7 5 4 30 30 H 1.09001 * 109.46914 * 59.99775 * 7 5 4 31 31 H 1.07988 * 119.87652 * 0.02562 * 9 8 7 32 32 H 1.07992 * 119.75281 * 180.02562 * 10 9 8 33 33 H 1.07995 * 119.87781 * 180.02562 * 11 10 9 34 34 H 1.07996 * 120.12906 * 179.97438 * 12 11 10 35 35 H 0.97000 * 119.99308 * 179.97438 * 17 16 14 36 36 H 0.96994 * 120.00388 * 359.97438 * 23 22 2 37 37 H 0.97007 * 119.99886 * 180.02562 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.1470 -0.0181 2.3571 6 8 1.8590 1.1588 2.4114 7 6 2.6500 -0.7282 3.5875 8 6 2.7011 0.2403 4.7409 9 6 3.8738 0.8952 5.0415 10 6 3.9235 1.7870 6.1016 11 6 2.7956 2.0294 6.8708 12 6 1.6129 1.3851 6.5891 13 6 1.5489 0.4827 5.5110 14 6 0.3370 -0.1795 5.2076 15 1 0.1462 -0.5223 4.2013 16 6 -0.6152 -0.3909 6.2111 17 7 -0.2760 -0.2756 7.4693 18 14 -2.3704 -0.8378 5.7540 19 1 -2.4952 -0.9048 4.2758 20 1 -2.7138 -2.1581 6.3406 21 1 -3.2976 0.1949 6.2822 22 6 2.0323 -0.7103 -1.2305 23 7 1.7067 -0.2499 -2.4546 24 8 2.7297 -1.6964 -1.1192 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 -0.8900 28 1 2.2491 -1.6316 1.1526 29 1 1.9778 -1.5506 3.8326 30 1 3.6494 -1.1200 3.3978 31 1 4.7582 0.7143 4.4488 32 1 4.8477 2.2968 6.3301 33 1 2.8456 2.7265 7.6941 34 1 0.7357 1.5751 7.1898 35 1 -0.9362 -0.4218 8.1649 36 1 1.1487 0.5385 -2.5436 37 1 2.0298 -0.7074 -3.2466 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776755050.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:04 Heat of formation + Delta-G solvation = -91.688161 kcal Electronic energy + Delta-G solvation = -21149.043939 eV Core-core repulsion = 17889.335268 eV Total energy + Delta-G solvation = -3259.708671 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.34190 -40.21757 -39.02314 -35.92404 -35.47662 -34.81818 -33.50082 -31.49978 -31.23240 -28.38611 -26.87882 -25.56198 -22.81491 -22.41169 -21.26764 -21.02223 -19.15132 -18.87616 -18.18087 -17.26627 -17.05614 -16.73468 -16.31444 -16.09212 -15.91475 -15.34406 -15.05100 -14.86864 -14.50307 -14.35725 -13.70044 -13.52544 -13.37067 -13.33664 -12.88942 -12.76767 -12.72098 -12.54466 -12.46821 -12.09074 -11.30680 -11.19675 -11.11393 -11.01357 -10.79580 -10.72654 -10.12172 -9.20522 -9.14813 -8.57431 -6.27029 1.00384 1.14616 1.37415 1.46577 1.50776 1.53969 1.80257 2.08029 2.21750 2.65397 2.80903 3.74812 3.83932 4.01121 4.10294 4.20166 4.41865 4.45797 4.62310 4.64417 4.72912 4.80381 4.83035 5.07880 5.19417 5.22867 5.39113 5.45139 5.56826 5.79458 5.83766 6.06075 6.18914 6.23520 6.33483 6.44395 6.59684 6.76431 7.01761 7.13300 7.22480 7.38769 8.39252 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.016122 B = 0.005859 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.356297 B = 4778.001300 C = 6081.994120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.120 3.880 3 H 0.109 0.891 4 N -0.717 5.717 5 C 0.524 3.476 6 O -0.565 6.565 7 C -0.071 4.071 8 C -0.188 4.188 9 C -0.092 4.092 10 C -0.242 4.242 11 C -0.117 4.117 12 C -0.192 4.192 13 C 0.097 3.903 14 C -0.480 4.480 15 H 0.072 0.928 16 C 0.035 3.965 17 N -0.827 5.827 18 Si 0.972 3.028 19 H -0.260 1.260 20 H -0.263 1.263 21 H -0.269 1.269 22 C 0.523 3.477 23 N -0.824 5.824 24 O -0.578 6.578 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.106 0.894 28 H 0.413 0.587 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.285 0.715 36 H 0.420 0.580 37 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.502 -1.495 -16.260 16.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.011 3.989 3 H 0.127 0.873 4 N -0.372 5.372 5 C 0.312 3.688 6 O -0.442 6.442 7 C -0.110 4.110 8 C -0.189 4.189 9 C -0.110 4.110 10 C -0.261 4.261 11 C -0.135 4.135 12 C -0.212 4.212 13 C 0.095 3.905 14 C -0.510 4.510 15 H 0.090 0.910 16 C -0.179 4.179 17 N -0.454 5.454 18 Si 0.793 3.207 19 H -0.183 1.183 20 H -0.188 1.188 21 H -0.194 1.194 22 C 0.307 3.693 23 N -0.389 5.389 24 O -0.458 6.458 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.124 0.876 28 H 0.250 0.750 29 H 0.115 0.885 30 H 0.126 0.874 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.123 0.877 34 H 0.116 0.884 35 H 0.096 0.904 36 H 0.252 0.748 37 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -0.374 -1.279 -15.750 15.806 hybrid contribution -0.771 -0.221 0.000 0.802 sum -1.144 -1.500 -15.750 15.862 Atomic orbital electron populations 1.22126 0.91824 1.03354 1.04071 1.20829 0.96562 0.97920 0.83557 0.87321 1.45788 1.68289 1.14855 1.08277 1.21045 0.76199 0.86961 0.84582 1.90650 1.50488 1.17862 1.85233 1.20270 1.02995 0.97932 0.89828 1.19514 0.93759 1.04346 1.01319 1.20729 0.96731 0.96527 0.97014 1.20704 0.98302 1.06164 1.00953 1.20951 0.93912 0.99525 0.99152 1.21305 0.97383 1.00424 1.02071 1.17726 0.92397 0.89594 0.90778 1.19644 1.00981 1.34130 0.96251 0.90978 1.26679 1.04222 0.92857 0.94126 1.69894 1.36911 1.37210 1.01339 0.85313 0.76970 0.78687 0.79713 1.18322 1.18790 1.19380 1.20495 0.78986 0.83625 0.86184 1.43537 1.54841 1.33946 1.06613 1.90734 1.39664 1.28056 1.87307 0.93230 0.91617 0.87583 0.75004 0.88498 0.87386 0.86780 0.86739 0.87656 0.88448 0.90419 0.74836 0.75323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.31 9.38 71.98 0.68 -2.64 16 2 C 0.12 2.92 2.98 44.24 0.13 3.05 16 3 H 0.11 2.77 7.58 -2.39 -0.02 2.75 16 4 N -0.72 -21.76 4.95 -446.12 -2.21 -23.97 16 5 C 0.52 20.45 7.40 87.66 0.65 21.10 16 6 O -0.56 -26.55 15.70 -3.03 -0.05 -26.60 16 7 C -0.07 -2.81 5.18 29.10 0.15 -2.66 16 8 C -0.19 -9.18 4.43 -19.40 -0.09 -9.26 16 9 C -0.09 -4.22 9.66 22.22 0.21 -4.00 16 10 C -0.24 -11.17 10.05 22.46 0.23 -10.94 16 11 C -0.12 -5.82 10.02 22.22 0.22 -5.60 16 12 C -0.19 -10.70 8.69 22.73 0.20 -10.50 16 13 C 0.10 5.37 5.56 -21.29 -0.12 5.25 16 14 C -0.48 -25.98 8.14 23.46 0.19 -25.79 16 15 H 0.07 3.79 6.67 -2.91 -0.02 3.77 16 16 C 0.04 1.81 5.16 85.26 0.44 2.25 16 17 N -0.83 -44.08 10.96 21.83 0.24 -43.84 16 18 Si 0.97 39.03 29.59 68.60 2.03 41.06 16 19 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 20 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 21 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 22 C 0.52 11.06 7.49 87.66 0.66 11.72 16 23 N -0.82 -8.92 8.77 -173.53 -1.52 -10.44 16 24 O -0.58 -16.70 16.67 -3.05 -0.05 -16.75 16 25 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.11 1.35 7.56 -2.39 -0.02 1.33 16 28 H 0.41 11.46 7.79 -92.71 -0.72 10.73 16 29 H 0.10 3.84 7.08 -2.39 -0.02 3.83 16 30 H 0.11 3.55 8.05 -2.39 -0.02 3.53 16 31 H 0.11 4.47 8.06 -2.92 -0.02 4.44 16 32 H 0.11 4.52 8.06 -2.91 -0.02 4.49 16 33 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 34 H 0.10 5.66 6.20 -2.91 -0.02 5.64 16 35 H 0.29 13.77 8.30 -92.71 -0.77 13.00 16 36 H 0.42 2.03 8.25 -92.71 -0.76 1.27 16 37 H 0.41 3.36 8.93 -92.70 -0.83 2.53 16 Total: -1.00 -73.32 318.98 0.81 -72.51 By element: Atomic # 1 Polarization: 37.23 SS G_CDS: -1.18 Total: 36.05 kcal Atomic # 6 Polarization: -31.57 SS G_CDS: 3.55 Total: -28.02 kcal Atomic # 7 Polarization: -74.76 SS G_CDS: -3.49 Total: -78.25 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: -0.10 Total: -43.35 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Total: -73.32 0.81 -72.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776755050.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.180 kcal (2) G-P(sol) polarization free energy of solvation -73.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds